Wall clock time and date at job start Wed Apr 1 2020 03:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99710 * 2 1 4 4 H 1.48498 * 109.47366 * 269.99944 * 3 2 1 5 5 H 1.48497 * 109.47176 * 30.00351 * 3 2 1 6 6 H 1.48501 * 109.46922 * 149.99869 * 3 2 1 7 7 C 1.37873 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00106 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99760 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47269 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46812 * 54.99534 * 10 9 7 12 12 N 1.46506 * 109.46831 * 294.99979 * 10 9 7 13 13 C 1.34777 * 120.00033 * 155.00073 * 12 10 9 14 14 O 1.21585 * 119.99751 * 359.97438 * 13 12 10 15 15 N 1.34774 * 120.00134 * 179.97438 * 13 12 10 16 16 C 1.46500 * 120.00194 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.46806 * 34.99873 * 16 15 13 18 18 C 1.52994 * 109.46998 * 274.99887 * 16 15 13 19 19 O 1.42895 * 109.47463 * 295.00062 * 18 16 15 20 20 C 1.50698 * 109.47168 * 155.00110 * 16 15 13 21 21 N 1.30497 * 125.65157 * 65.02399 * 20 16 15 22 22 C 1.34127 * 109.25372 * 180.02562 * 21 20 16 23 23 C 1.34661 * 108.02422 * 359.97438 * 22 21 20 24 24 N 1.35048 * 125.64649 * 244.72078 * 20 16 15 25 25 H 0.96995 * 126.39683 * 359.97438 * 24 20 16 26 26 C 1.50703 * 109.47304 * 174.99842 * 10 9 7 27 27 C 1.38231 * 119.99850 * 79.72472 * 26 10 9 28 28 C 1.38234 * 119.99784 * 179.78676 * 27 26 10 29 29 C 1.38238 * 119.99871 * 0.44237 * 28 27 26 30 30 C 1.38233 * 120.00133 * 359.81196 * 29 28 27 31 31 C 1.38230 * 119.99625 * 259.99796 * 26 10 9 32 32 H 0.97005 * 120.00371 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47487 * 59.99906 * 9 7 2 34 34 H 1.09000 * 109.47054 * 299.99558 * 9 7 2 35 35 H 0.97000 * 119.99812 * 334.99233 * 12 10 9 36 36 H 0.97004 * 119.99547 * 359.97438 * 15 13 12 37 37 H 1.09007 * 109.47166 * 55.00088 * 18 16 15 38 38 H 1.08998 * 109.47450 * 174.99599 * 18 16 15 39 39 H 0.96701 * 114.00409 * 179.97438 * 19 18 16 40 40 H 1.08005 * 125.98688 * 180.02562 * 22 21 20 41 41 H 1.07998 * 126.59152 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00199 * 0.02562 * 27 26 10 43 43 H 1.08003 * 120.00226 * 180.27398 * 28 27 26 44 44 H 1.08001 * 119.99751 * 179.83432 * 29 28 27 45 45 H 1.08004 * 120.00235 * 179.97438 * 30 29 28 46 46 H 1.08004 * 120.00223 * 359.97438 * 31 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 1 3.5872 -3.1746 -0.8439 12 7 3.6335 -3.2929 1.2496 13 6 3.5067 -4.6339 1.2959 14 8 3.7139 -5.2988 0.2993 15 7 3.1502 -5.2377 2.4469 16 6 3.0118 -6.6953 2.4971 17 1 3.7566 -7.1536 1.8463 18 6 1.6108 -7.0911 2.0266 19 8 0.6396 -6.5873 2.9458 20 6 3.2198 -7.1712 3.9117 21 7 2.4502 -6.8937 4.9284 22 6 2.9403 -7.4845 6.0283 23 6 4.0556 -8.1539 5.6799 24 7 4.2302 -7.9603 4.3361 25 1 4.9470 -8.3206 3.7910 26 6 5.5235 -2.6382 -0.1247 27 6 6.3085 -2.3925 0.9864 28 6 7.6862 -2.3984 0.8742 29 6 8.2789 -2.6409 -0.3510 30 6 7.4939 -2.8813 -1.4631 31 6 6.1161 -2.8797 -1.3499 32 1 -0.4851 0.8401 -0.0004 33 1 3.8745 -0.6808 0.8904 34 1 3.8751 -0.6796 -0.8895 35 1 3.4680 -2.7623 2.0446 36 1 2.9853 -4.7072 3.2420 37 1 1.4274 -6.6708 1.0377 38 1 1.5369 -8.1775 1.9791 39 1 -0.2734 -6.8007 2.7096 40 1 2.5146 -7.4330 7.0196 41 1 4.6885 -8.7350 6.3342 42 1 5.8454 -2.1999 1.9428 43 1 8.2996 -2.2109 1.7431 44 1 9.3553 -2.6428 -0.4391 45 1 7.9569 -3.0703 -2.4203 46 1 5.5027 -3.0677 -2.2188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413767102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:28 Heat of formation + Delta-G solvation = 13.073458 kcal Electronic energy + Delta-G solvation = -30060.761067 eV Core-core repulsion = 25951.678241 eV Total energy + Delta-G solvation = -4109.082826 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18599 -39.87543 -38.75316 -36.91715 -35.33752 -34.20540 -32.64773 -32.57881 -31.50401 -30.58203 -29.96157 -29.19041 -27.80929 -24.99880 -23.43188 -22.32292 -21.74666 -21.72596 -21.01925 -20.02847 -19.82366 -18.76464 -17.55517 -17.09853 -17.05466 -16.41475 -16.03547 -15.28832 -15.17790 -14.81689 -14.50993 -14.41029 -14.27493 -14.09691 -13.81484 -13.67507 -13.49309 -13.19028 -13.08964 -12.94947 -12.58175 -12.41208 -12.31107 -11.74726 -11.53013 -11.32030 -11.07377 -10.72139 -10.61856 -10.14623 -10.11864 -10.01001 -9.89831 -9.81043 -9.66405 -9.29022 -8.95220 -8.62035 -8.61270 -8.57218 -8.36675 -8.26733 -6.06757 -4.06288 1.67933 1.71575 1.81543 2.76261 2.99863 3.28197 3.35981 3.37763 3.39197 3.67571 4.12805 4.21773 4.37552 4.41522 4.73365 4.79139 5.04313 5.17880 5.19668 5.23093 5.27017 5.28876 5.37432 5.44798 5.48247 5.59523 5.71052 5.82817 5.84895 5.96021 6.04641 6.25622 6.31875 6.45226 6.61505 6.66724 6.74866 6.76761 6.85007 6.95360 7.08070 7.14114 7.29993 7.31742 7.50301 7.69015 7.85483 8.03833 8.46939 8.51715 8.99923 9.06899 9.53942 11.06051 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008575 B = 0.003747 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.706916 B = 7471.625791 C = 9595.166935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.213 3.787 11 H 0.092 0.908 12 N -0.713 5.713 13 C 0.710 3.290 14 O -0.602 6.602 15 N -0.733 5.733 16 C 0.261 3.739 17 H 0.107 0.893 18 C 0.072 3.928 19 O -0.541 6.541 20 C 0.196 3.804 21 N -0.440 5.440 22 C -0.033 4.033 23 C -0.056 4.056 24 N -0.565 5.565 25 H 0.418 0.582 26 C -0.075 4.075 27 C -0.108 4.108 28 C -0.126 4.126 29 C -0.134 4.134 30 C -0.123 4.123 31 C -0.107 4.107 32 H 0.263 0.737 33 H 0.023 0.977 34 H 0.030 0.970 35 H 0.398 0.602 36 H 0.404 0.596 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.372 0.628 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.379 -15.119 7.784 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.095 0.905 9 C -0.052 4.052 10 C 0.108 3.892 11 H 0.110 0.890 12 N -0.365 5.365 13 C 0.410 3.590 14 O -0.481 6.481 15 N -0.390 5.390 16 C 0.153 3.847 17 H 0.125 0.875 18 C -0.009 4.009 19 O -0.345 6.345 20 C -0.068 4.068 21 N -0.159 5.159 22 C -0.182 4.182 23 C -0.190 4.190 24 N -0.168 5.168 25 H 0.255 0.745 26 C -0.076 4.076 27 C -0.126 4.126 28 C -0.144 4.144 29 C -0.153 4.153 30 C -0.141 4.141 31 C -0.125 4.125 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.048 0.952 35 H 0.232 0.768 36 H 0.239 0.761 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.218 0.782 40 H 0.186 0.814 41 H 0.193 0.807 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 12.197 -14.856 7.159 20.511 hybrid contribution 0.843 0.457 0.374 1.029 sum 13.041 -14.398 7.533 20.836 Atomic orbital electron populations 1.69909 1.06242 1.26870 1.50553 1.24978 0.94667 0.98906 0.94523 0.86870 0.80354 0.83984 0.78617 1.20260 1.21392 1.19012 1.21011 0.88622 0.94713 1.51306 0.90522 1.19882 0.97902 0.89833 0.97561 1.19830 0.87243 0.95934 0.86210 0.88977 1.45011 1.72704 1.04285 1.14491 1.15886 0.77557 0.82608 0.82986 1.90863 1.59070 1.64158 1.34055 1.44926 1.75282 1.05840 1.12908 1.18832 0.96970 0.81652 0.87260 0.87488 1.22452 0.88516 0.96730 0.93157 1.86712 1.17767 1.79821 1.50154 1.23084 0.88220 0.98326 0.97213 1.70432 1.26213 1.21740 0.97468 1.22503 0.95871 1.01207 0.98667 1.22775 1.03303 1.08463 0.84465 1.43353 1.23776 1.40367 1.09291 0.74461 1.20638 0.97165 0.96491 0.93347 1.20925 0.93311 0.99848 0.98539 1.21045 0.94847 1.01182 0.97354 1.21004 0.99188 1.01859 0.93216 1.21057 0.93869 1.00887 0.98303 1.21046 0.94595 0.99407 0.97480 0.92685 0.95895 0.95221 0.76761 0.76108 0.91922 0.93671 0.78249 0.81375 0.80718 0.86579 0.86801 0.86853 0.86553 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.52 -14.02 9.39 -34.44 -0.32 -14.34 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16 10 C 0.21 4.22 2.11 -69.08 -0.15 4.08 16 11 H 0.09 2.03 7.44 -51.93 -0.39 1.64 16 12 N -0.71 -13.01 4.05 -59.81 -0.24 -13.25 16 13 C 0.71 12.84 8.49 -86.92 -0.74 12.11 16 14 O -0.60 -12.45 15.67 5.29 0.08 -12.37 16 15 N -0.73 -11.07 5.02 -59.82 -0.30 -11.37 16 16 C 0.26 3.44 2.92 -69.09 -0.20 3.24 16 17 H 0.11 1.33 7.58 -51.93 -0.39 0.94 16 18 C 0.07 0.94 6.84 37.15 0.25 1.19 16 19 O -0.54 -7.58 12.16 -35.23 -0.43 -8.01 16 20 C 0.20 2.41 6.83 -155.41 -1.06 1.35 16 21 N -0.44 -6.14 10.00 -10.82 -0.11 -6.25 16 22 C -0.03 -0.37 11.87 -17.82 -0.21 -0.58 16 23 C -0.06 -0.48 12.04 -16.56 -0.20 -0.68 16 24 N -0.56 -5.14 6.15 -10.23 -0.06 -5.20 16 25 H 0.42 2.59 8.96 -40.82 -0.37 2.23 16 26 C -0.07 -1.33 4.91 -104.63 -0.51 -1.84 16 27 C -0.11 -1.73 9.32 -39.59 -0.37 -2.10 16 28 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 29 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 30 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 31 C -0.11 -1.76 9.67 -39.58 -0.38 -2.14 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.02 0.51 7.20 -51.93 -0.37 0.13 16 34 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 35 H 0.40 6.82 8.62 -40.82 -0.35 6.47 16 36 H 0.40 6.01 8.61 -40.82 -0.35 5.66 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.37 3.81 9.12 45.56 0.42 4.22 16 40 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 41 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.12 1.75 7.73 -52.49 -0.41 1.35 16 43 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 44 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 45 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 46 H 0.12 1.92 8.04 -52.48 -0.42 1.49 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -35.66 392.51 -9.90 -45.56 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -5.57 Total: 19.57 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -5.28 Total: -4.72 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.06 Total: -62.33 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.35 Total: -20.38 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.66 -9.90 -45.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413767102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.632 kcal (2) G-P(sol) polarization free energy of solvation -35.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds