Wall clock time and date at job start Wed Apr 1 2020 03:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99710 * 2 1 4 4 H 1.48498 * 109.47366 * 269.99944 * 3 2 1 5 5 H 1.48497 * 109.47176 * 30.00351 * 3 2 1 6 6 H 1.48501 * 109.46922 * 149.99869 * 3 2 1 7 7 C 1.37873 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00106 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99760 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.47269 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.46812 * 54.99534 * 10 9 7 12 12 N 1.46506 * 109.46831 * 294.99979 * 10 9 7 13 13 C 1.34777 * 120.00033 * 155.00073 * 12 10 9 14 14 O 1.21585 * 119.99751 * 359.97438 * 13 12 10 15 15 N 1.34774 * 120.00134 * 179.97438 * 13 12 10 16 16 C 1.46500 * 120.00194 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.46806 * 34.99873 * 16 15 13 18 18 C 1.52994 * 109.46998 * 274.99887 * 16 15 13 19 19 O 1.42895 * 109.47463 * 295.00062 * 18 16 15 20 20 C 1.50698 * 109.47168 * 155.00110 * 16 15 13 21 21 N 1.30497 * 125.65157 * 65.02399 * 20 16 15 22 22 C 1.34127 * 109.25372 * 180.02562 * 21 20 16 23 23 C 1.34661 * 108.02422 * 359.97438 * 22 21 20 24 24 N 1.35048 * 125.64649 * 244.72078 * 20 16 15 25 25 H 0.96995 * 126.39683 * 359.97438 * 24 20 16 26 26 C 1.50703 * 109.47304 * 174.99842 * 10 9 7 27 27 C 1.38231 * 119.99850 * 79.72472 * 26 10 9 28 28 C 1.38234 * 119.99784 * 179.78676 * 27 26 10 29 29 C 1.38238 * 119.99871 * 0.44237 * 28 27 26 30 30 C 1.38233 * 120.00133 * 359.81196 * 29 28 27 31 31 C 1.38230 * 119.99625 * 259.99796 * 26 10 9 32 32 H 0.97005 * 120.00371 * 0.02562 * 1 2 3 33 33 H 1.08994 * 109.47487 * 59.99906 * 9 7 2 34 34 H 1.09000 * 109.47054 * 299.99558 * 9 7 2 35 35 H 0.97000 * 119.99812 * 334.99233 * 12 10 9 36 36 H 0.97004 * 119.99547 * 359.97438 * 15 13 12 37 37 H 1.09007 * 109.47166 * 55.00088 * 18 16 15 38 38 H 1.08998 * 109.47450 * 174.99599 * 18 16 15 39 39 H 0.96701 * 114.00409 * 179.97438 * 19 18 16 40 40 H 1.08005 * 125.98688 * 180.02562 * 22 21 20 41 41 H 1.07998 * 126.59152 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00199 * 0.02562 * 27 26 10 43 43 H 1.08003 * 120.00226 * 180.27398 * 28 27 26 44 44 H 1.08001 * 119.99751 * 179.83432 * 29 28 27 45 45 H 1.08004 * 120.00235 * 179.97438 * 30 29 28 46 46 H 1.08004 * 120.00223 * 359.97438 * 31 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0014 11 1 3.5872 -3.1746 -0.8439 12 7 3.6335 -3.2929 1.2496 13 6 3.5067 -4.6339 1.2959 14 8 3.7139 -5.2988 0.2993 15 7 3.1502 -5.2377 2.4469 16 6 3.0118 -6.6953 2.4971 17 1 3.7566 -7.1536 1.8463 18 6 1.6108 -7.0911 2.0266 19 8 0.6396 -6.5873 2.9458 20 6 3.2198 -7.1712 3.9117 21 7 2.4502 -6.8937 4.9284 22 6 2.9403 -7.4845 6.0283 23 6 4.0556 -8.1539 5.6799 24 7 4.2302 -7.9603 4.3361 25 1 4.9470 -8.3206 3.7910 26 6 5.5235 -2.6382 -0.1247 27 6 6.3085 -2.3925 0.9864 28 6 7.6862 -2.3984 0.8742 29 6 8.2789 -2.6409 -0.3510 30 6 7.4939 -2.8813 -1.4631 31 6 6.1161 -2.8797 -1.3499 32 1 -0.4851 0.8401 -0.0004 33 1 3.8745 -0.6808 0.8904 34 1 3.8751 -0.6796 -0.8895 35 1 3.4680 -2.7623 2.0446 36 1 2.9853 -4.7072 3.2420 37 1 1.4274 -6.6708 1.0377 38 1 1.5369 -8.1775 1.9791 39 1 -0.2734 -6.8007 2.7096 40 1 2.5146 -7.4330 7.0196 41 1 4.6885 -8.7350 6.3342 42 1 5.8454 -2.1999 1.9428 43 1 8.2996 -2.2109 1.7431 44 1 9.3553 -2.6428 -0.4391 45 1 7.9569 -3.0703 -2.4203 46 1 5.5027 -3.0677 -2.2188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413767102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:27 Heat of formation + Delta-G solvation = -14.420733 kcal Electronic energy + Delta-G solvation = -30061.953304 eV Core-core repulsion = 25951.678241 eV Total energy + Delta-G solvation = -4110.275064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.00728 -41.27237 -39.96765 -38.06835 -36.82219 -35.50424 -34.67131 -33.41612 -32.88413 -31.71296 -31.07784 -30.84756 -28.79935 -26.66993 -24.52054 -23.58138 -23.25047 -22.52028 -22.28975 -21.26690 -21.05966 -19.90595 -19.04917 -18.64095 -18.23140 -17.70797 -17.24145 -16.60217 -16.40554 -16.23951 -15.94476 -15.55511 -15.52417 -15.04459 -15.01780 -14.89801 -14.64288 -14.55268 -14.27237 -14.19469 -14.13598 -13.77441 -13.53162 -13.40349 -13.02236 -12.60392 -12.52647 -12.39930 -11.92143 -11.72930 -11.71686 -11.40159 -11.35037 -10.95820 -10.93227 -10.78459 -10.75416 -10.33018 -9.80012 -9.72834 -9.52183 -9.39431 -8.25698 -6.30254 0.50833 0.57313 0.98231 1.38247 1.39179 1.50301 1.72762 2.16408 2.19764 2.37205 2.40153 2.95859 3.09011 3.28790 3.39305 3.43616 3.90566 3.96004 4.04935 4.21988 4.28771 4.33573 4.36498 4.37710 4.48163 4.53604 4.60549 4.62599 4.74922 4.76388 4.78399 5.03501 5.16107 5.17043 5.19964 5.28809 5.43143 5.56629 5.60949 5.65882 5.67719 5.84687 5.84958 6.06425 6.19311 6.29060 6.47399 6.76811 6.93074 7.09922 7.22195 7.33580 7.62179 8.90788 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008575 B = 0.003747 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3264.706916 B = 7471.625791 C = 9595.166935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.517 4.517 8 H 0.030 0.970 9 C -0.005 4.005 10 C 0.224 3.776 11 H 0.057 0.943 12 N -0.713 5.713 13 C 0.708 3.292 14 O -0.631 6.631 15 N -0.722 5.722 16 C 0.259 3.741 17 H 0.113 0.887 18 C 0.075 3.925 19 O -0.559 6.559 20 C 0.176 3.824 21 N -0.476 5.476 22 C -0.068 4.068 23 C -0.026 4.026 24 N -0.552 5.552 25 H 0.432 0.568 26 C -0.097 4.097 27 C -0.119 4.119 28 C -0.125 4.125 29 C -0.127 4.127 30 C -0.122 4.122 31 C -0.129 4.129 32 H 0.265 0.735 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.402 0.598 36 H 0.405 0.595 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.385 0.615 40 H 0.182 0.818 41 H 0.219 0.781 42 H 0.119 0.881 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.340 -15.346 9.159 24.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.555 4.555 8 H 0.049 0.951 9 C -0.042 4.042 10 C 0.119 3.881 11 H 0.076 0.924 12 N -0.365 5.365 13 C 0.408 3.592 14 O -0.513 6.513 15 N -0.377 5.377 16 C 0.152 3.848 17 H 0.131 0.869 18 C -0.005 4.005 19 O -0.365 6.365 20 C -0.088 4.088 21 N -0.196 5.196 22 C -0.216 4.216 23 C -0.161 4.161 24 N -0.157 5.157 25 H 0.273 0.727 26 C -0.099 4.099 27 C -0.138 4.138 28 C -0.142 4.142 29 C -0.145 4.145 30 C -0.140 4.140 31 C -0.147 4.147 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.237 0.763 36 H 0.240 0.760 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.233 0.767 40 H 0.199 0.801 41 H 0.235 0.765 42 H 0.137 0.863 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.173 -15.114 8.543 23.727 hybrid contribution -0.399 0.379 -0.013 0.550 sum 15.773 -14.735 8.530 23.210 Atomic orbital electron populations 1.70073 1.08309 1.27989 1.52496 1.25898 0.95441 1.03090 0.94189 0.85742 0.79669 0.78663 0.79058 1.19598 1.21235 1.16611 1.21190 0.91069 0.92929 1.50348 0.95136 1.19738 0.94572 0.92037 0.97897 1.19422 0.89314 0.93730 0.85667 0.92443 1.44924 1.72891 1.04562 1.14143 1.15968 0.77467 0.82372 0.83370 1.90829 1.60461 1.64693 1.35281 1.44886 1.74146 1.06930 1.11775 1.18923 0.97117 0.80201 0.88604 0.86883 1.22421 0.88490 0.98006 0.91626 1.86675 1.18941 1.80298 1.50559 1.22630 0.89638 1.00148 0.96337 1.70327 1.27612 1.22933 0.98752 1.22917 0.97397 1.02506 0.98791 1.23404 1.02195 1.06349 0.84146 1.43323 1.23269 1.39304 1.09785 0.72723 1.20403 0.95358 0.99304 0.94819 1.21052 0.94460 1.00272 0.97993 1.21410 0.94055 0.99898 0.98882 1.21462 1.00999 0.99673 0.92375 1.21383 0.92737 0.99803 1.00101 1.21182 0.96097 1.00512 0.96933 0.92609 0.94704 0.95015 0.76271 0.75990 0.94479 0.91101 0.76723 0.80065 0.76462 0.86285 0.83821 0.83249 0.83863 0.86717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 2 C 0.01 0.63 5.47 84.65 0.46 1.09 16 3 Si 0.94 43.60 27.47 68.60 1.88 45.48 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 7 C -0.52 -29.22 9.39 25.60 0.24 -28.98 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 9 C 0.00 -0.21 3.56 29.85 0.11 -0.11 16 10 C 0.22 9.29 2.11 44.25 0.09 9.38 16 11 H 0.06 2.73 7.44 -2.39 -0.02 2.72 16 12 N -0.71 -27.27 4.05 -461.39 -1.87 -29.14 16 13 C 0.71 26.91 8.49 179.05 1.52 28.43 16 14 O -0.63 -27.44 15.67 -3.98 -0.06 -27.51 16 15 N -0.72 -22.66 5.02 -461.42 -2.32 -24.98 16 16 C 0.26 6.94 2.92 44.24 0.13 7.07 16 17 H 0.11 2.84 7.58 -2.39 -0.02 2.82 16 18 C 0.07 2.03 6.84 71.98 0.49 2.52 16 19 O -0.56 -16.31 12.16 -148.98 -1.81 -18.12 16 20 C 0.18 4.23 6.83 138.13 0.94 5.18 16 21 N -0.48 -13.15 10.00 -188.13 -1.88 -15.03 16 22 C -0.07 -1.40 11.87 83.52 0.99 -0.41 16 23 C -0.03 -0.36 12.04 83.08 1.00 0.64 16 24 N -0.55 -8.86 6.15 -186.28 -1.15 -10.00 16 25 H 0.43 4.27 8.96 -92.71 -0.83 3.44 16 26 C -0.10 -3.45 4.91 -19.87 -0.10 -3.55 16 27 C -0.12 -3.64 9.32 22.27 0.21 -3.44 16 28 C -0.12 -3.06 10.05 22.27 0.22 -2.84 16 29 C -0.13 -2.89 10.05 22.27 0.22 -2.66 16 30 C -0.12 -3.14 10.05 22.27 0.22 -2.92 16 31 C -0.13 -4.19 9.67 22.27 0.22 -3.98 16 32 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 33 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 34 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 35 H 0.40 14.37 8.62 -92.71 -0.80 13.57 16 36 H 0.41 12.54 8.61 -92.70 -0.80 11.74 16 37 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.38 8.34 9.12 -74.06 -0.68 7.66 16 40 H 0.18 2.98 8.06 -2.91 -0.02 2.95 16 41 H 0.22 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.12 3.45 7.73 -2.91 -0.02 3.43 16 43 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 44 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 45 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.11 3.75 8.04 -2.91 -0.02 3.73 16 Total: -1.00 -81.14 392.51 -2.03 -83.18 By element: Atomic # 1 Polarization: 51.81 SS G_CDS: -2.11 Total: 49.70 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.98 Total: 5.44 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -6.91 Total: -138.17 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.87 Total: -45.63 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -81.14 -2.03 -83.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413767102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.755 kcal (2) G-P(sol) polarization free energy of solvation -81.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds