Wall clock time and date at job start Wed Apr 1 2020 03:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46792 * 241.60836 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.46906 * 55.00224 * 6 5 4 8 8 N 1.46497 * 109.47408 * 295.00294 * 6 5 4 9 9 C 1.34775 * 120.00290 * 154.99725 * 8 6 5 10 10 O 1.21582 * 120.00326 * 359.97438 * 9 8 6 11 11 N 1.34780 * 120.00124 * 180.02562 * 9 8 6 12 12 C 1.46495 * 120.00360 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47324 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99801 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99683 * 179.97438 * 13 12 11 16 16 C 1.37106 * 119.99588 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99791 * 0.02562 * 16 15 13 18 18 C 1.38951 * 119.99845 * 179.97438 * 16 15 13 19 19 N 1.31407 * 119.99894 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99917 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47102 * 60.00130 * 20 18 16 22 22 H 1.48501 * 109.47387 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47345 * 300.00318 * 20 18 16 24 24 C 1.50699 * 109.47482 * 174.99860 * 6 5 4 25 25 C 1.38236 * 119.99912 * 79.72929 * 24 6 5 26 26 C 1.38240 * 120.00151 * 179.81152 * 25 24 6 27 27 C 1.38231 * 119.99531 * 0.39579 * 26 25 24 28 28 C 1.38233 * 120.00345 * 359.85881 * 27 26 25 29 29 C 1.38232 * 120.00107 * 359.95306 * 28 27 26 30 30 H 1.09001 * 109.46765 * 121.61169 * 3 2 1 31 31 H 1.08992 * 109.47494 * 1.61201 * 3 2 1 32 32 H 1.09002 * 109.47398 * 300.00415 * 4 3 2 33 33 H 1.09001 * 109.47194 * 60.00595 * 4 3 2 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 3 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 3 36 36 H 0.97003 * 119.99849 * 334.99597 * 8 6 5 37 37 H 0.97003 * 120.00015 * 359.97438 * 11 9 8 38 38 H 1.09001 * 109.46730 * 300.00186 * 12 11 9 39 39 H 1.09006 * 109.46992 * 59.99802 * 12 11 9 40 40 H 0.97000 * 120.00475 * 0.02562 * 15 13 12 41 41 H 0.97000 * 119.99743 * 179.97438 * 19 18 16 42 42 H 1.08006 * 119.99710 * 359.97438 * 25 24 6 43 43 H 1.07995 * 120.00176 * 180.22759 * 26 25 24 44 44 H 1.08006 * 119.99475 * 179.83643 * 27 26 25 45 45 H 1.08003 * 120.00170 * 179.97438 * 28 27 26 46 46 H 1.07994 * 120.00242 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.6868 1.2690 5 6 4.6476 0.6881 1.2688 6 6 5.1573 1.3736 2.5380 7 1 4.7232 0.8884 3.4123 8 7 4.7685 2.7860 2.5200 9 6 4.6414 3.4648 3.6774 10 8 4.8488 2.9049 4.7365 11 7 4.2832 4.7640 3.6608 12 6 4.1455 5.5020 4.9187 13 6 3.7400 6.9235 4.6254 14 8 3.5812 7.2845 3.4784 15 7 3.5529 7.7934 5.6377 16 6 3.1846 9.0868 5.3708 17 1 3.0440 9.4083 4.3495 18 6 2.9911 9.9835 6.4145 19 7 3.1617 9.5920 7.6572 20 14 2.4885 11.7454 6.0509 21 1 1.1914 11.7510 5.3280 22 1 2.3483 12.4934 7.3261 23 1 3.5269 12.3928 5.2095 24 6 6.6593 1.2667 2.5982 25 6 7.4438 2.1274 1.8534 26 6 8.8217 2.0320 1.9116 27 6 9.4148 1.0705 2.7082 28 6 8.6302 0.2064 3.4489 29 6 7.2524 0.3043 3.3937 30 1 2.9710 0.5395 -0.8752 31 1 2.9718 -1.0263 -0.0289 32 1 2.7537 1.7139 1.2979 33 1 2.7546 0.1480 2.1442 34 1 5.0118 -0.3389 1.2397 35 1 5.0104 1.2271 0.3936 36 1 4.6027 3.2326 1.6750 37 1 4.1173 5.2106 2.8158 38 1 3.3841 5.0268 5.5372 39 1 5.0982 5.4982 5.4484 40 1 3.6796 7.5046 6.5550 41 1 3.0270 10.2181 8.3857 42 1 6.9802 2.8762 1.2281 43 1 9.4346 2.7068 1.3326 44 1 10.4913 0.9942 2.7516 45 1 9.0936 -0.5451 4.0710 46 1 6.6395 -0.3704 3.9727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001478602795.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:06 Heat of formation + Delta-G solvation = -28.619144 kcal Electronic energy + Delta-G solvation = -28532.700840 eV Core-core repulsion = 24421.810087 eV Total energy + Delta-G solvation = -4110.890753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.39161 -39.14987 -38.18002 -37.48651 -36.23957 -34.40394 -33.78039 -33.63143 -31.60124 -31.31860 -30.96412 -29.18623 -27.40469 -25.05053 -24.29411 -22.80268 -22.04225 -21.26788 -20.45842 -19.57811 -18.51505 -18.04298 -17.76350 -17.18714 -16.45352 -15.82592 -15.72841 -15.57094 -15.14721 -15.01489 -14.58745 -14.43935 -14.31036 -14.05831 -13.98799 -13.80856 -13.51109 -13.40194 -13.35511 -13.12301 -12.91564 -12.31722 -12.17154 -12.02103 -12.01206 -11.90528 -11.62984 -11.57294 -11.19681 -11.17764 -11.09656 -11.07468 -10.50700 -10.31405 -10.03329 -9.62180 -9.26252 -9.02829 -8.87464 -8.62373 -8.61693 -8.09592 -6.50918 -3.93019 1.19237 1.28758 2.45034 2.49236 2.78512 3.13896 3.21722 3.25595 3.39352 3.56735 3.68190 3.75861 4.09137 4.32062 4.41796 4.50419 4.51631 4.74035 4.85300 4.88491 4.90937 4.96493 4.99310 5.02978 5.14387 5.17791 5.28628 5.38421 5.42802 5.51392 5.69328 5.82306 5.83825 5.89098 5.94005 6.01373 6.08819 6.32081 6.33610 6.38566 6.57808 6.75548 6.86564 7.06762 7.26479 7.46170 7.92689 8.22725 8.45677 8.79988 9.05011 9.40073 9.87920 10.65951 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.002392 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.624543 B =11701.962524 C =14102.132764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.203 3.797 3 C -0.025 4.025 4 C -0.119 4.119 5 C -0.120 4.120 6 C 0.206 3.794 7 H 0.099 0.901 8 N -0.742 5.742 9 C 0.706 3.294 10 O -0.593 6.593 11 N -0.724 5.724 12 C 0.129 3.871 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.105 0.895 18 C 0.026 3.974 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 C -0.092 4.092 25 C -0.102 4.102 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.104 4.104 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.396 0.604 37 H 0.406 0.594 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.396 0.604 41 H 0.275 0.725 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.726 -21.433 -12.901 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.115 4.115 3 C -0.065 4.065 4 C -0.158 4.158 5 C -0.158 4.158 6 C 0.100 3.900 7 H 0.117 0.883 8 N -0.398 5.398 9 C 0.406 3.594 10 O -0.471 6.471 11 N -0.381 5.381 12 C 0.001 3.999 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.435 4.435 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 C -0.093 4.093 25 C -0.121 4.121 26 C -0.140 4.140 27 C -0.141 4.141 28 C -0.140 4.140 29 C -0.122 4.122 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.230 0.770 37 H 0.243 0.757 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.085 0.915 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.047 -21.554 -12.461 26.165 hybrid contribution 0.242 1.277 -0.182 1.312 sum 8.288 -20.277 -12.643 25.292 Atomic orbital electron populations 1.81268 1.13241 1.08593 1.08329 1.29269 0.95421 0.93367 0.93429 1.19336 0.81505 1.04419 1.01255 1.21593 0.95534 1.02178 0.96529 1.21873 0.94561 1.02066 0.97337 1.19634 0.89831 0.81112 0.99448 0.88300 1.45107 1.75645 1.11418 1.07656 1.15840 0.78080 0.81366 0.84131 1.90910 1.57971 1.68782 1.29435 1.44765 1.73505 1.09195 1.10668 1.20770 1.02366 0.91190 0.85609 1.19766 0.85676 0.86809 0.86317 1.90486 1.58347 1.78828 1.20865 1.41784 1.58634 1.10000 1.07960 1.19673 1.43498 0.85168 0.95153 0.87756 1.25320 0.97096 1.00657 0.94621 1.69606 1.48368 1.36865 0.98651 0.85878 0.79334 0.81207 0.77575 1.19784 1.20850 1.19784 1.20230 0.95704 0.96274 0.97136 1.20917 0.93542 0.98500 0.99102 1.21134 0.94914 0.98520 0.99463 1.21140 0.99720 0.95956 0.97272 1.21112 0.93845 0.99538 0.99474 1.20989 0.94819 0.98338 0.98065 0.87273 0.87310 0.90433 0.90564 0.89481 0.90453 0.76986 0.75678 0.90071 0.90102 0.77019 0.91533 0.86335 0.86270 0.86386 0.86216 0.86030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.25 18.54 42.15 0.78 -4.46 16 2 C 0.20 1.61 15.43 -20.76 -0.32 1.29 16 3 C -0.03 -0.07 5.70 -29.52 -0.17 -0.24 16 4 C -0.12 -0.53 5.06 -26.73 -0.14 -0.66 16 5 C -0.12 -0.49 4.73 -26.74 -0.13 -0.61 16 6 C 0.21 1.68 2.17 -69.09 -0.15 1.53 16 7 H 0.10 0.98 7.44 -51.93 -0.39 0.59 16 8 N -0.74 -7.34 3.78 -59.82 -0.23 -7.57 16 9 C 0.71 10.57 8.52 -86.92 -0.74 9.82 16 10 O -0.59 -10.98 16.01 5.29 0.08 -10.90 16 11 N -0.72 -11.62 5.53 -66.41 -0.37 -11.99 16 12 C 0.13 2.38 6.15 -5.19 -0.03 2.34 16 13 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16 14 O -0.60 -15.11 15.24 5.55 0.08 -15.02 16 15 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 16 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 17 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 20 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 C -0.09 -0.86 4.91 -104.62 -0.51 -1.38 16 25 C -0.10 -0.95 9.32 -39.58 -0.37 -1.32 16 26 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 27 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 28 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 29 C -0.10 -0.97 9.67 -39.58 -0.38 -1.35 16 30 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.11 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.08 0.45 7.75 -51.93 -0.40 0.05 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.40 2.94 8.62 -40.82 -0.35 2.59 16 37 H 0.41 6.29 7.45 -40.82 -0.30 5.98 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.40 9.47 7.90 -40.82 -0.32 9.14 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.12 0.96 7.73 -52.48 -0.41 0.56 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 45 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 LS Contribution 404.71 15.07 6.10 6.10 Total: -1.00 -35.60 404.71 -8.69 -44.29 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -6.33 Total: 14.13 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -4.46 Total: 6.76 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: 0.85 Total: -60.89 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: 0.17 Total: -25.92 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.60 -8.69 -44.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001478602795.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.672 kcal (2) G-P(sol) polarization free energy of solvation -35.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds