Wall clock time and date at job start Wed Apr 1 2020 02:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99768 * 2 1 4 4 H 1.48497 * 109.47287 * 239.99652 * 3 2 1 5 5 H 1.48506 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47202 * 119.99366 * 3 2 1 7 7 C 1.38809 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99809 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00085 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00036 * 174.60320 * 9 7 2 11 11 C 1.52996 * 110.01320 * 301.46259 * 10 9 7 12 12 N 1.46498 * 109.47429 * 303.89762 * 11 10 9 13 13 C 1.34775 * 120.00092 * 175.12946 * 12 11 10 14 14 O 1.21591 * 119.99992 * 0.02562 * 13 12 11 15 15 C 1.47523 * 120.00055 * 180.02562 * 13 12 11 16 16 C 1.39544 * 120.24299 * 0.02562 * 15 13 12 17 17 C 1.38200 * 120.26551 * 179.97438 * 16 15 13 18 18 C 1.37967 * 120.70612 * 0.02562 * 17 16 15 19 19 C 1.39608 * 120.11684 * 359.97438 * 18 17 16 20 20 N 1.35983 * 133.39526 * 180.31320 * 19 18 17 21 21 C 1.30732 * 109.51540 * 180.02562 * 20 19 18 22 22 O 1.35271 * 125.05545 * 179.89065 * 21 20 19 23 23 N 1.36478 * 109.88545 * 359.63248 * 21 20 19 24 24 H 0.97004 * 126.32137 * 180.20326 * 23 21 20 25 25 C 1.37844 * 107.35339 * 0.22574 * 23 21 20 26 26 C 1.54265 * 110.07133 * 62.87795 * 10 9 7 27 27 C 1.54888 * 104.19422 * 95.69582 * 26 10 9 28 28 C 1.54887 * 102.74959 * 37.94123 * 27 26 10 29 29 C 1.53869 * 110.02803 * 180.02562 * 10 9 7 30 30 H 0.96996 * 120.00351 * 0.02562 * 1 2 3 31 31 H 0.96996 * 119.99740 * 354.60133 * 9 7 2 32 32 H 1.09008 * 109.46566 * 183.90017 * 11 10 9 33 33 H 1.08996 * 109.47462 * 63.90774 * 11 10 9 34 34 H 0.97003 * 119.99784 * 355.13496 * 12 11 10 35 35 H 1.08001 * 119.86260 * 359.97438 * 16 15 13 36 36 H 1.07999 * 119.64942 * 180.02562 * 17 16 15 37 37 H 1.08003 * 119.94734 * 180.02562 * 18 17 16 38 38 H 0.96705 * 114.00605 * 269.69562 * 22 21 20 39 39 H 1.08997 * 110.48572 * 214.37517 * 26 10 9 40 40 H 1.09002 * 110.48782 * 337.01960 * 26 10 9 41 41 H 1.09004 * 110.75862 * 279.62561 * 27 26 10 42 42 H 1.09008 * 110.75656 * 156.25633 * 27 26 10 43 43 H 1.08998 * 110.49091 * 203.37691 * 28 27 26 44 44 H 1.08997 * 110.48413 * 80.73351 * 28 27 26 45 45 H 1.08989 * 110.03928 * 359.95226 * 29 10 9 46 46 H 1.09005 * 110.02889 * 121.38536 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1037 1.6966 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0534 -3.6540 -0.1182 11 6 2.8624 -3.6730 -1.4166 12 7 1.9683 -3.4363 -2.5527 13 6 2.4758 -3.3116 -3.7951 14 8 3.6756 -3.3962 -3.9730 15 6 1.5755 -3.0726 -4.9390 16 6 0.1977 -2.9742 -4.7405 17 6 -0.6461 -2.7498 -5.8118 18 6 -0.1429 -2.6204 -7.0899 19 6 1.2318 -2.7150 -7.3144 20 7 2.0044 -2.6269 -8.4300 21 6 3.2603 -2.7895 -8.1053 22 8 4.2970 -2.7633 -8.9739 23 7 3.3703 -2.9838 -6.7589 24 1 4.1926 -3.1259 -6.2642 25 6 2.0973 -2.9412 -6.2320 26 6 2.9917 -3.8408 1.0919 27 6 2.1745 -4.7156 2.0747 28 6 1.4386 -5.6964 1.1284 29 6 1.0659 -4.8338 -0.0939 30 1 -0.4850 0.8400 -0.0004 31 1 0.3589 -2.3899 0.0792 32 1 3.3446 -4.6441 -1.5300 33 1 3.6220 -2.8920 -1.3830 34 1 1.0111 -3.3691 -2.4108 35 1 -0.2107 -3.0738 -3.7457 36 1 -1.7107 -2.6749 -5.6468 37 1 -0.8134 -2.4448 -7.9181 38 1 4.5205 -3.6275 -9.3458 39 1 3.9042 -4.3555 0.7912 40 1 3.2274 -2.8774 1.5442 41 1 1.4614 -4.1078 2.6316 42 1 2.8356 -5.2557 2.7526 43 1 0.5408 -6.0873 1.6073 44 1 2.1002 -6.5108 0.8336 45 1 0.0454 -4.4646 0.0071 46 1 1.1626 -5.4204 -1.0076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482221384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:44 Heat of formation + Delta-G solvation = -20.446941 kcal Electronic energy + Delta-G solvation = -30414.323647 eV Core-core repulsion = 26303.787267 eV Total energy + Delta-G solvation = -4110.536380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.31825 -40.95862 -39.66384 -38.93072 -37.44030 -35.58838 -35.14058 -34.27087 -32.50119 -31.39947 -30.03954 -29.55024 -29.23014 -26.38930 -25.22182 -24.37118 -23.43295 -23.11254 -21.84140 -21.13807 -20.24675 -19.85212 -19.02107 -18.79464 -18.65448 -17.63376 -17.26401 -16.92384 -16.63668 -16.28148 -15.99080 -15.81893 -15.51774 -15.27314 -15.16751 -15.02601 -14.94429 -14.23212 -14.06324 -13.57724 -13.51290 -13.21255 -13.10507 -12.93627 -12.69163 -12.66106 -12.46609 -12.39245 -12.16136 -11.87639 -11.86515 -11.71847 -11.57928 -11.47821 -11.37937 -11.29985 -11.00763 -10.81557 -10.04250 -9.48700 -9.25778 -8.93676 -7.90715 -5.15099 -0.53870 0.35319 1.17909 1.42303 1.44461 1.45197 1.48447 1.96299 2.24980 2.55959 2.68787 2.81368 3.39709 3.44850 3.75954 3.78505 3.85544 3.91147 3.97497 4.09314 4.15137 4.16863 4.33343 4.45534 4.58871 4.68352 4.68887 4.75024 4.85848 4.89152 4.97691 5.06028 5.13247 5.15042 5.20571 5.29010 5.30080 5.35879 5.41284 5.46071 5.56926 5.62726 5.66389 5.71990 5.83012 6.33549 6.55154 6.56682 6.61389 7.17934 7.41654 8.14724 8.39703 9.31204 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010207 B = 0.003544 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2742.427873 B = 7898.856642 C = 8920.208320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.057 4.057 3 Si 0.942 3.058 4 H -0.296 1.296 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.215 4.215 8 H 0.059 0.941 9 N -0.712 5.712 10 C 0.185 3.815 11 C 0.126 3.874 12 N -0.685 5.685 13 C 0.551 3.449 14 O -0.595 6.595 15 C -0.147 4.147 16 C -0.051 4.051 17 C -0.121 4.121 18 C -0.035 4.035 19 C 0.025 3.975 20 N -0.507 5.507 21 C 0.453 3.547 22 O -0.441 6.441 23 N -0.587 5.587 24 H 0.433 0.567 25 C 0.088 3.912 26 C -0.133 4.133 27 C -0.113 4.113 28 C -0.112 4.112 29 C -0.121 4.121 30 H 0.248 0.752 31 H 0.378 0.622 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.408 0.592 35 H 0.149 0.851 36 H 0.177 0.823 37 H 0.162 0.838 38 H 0.434 0.566 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -14.412 -10.059 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.250 4.250 3 Si 0.774 3.226 4 H -0.224 1.224 5 H -0.221 1.221 6 H -0.209 1.209 7 C -0.347 4.347 8 H 0.077 0.923 9 N -0.353 5.353 10 C 0.094 3.906 11 C 0.000 4.000 12 N -0.333 5.333 13 C 0.340 3.660 14 O -0.479 6.479 15 C -0.153 4.153 16 C -0.071 4.071 17 C -0.141 4.141 18 C -0.054 4.054 19 C -0.093 4.093 20 N -0.239 5.239 21 C 0.149 3.851 22 O -0.246 6.246 23 N -0.211 5.211 24 H 0.275 0.725 25 C -0.025 4.025 26 C -0.173 4.173 27 C -0.151 4.151 28 C -0.149 4.149 29 C -0.159 4.159 30 H 0.058 0.942 31 H 0.212 0.788 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.246 0.754 35 H 0.167 0.833 36 H 0.194 0.806 37 H 0.180 0.820 38 H 0.297 0.703 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.634 -13.612 -10.965 17.491 hybrid contribution 1.089 1.023 1.047 1.824 sum 1.723 -12.589 -9.918 16.119 Atomic orbital electron populations 1.69706 1.05568 1.25497 1.59751 1.25103 0.96015 0.99394 1.04514 0.85695 0.77610 0.81915 0.77376 1.22381 1.22110 1.20929 1.19136 0.90663 0.85142 1.39805 0.92258 1.42594 1.05666 0.99994 1.87051 1.20718 0.92079 0.86612 0.91190 1.21828 0.92653 0.99213 0.86304 1.45573 1.11766 1.70350 1.05614 1.18441 0.87482 0.76279 0.83789 1.90612 1.16756 1.54557 1.85980 1.18940 0.94785 1.12101 0.89450 1.21531 0.90165 0.94202 1.01170 1.21267 1.01949 1.00642 0.90280 1.20850 0.90511 0.95240 0.98808 1.19204 0.95323 1.07343 0.87399 1.70688 0.99565 1.25489 1.28188 1.20479 0.87299 0.97886 0.79475 1.84800 1.45011 1.38403 1.56422 1.43527 1.09096 1.60138 1.08299 0.72529 1.18566 0.85000 1.04223 0.94725 1.22787 0.98261 0.99508 0.96743 1.22355 0.98523 0.96952 0.97237 1.22276 1.00558 0.97272 0.94843 1.22377 0.98571 0.95255 0.99663 0.94247 0.78850 0.91216 0.94876 0.75443 0.83301 0.80574 0.81998 0.70272 0.91302 0.93531 0.93183 0.90524 0.90630 0.90267 0.91548 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.01 13.06 21.65 0.28 -53.73 16 2 C -0.06 -3.10 5.50 84.86 0.47 -2.63 16 3 Si 0.94 46.05 29.55 68.60 2.03 48.08 16 4 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 5 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.22 -11.00 8.39 84.03 0.70 -10.30 16 8 H 0.06 3.11 7.23 -2.91 -0.02 3.09 16 9 N -0.71 -30.79 4.76 -300.07 -1.43 -32.22 16 10 C 0.18 6.21 0.68 4.32 0.00 6.22 16 11 C 0.13 4.42 3.99 86.38 0.34 4.76 16 12 N -0.68 -23.14 5.05 -466.29 -2.36 -25.50 16 13 C 0.55 19.80 7.76 86.69 0.67 20.47 16 14 O -0.60 -24.04 15.27 -4.00 -0.06 -24.11 16 15 C -0.15 -4.59 5.88 -20.07 -0.12 -4.71 16 16 C -0.05 -1.27 9.53 22.58 0.22 -1.06 16 17 C -0.12 -2.42 9.99 22.20 0.22 -2.20 16 18 C -0.03 -0.77 10.09 22.54 0.23 -0.54 16 19 C 0.02 0.72 7.22 39.36 0.28 1.00 16 20 N -0.51 -14.83 11.32 -306.48 -3.47 -18.30 16 21 C 0.45 11.86 9.40 179.73 1.69 13.55 16 22 O -0.44 -8.20 13.63 -85.55 -1.17 -9.36 16 23 N -0.59 -16.82 6.03 -301.80 -1.82 -18.64 16 24 H 0.43 12.15 7.71 -92.71 -0.71 11.44 16 25 C 0.09 2.74 6.88 39.17 0.27 3.01 16 26 C -0.13 -4.27 5.94 31.67 0.19 -4.09 16 27 C -0.11 -2.99 6.91 31.88 0.22 -2.77 16 28 C -0.11 -2.48 6.83 31.64 0.22 -2.26 16 29 C -0.12 -3.16 5.80 31.29 0.18 -2.98 16 30 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.38 17.40 7.28 -92.71 -0.67 16.73 16 32 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.03 1.39 7.49 -2.39 -0.02 1.37 16 34 H 0.41 12.82 6.02 -92.71 -0.56 12.26 16 35 H 0.15 3.37 6.39 -2.91 -0.02 3.35 16 36 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 38 H 0.43 2.71 9.06 -74.05 -0.67 2.04 16 39 H 0.07 1.97 7.85 -2.39 -0.02 1.95 16 40 H 0.05 1.79 7.12 -2.39 -0.02 1.78 16 41 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 1.82 7.44 -2.39 -0.02 1.80 16 46 H 0.08 1.80 7.55 -2.38 -0.02 1.78 16 Total: -1.00 -71.28 377.04 -3.74 -75.03 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: -1.54 Total: 43.27 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 5.79 Total: 15.48 kcal Atomic # 7 Polarization: -139.60 SS G_CDS: -8.79 Total: -148.38 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.23 Total: -33.47 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -71.28 -3.74 -75.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482221384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.580 kcal (2) G-P(sol) polarization free energy of solvation -71.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds