Wall clock time and date at job start Wed Apr 1 2020 02:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00351 * 2 1 4 4 H 1.48503 * 109.47129 * 239.72660 * 3 2 1 5 5 H 1.48500 * 109.46830 * 359.72581 * 3 2 1 6 6 H 1.48497 * 109.46958 * 119.72420 * 3 2 1 7 7 C 1.38812 * 119.99583 * 179.72475 * 2 1 3 8 8 H 1.08001 * 119.99737 * 169.26870 * 7 2 1 9 9 N 1.36937 * 120.00211 * 349.26670 * 7 2 1 10 10 C 1.47151 * 120.98368 * 328.91835 * 9 7 2 11 11 C 1.53290 * 108.38665 * 230.51059 * 10 9 7 12 12 O 1.42970 * 109.22284 * 307.69629 * 11 10 9 13 13 C 1.42964 * 114.16217 * 62.57719 * 12 11 10 14 14 C 1.47153 * 120.98106 * 148.63258 * 9 7 2 15 15 H 1.09005 * 109.68252 * 249.21294 * 14 9 7 16 16 C 1.53001 * 109.68459 * 9.76740 * 14 9 7 17 17 N 1.46500 * 109.46964 * 299.30998 * 16 14 9 18 18 C 1.34776 * 119.99693 * 179.97438 * 17 16 14 19 19 O 1.21274 * 120.00237 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99611 * 179.97438 * 18 17 16 21 21 C 1.50703 * 109.47013 * 179.97438 * 20 18 17 22 22 C 1.39673 * 119.09540 * 269.73237 * 21 20 18 23 23 C 1.35663 * 121.72705 * 179.72619 * 22 21 20 24 24 C 1.41118 * 119.53547 * 0.55727 * 23 22 21 25 25 C 1.38248 * 134.81910 * 179.73177 * 24 23 22 26 26 N 1.33990 * 107.90820 * 179.97438 * 25 24 23 27 27 H 0.96998 * 125.02170 * 180.02562 * 26 25 24 28 28 N 1.39966 * 109.95638 * 0.02562 * 26 25 24 29 29 C 1.32058 * 108.95830 * 359.97438 * 28 26 25 30 30 C 1.35646 * 119.08917 * 90.00291 * 21 20 18 31 31 H 0.96999 * 119.99885 * 0.27501 * 1 2 3 32 32 H 1.09001 * 109.68310 * 350.23497 * 10 9 7 33 33 H 1.09001 * 109.68469 * 110.74661 * 10 9 7 34 34 H 1.08996 * 109.51193 * 67.61881 * 11 10 9 35 35 H 1.09001 * 109.51460 * 187.72405 * 11 10 9 36 36 H 1.09007 * 109.51132 * 57.34868 * 13 12 11 37 37 H 1.09008 * 109.50893 * 177.44298 * 13 12 11 38 38 H 1.09005 * 109.46532 * 59.30675 * 16 14 9 39 39 H 1.08997 * 109.47344 * 179.30956 * 16 14 9 40 40 H 0.96995 * 120.00040 * 0.02562 * 17 16 14 41 41 H 1.08993 * 109.47470 * 300.00242 * 20 18 17 42 42 H 1.09007 * 109.47028 * 60.00364 * 20 18 17 43 43 H 1.08001 * 119.13579 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.23051 * 180.26901 * 23 22 21 45 45 H 1.07998 * 126.04839 * 0.02562 * 25 24 23 46 46 H 1.07997 * 120.20086 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2853 2.7464 -0.0067 6 1 3.0989 1.6992 1.2158 7 6 2.0101 -1.2022 0.0058 8 1 3.0760 -1.2112 -0.1683 9 7 1.3434 -2.3766 0.2323 10 6 0.1521 -2.4172 1.0952 11 6 0.3375 -3.5391 2.1231 12 8 0.6696 -4.7515 1.4418 13 6 1.9020 -4.6980 0.7192 14 6 1.7933 -3.6343 -0.3850 15 1 1.0709 -3.9536 -1.1363 16 6 3.1607 -3.4270 -1.0393 17 7 3.0535 -2.4019 -2.0805 18 6 4.1409 -2.0510 -2.7952 19 8 5.2081 -2.5841 -2.5767 20 6 4.0304 -0.9969 -3.8666 21 6 5.3776 -0.7917 -4.5101 22 6 6.2437 0.1680 -3.9813 23 6 7.4705 0.3930 -4.5149 24 6 7.8863 -0.3492 -5.6408 25 6 9.0271 -0.3793 -6.4211 26 7 8.8513 -1.3064 -7.3723 27 1 9.5010 -1.5324 -8.0562 28 7 7.5917 -1.9006 -7.2333 29 6 6.9720 -1.3562 -6.2020 30 6 5.7133 -1.5402 -5.5904 31 1 -0.4850 0.8400 -0.0040 32 1 0.0388 -1.4629 1.6097 33 1 -0.7328 -2.6152 0.4903 34 1 1.1422 -3.2749 2.8092 35 1 -0.5876 -3.6768 2.6827 36 1 2.7124 -4.4380 1.4003 37 1 2.1025 -5.6703 0.2691 38 1 3.8792 -3.1053 -0.2853 39 1 3.4962 -4.3635 -1.4848 40 1 2.2000 -1.9753 -2.2549 41 1 3.3124 -1.3191 -4.6206 42 1 3.6943 -0.0603 -3.4215 43 1 5.9302 0.7432 -3.1227 44 1 8.1226 1.1383 -4.0838 45 1 9.9051 0.2351 -6.2871 46 1 5.0216 -2.2722 -5.9802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484608783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:20 Heat of formation + Delta-G solvation = 43.713856 kcal Electronic energy + Delta-G solvation = -30045.976792 eV Core-core repulsion = 25938.222633 eV Total energy + Delta-G solvation = -4107.754159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.27856 -39.41009 -38.39814 -37.18510 -35.25998 -33.52702 -32.43592 -32.00572 -31.43190 -30.41996 -28.85398 -28.08878 -27.13495 -25.26514 -23.47670 -23.40408 -21.86473 -21.29445 -20.71800 -19.82569 -19.50905 -18.14802 -17.07662 -16.71294 -16.13358 -15.95727 -15.77662 -15.38842 -14.97707 -14.91107 -14.60498 -14.56429 -14.20403 -13.93265 -13.84318 -13.65160 -13.27976 -12.88417 -12.85008 -12.61698 -12.09374 -11.87338 -11.64212 -11.57799 -11.47364 -11.35814 -11.01762 -10.87882 -10.73838 -10.41811 -10.34460 -10.31614 -10.27333 -10.04784 -9.66517 -9.40625 -8.97817 -8.66929 -8.57665 -8.22336 -7.61058 -6.73328 -5.91336 -3.41257 0.60720 1.83323 2.43200 2.59306 3.22924 3.27780 3.35057 3.36716 3.70251 4.09048 4.23004 4.33791 4.51407 4.54612 4.91732 5.06945 5.14771 5.20108 5.25923 5.30435 5.47094 5.60870 5.62244 5.62368 5.73117 5.76292 5.84043 5.87936 6.03567 6.12485 6.16518 6.21342 6.26174 6.33721 6.45160 6.53248 6.54847 6.77132 6.78634 6.91222 6.95628 7.07347 7.16164 7.48646 7.53460 7.69550 7.87157 8.25613 8.29953 8.89145 9.04977 9.65317 10.24996 11.15096 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.002892 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.563157 B = 9679.161493 C =11016.323321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.009 3.991 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.255 4.255 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.137 3.863 17 N -0.696 5.696 18 C 0.512 3.488 19 O -0.555 6.555 20 C -0.110 4.110 21 C -0.007 4.007 22 C -0.130 4.130 23 C -0.052 4.052 24 C -0.204 4.204 25 C 0.075 3.925 26 N -0.432 5.432 27 H 0.441 0.559 28 N -0.312 5.312 29 C 0.112 3.888 30 C -0.098 4.098 31 H 0.256 0.744 32 H 0.092 0.908 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.415 0.585 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.185 0.815 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.752 -0.120 -9.499 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.191 4.191 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.091 0.909 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.312 6.312 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.348 5.348 18 C 0.297 3.703 19 O -0.434 6.434 20 C -0.150 4.150 21 C -0.012 4.012 22 C -0.149 4.149 23 C -0.072 4.072 24 C -0.214 4.214 25 C -0.082 4.082 26 N -0.132 5.132 27 H 0.284 0.716 28 N -0.141 5.141 29 C -0.041 4.041 30 C -0.120 4.120 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.253 0.747 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.202 0.798 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.154 -1.407 -10.300 15.994 hybrid contribution 0.591 1.936 0.331 2.052 sum 12.745 0.530 -9.969 16.190 Atomic orbital electron populations 1.69966 1.05207 1.25793 1.53462 1.25155 0.95292 0.98210 1.00397 0.86458 0.78947 0.83457 0.78464 1.20528 1.21586 1.20989 1.19211 0.91343 0.83360 1.44562 0.90851 1.44096 1.31927 1.02904 1.52741 1.21413 0.88872 0.96867 0.91014 1.23347 0.99094 0.86478 0.95379 1.87800 1.40225 1.35882 1.67243 1.22947 0.86597 0.98740 0.94046 1.21515 0.93794 0.89248 0.93655 0.94085 1.21126 0.97376 0.90235 0.89991 1.45998 1.12559 1.40642 1.35577 1.20251 0.84198 0.83275 0.82549 1.90670 1.28033 1.55498 1.69169 1.20786 0.95614 1.00611 0.98009 1.18849 0.94780 0.94307 0.93270 1.20483 0.94287 0.99369 1.00783 1.20131 0.95773 0.97789 0.93495 1.19656 0.95188 1.04455 1.02067 1.22626 0.99546 0.94773 0.91273 1.46269 1.14765 1.27681 1.24471 0.71555 1.77659 0.92417 1.22206 1.21786 1.20867 0.95504 0.94606 0.93157 1.19611 0.93533 1.01517 0.97296 0.93386 0.88970 0.95280 0.94152 0.90283 0.93506 0.89977 0.91621 0.92450 0.74691 0.87991 0.87420 0.85892 0.85912 0.79764 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.65 11.13 55.49 0.62 -23.03 16 2 C 0.01 0.22 5.06 -17.43 -0.09 0.14 16 3 Si 0.90 19.99 29.57 -169.99 -5.03 14.96 16 4 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.13 7.06 -15.06 -0.11 -6.23 16 8 H 0.07 1.79 5.82 -52.49 -0.31 1.48 16 9 N -0.59 -13.31 3.03 -164.06 -0.50 -13.81 16 10 C 0.14 3.22 5.37 -3.54 -0.02 3.20 16 11 C 0.03 0.67 6.98 37.31 0.26 0.93 16 12 O -0.39 -7.62 10.74 -35.23 -0.38 -8.00 16 13 C 0.06 0.98 6.31 37.53 0.24 1.22 16 14 C 0.12 2.41 3.23 -67.21 -0.22 2.19 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.51 4.46 -4.04 -0.02 2.49 16 17 N -0.70 -12.68 3.78 -60.29 -0.23 -12.91 16 18 C 0.51 9.24 7.82 -10.98 -0.09 9.15 16 19 O -0.55 -11.71 16.03 5.56 0.09 -11.62 16 20 C -0.11 -1.63 5.78 -29.03 -0.17 -1.80 16 21 C -0.01 -0.11 4.33 -105.01 -0.45 -0.56 16 22 C -0.13 -1.87 9.51 -39.97 -0.38 -2.25 16 23 C -0.05 -0.65 10.09 -39.41 -0.40 -1.05 16 24 C -0.20 -2.63 6.33 -105.19 -0.67 -3.30 16 25 C 0.07 0.67 12.08 -16.61 -0.20 0.47 16 26 N -0.43 -4.05 7.18 30.84 0.22 -3.83 16 27 H 0.44 2.26 8.96 -182.70 -1.64 0.62 16 28 N -0.31 -4.41 12.70 33.26 0.42 -3.99 16 29 C 0.11 1.69 7.49 -83.05 -0.62 1.07 16 30 C -0.10 -1.50 9.65 -39.41 -0.38 -1.88 16 31 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 32 H 0.09 2.27 6.32 -51.93 -0.33 1.94 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.07 1.31 7.56 -51.93 -0.39 0.92 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.42 7.81 7.32 -40.82 -0.30 7.51 16 41 H 0.10 1.25 8.06 -51.93 -0.42 0.83 16 42 H 0.11 1.55 8.07 -51.93 -0.42 1.13 16 43 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -32.47 376.67 -9.99 -42.46 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.59 Total: 10.29 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -3.31 Total: 3.79 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: 0.54 Total: -57.57 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.29 Total: -19.61 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.47 -9.99 -42.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484608783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.177 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds