Wall clock time and date at job start Wed Apr 1 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00351 * 2 1 4 4 H 1.48503 * 109.47129 * 239.72660 * 3 2 1 5 5 H 1.48500 * 109.46830 * 359.72581 * 3 2 1 6 6 H 1.48497 * 109.46958 * 119.72420 * 3 2 1 7 7 C 1.38812 * 119.99583 * 179.72475 * 2 1 3 8 8 H 1.08001 * 119.99737 * 169.26870 * 7 2 1 9 9 N 1.36937 * 120.00211 * 349.26670 * 7 2 1 10 10 C 1.47151 * 120.98368 * 328.91835 * 9 7 2 11 11 C 1.53290 * 108.38665 * 230.51059 * 10 9 7 12 12 O 1.42970 * 109.22284 * 307.69629 * 11 10 9 13 13 C 1.42964 * 114.16217 * 62.57719 * 12 11 10 14 14 C 1.47153 * 120.98106 * 148.63258 * 9 7 2 15 15 H 1.09005 * 109.68252 * 249.21294 * 14 9 7 16 16 C 1.53001 * 109.68459 * 9.76740 * 14 9 7 17 17 N 1.46500 * 109.46964 * 299.30998 * 16 14 9 18 18 C 1.34776 * 119.99693 * 179.97438 * 17 16 14 19 19 O 1.21274 * 120.00237 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99611 * 179.97438 * 18 17 16 21 21 C 1.50703 * 109.47013 * 179.97438 * 20 18 17 22 22 C 1.39673 * 119.09540 * 269.73237 * 21 20 18 23 23 C 1.35663 * 121.72705 * 179.72619 * 22 21 20 24 24 C 1.41118 * 119.53547 * 0.55727 * 23 22 21 25 25 C 1.38248 * 134.81910 * 179.73177 * 24 23 22 26 26 N 1.33990 * 107.90820 * 179.97438 * 25 24 23 27 27 H 0.96998 * 125.02170 * 180.02562 * 26 25 24 28 28 N 1.39966 * 109.95638 * 0.02562 * 26 25 24 29 29 C 1.32058 * 108.95830 * 359.97438 * 28 26 25 30 30 C 1.35646 * 119.08917 * 90.00291 * 21 20 18 31 31 H 0.96999 * 119.99885 * 0.27501 * 1 2 3 32 32 H 1.09001 * 109.68310 * 350.23497 * 10 9 7 33 33 H 1.09001 * 109.68469 * 110.74661 * 10 9 7 34 34 H 1.08996 * 109.51193 * 67.61881 * 11 10 9 35 35 H 1.09001 * 109.51460 * 187.72405 * 11 10 9 36 36 H 1.09007 * 109.51132 * 57.34868 * 13 12 11 37 37 H 1.09008 * 109.50893 * 177.44298 * 13 12 11 38 38 H 1.09005 * 109.46532 * 59.30675 * 16 14 9 39 39 H 1.08997 * 109.47344 * 179.30956 * 16 14 9 40 40 H 0.96995 * 120.00040 * 0.02562 * 17 16 14 41 41 H 1.08993 * 109.47470 * 300.00242 * 20 18 17 42 42 H 1.09007 * 109.47028 * 60.00364 * 20 18 17 43 43 H 1.08001 * 119.13579 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.23051 * 180.26901 * 23 22 21 45 45 H 1.07998 * 126.04839 * 0.02562 * 25 24 23 46 46 H 1.07997 * 120.20086 * 359.97438 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2853 2.7464 -0.0067 6 1 3.0989 1.6992 1.2158 7 6 2.0101 -1.2022 0.0058 8 1 3.0760 -1.2112 -0.1683 9 7 1.3434 -2.3766 0.2323 10 6 0.1521 -2.4172 1.0952 11 6 0.3375 -3.5391 2.1231 12 8 0.6696 -4.7515 1.4418 13 6 1.9020 -4.6980 0.7192 14 6 1.7933 -3.6343 -0.3850 15 1 1.0709 -3.9536 -1.1363 16 6 3.1607 -3.4270 -1.0393 17 7 3.0535 -2.4019 -2.0805 18 6 4.1409 -2.0510 -2.7952 19 8 5.2081 -2.5841 -2.5767 20 6 4.0304 -0.9969 -3.8666 21 6 5.3776 -0.7917 -4.5101 22 6 6.2437 0.1680 -3.9813 23 6 7.4705 0.3930 -4.5149 24 6 7.8863 -0.3492 -5.6408 25 6 9.0271 -0.3793 -6.4211 26 7 8.8513 -1.3064 -7.3723 27 1 9.5010 -1.5324 -8.0562 28 7 7.5917 -1.9006 -7.2333 29 6 6.9720 -1.3562 -6.2020 30 6 5.7133 -1.5402 -5.5904 31 1 -0.4850 0.8400 -0.0040 32 1 0.0388 -1.4629 1.6097 33 1 -0.7328 -2.6152 0.4903 34 1 1.1422 -3.2749 2.8092 35 1 -0.5876 -3.6768 2.6827 36 1 2.7124 -4.4380 1.4003 37 1 2.1025 -5.6703 0.2691 38 1 3.8792 -3.1053 -0.2853 39 1 3.4962 -4.3635 -1.4848 40 1 2.2000 -1.9753 -2.2549 41 1 3.3124 -1.3191 -4.6206 42 1 3.6943 -0.0603 -3.4215 43 1 5.9302 0.7432 -3.1227 44 1 8.1226 1.1383 -4.0838 45 1 9.9051 0.2351 -6.2871 46 1 5.0216 -2.2722 -5.9802 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484608783.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:19 Heat of formation + Delta-G solvation = 21.507429 kcal Electronic energy + Delta-G solvation = -30046.939735 eV Core-core repulsion = 25938.222633 eV Total energy + Delta-G solvation = -4108.717102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.17493 -40.86579 -39.91682 -38.27441 -36.85775 -35.22036 -33.58291 -33.15427 -32.84668 -32.05952 -29.78362 -29.31694 -28.80822 -26.70478 -25.20280 -24.45380 -23.34020 -22.43790 -21.63228 -21.41389 -20.99554 -18.98499 -18.71977 -17.74523 -17.64365 -17.54557 -17.20469 -16.64376 -16.31143 -16.18394 -15.94257 -15.80405 -15.74438 -15.39753 -15.06006 -14.92619 -14.82469 -14.52291 -14.21317 -13.77287 -13.56936 -13.14938 -12.93531 -12.87205 -12.67509 -12.65916 -12.56907 -12.48766 -12.38181 -12.10703 -11.98012 -11.81809 -11.28565 -11.28401 -11.24799 -10.91836 -10.58019 -10.51711 -9.78513 -9.57716 -8.57775 -8.57024 -7.81795 -5.33484 -0.29485 0.82844 1.47863 1.50465 1.52872 1.56866 1.80754 1.90086 2.40585 2.52051 2.94451 3.06480 3.31037 3.34799 3.48121 3.70118 3.91044 4.07262 4.10449 4.16371 4.26284 4.33566 4.36291 4.41884 4.49585 4.59837 4.62739 4.64239 4.66391 4.68068 4.71533 4.76287 4.80740 5.02788 5.14116 5.23681 5.33365 5.45887 5.55989 5.62283 5.68369 5.74611 5.74874 5.95590 6.31842 6.32425 6.41384 6.62192 6.78093 7.15225 7.42326 7.80914 8.37739 9.22542 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.002892 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.563157 B = 9679.161493 C =11016.323321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.032 4.032 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.398 6.398 13 C 0.057 3.943 14 C 0.127 3.873 15 H 0.037 0.963 16 C 0.144 3.856 17 N -0.697 5.697 18 C 0.513 3.487 19 O -0.586 6.586 20 C -0.105 4.105 21 C -0.013 4.013 22 C -0.171 4.171 23 C -0.031 4.031 24 C -0.242 4.242 25 C 0.119 3.881 26 N -0.415 5.415 27 H 0.460 0.540 28 N -0.356 5.356 29 C 0.086 3.914 30 C -0.124 4.124 31 H 0.249 0.751 32 H 0.066 0.934 33 H 0.006 0.994 34 H 0.043 0.957 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.122 0.878 44 H 0.157 0.843 45 H 0.244 0.756 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.431 0.087 -10.202 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.229 4.229 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.088 0.912 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.317 6.317 13 C -0.022 4.022 14 C 0.020 3.980 15 H 0.055 0.945 16 C 0.019 3.981 17 N -0.348 5.348 18 C 0.300 3.700 19 O -0.467 6.467 20 C -0.144 4.144 21 C -0.017 4.017 22 C -0.190 4.190 23 C -0.051 4.051 24 C -0.252 4.252 25 C -0.040 4.040 26 N -0.117 5.117 27 H 0.308 0.692 28 N -0.186 5.186 29 C -0.066 4.066 30 C -0.145 4.145 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.122 0.878 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.250 0.750 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.140 0.860 44 H 0.174 0.826 45 H 0.260 0.740 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.847 -1.239 -11.035 18.540 hybrid contribution -0.070 1.842 0.471 1.903 sum 14.777 0.604 -10.564 18.175 Atomic orbital electron populations 1.70099 1.06291 1.25712 1.55306 1.25648 0.95738 1.00427 1.01043 0.85698 0.77853 0.80555 0.78582 1.18898 1.22422 1.21711 1.19277 0.91159 0.84006 1.42933 0.91209 1.44298 1.31739 1.03670 1.53337 1.21237 0.88150 0.96966 0.91300 1.23218 1.00441 0.85231 0.94293 1.87803 1.40984 1.35553 1.67329 1.23064 0.86032 0.99709 0.93347 1.21622 0.93887 0.88320 0.94152 0.94529 1.21054 0.96296 0.91011 0.89712 1.46030 1.12526 1.40655 1.35579 1.20734 0.83385 0.83269 0.82609 1.90645 1.29093 1.56791 1.70188 1.20784 0.96621 0.99516 0.97488 1.18906 0.94848 0.94694 0.93298 1.20595 0.95670 1.00729 1.02033 1.20499 0.95128 0.97036 0.92423 1.20071 0.96547 1.05122 1.03450 1.23497 0.99394 0.92771 0.88317 1.46356 1.13790 1.26815 1.24725 0.69227 1.77585 0.94502 1.24024 1.22465 1.21055 0.95986 0.95717 0.93847 1.19672 0.94434 1.02274 0.98166 0.94114 0.91551 0.97565 0.93902 0.87833 0.93319 0.86663 0.93323 0.90672 0.75031 0.85878 0.87099 0.86031 0.82586 0.73984 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.95 11.13 21.65 0.24 -49.71 16 2 C -0.03 -1.61 5.06 84.86 0.43 -1.18 16 3 Si 0.94 41.40 29.57 68.60 2.03 43.43 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.30 -13.37 7.11 99.48 0.71 -12.67 16 6 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.24 -11.80 7.06 84.03 0.59 -11.21 16 8 H 0.07 3.43 5.82 -2.91 -0.02 3.41 16 9 N -0.60 -27.39 3.03 -672.96 -2.04 -29.43 16 10 C 0.15 6.76 5.37 86.35 0.46 7.22 16 11 C 0.05 1.71 6.98 72.08 0.50 2.21 16 12 O -0.40 -14.72 10.74 -148.98 -1.60 -16.32 16 13 C 0.06 1.91 6.31 72.22 0.46 2.36 16 14 C 0.13 4.80 3.23 45.11 0.15 4.95 16 15 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 16 C 0.14 5.21 4.46 86.38 0.38 5.60 16 17 N -0.70 -25.54 3.78 -463.06 -1.75 -27.29 16 18 C 0.51 18.71 7.82 87.66 0.69 19.40 16 19 O -0.59 -25.07 16.03 -3.01 -0.05 -25.12 16 20 C -0.10 -3.13 5.78 29.10 0.17 -2.96 16 21 C -0.01 -0.39 4.33 -20.12 -0.09 -0.48 16 22 C -0.17 -4.87 9.51 22.02 0.21 -4.66 16 23 C -0.03 -0.72 10.09 22.38 0.23 -0.49 16 24 C -0.24 -5.71 6.33 -20.23 -0.13 -5.84 16 25 C 0.12 1.61 12.08 84.37 1.02 2.63 16 26 N -0.42 -6.55 7.18 -56.34 -0.40 -6.95 16 27 H 0.46 3.12 8.96 -213.41 -1.91 1.21 16 28 N -0.36 -9.80 12.70 -48.70 -0.62 -10.42 16 29 C 0.09 2.59 7.49 42.16 0.32 2.90 16 30 C -0.12 -3.90 9.65 22.38 0.22 -3.68 16 31 H 0.25 13.29 8.31 -92.71 -0.77 12.52 16 32 H 0.07 3.35 6.32 -2.39 -0.02 3.34 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.10 3.32 8.14 -2.39 -0.02 3.31 16 36 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 38 H 0.05 1.94 7.56 -2.38 -0.02 1.92 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.41 15.69 7.32 -92.71 -0.68 15.01 16 41 H 0.12 3.06 8.06 -2.39 -0.02 3.04 16 42 H 0.11 3.22 8.07 -2.38 -0.02 3.20 16 43 H 0.12 3.35 8.06 -2.91 -0.02 3.32 16 44 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.24 0.30 8.06 -2.91 -0.02 0.28 16 46 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -72.91 376.67 -0.15 -73.05 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -1.56 Total: 31.99 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 5.60 Total: 16.76 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -4.57 Total: -123.80 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -1.65 Total: -41.43 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -72.91 -0.15 -73.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484608783.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.561 kcal (2) G-P(sol) polarization free energy of solvation -72.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds