Wall clock time and date at job start Wed Apr 1 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48499 * 109.47253 * 239.99913 * 3 2 1 5 5 H 1.48499 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46941 * 120.00021 * 3 2 1 7 7 C 1.38816 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99615 * 180.02562 * 7 2 1 9 9 N 1.36927 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99936 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.50033 * 60.06454 * 10 9 7 12 12 O 1.42893 * 109.46832 * 304.94012 * 11 10 9 13 13 C 1.53048 * 109.49859 * 180.16513 * 10 9 7 14 14 C 1.53036 * 109.53866 * 58.58743 * 13 10 9 15 15 C 1.52756 * 109.38420 * 61.24086 * 14 13 10 16 16 N 1.46925 * 109.01018 * 305.58714 * 15 14 13 17 17 C 1.34771 * 120.63312 * 233.58808 * 16 15 14 18 18 O 1.21642 * 120.00147 * 183.61168 * 17 16 15 19 19 C 1.47225 * 120.00151 * 3.60860 * 17 16 15 20 20 C 1.38939 * 120.85972 * 307.11072 * 19 17 16 21 21 C 1.39744 * 119.29695 * 179.97438 * 20 19 17 22 22 C 1.35116 * 121.14036 * 359.97438 * 21 20 19 23 23 N 1.36154 * 121.71827 * 0.02562 * 22 21 20 24 24 C 1.36996 * 132.63834 * 180.02562 * 23 22 21 25 25 C 1.34964 * 107.15213 * 180.20072 * 24 23 22 26 26 N 1.33738 * 108.59937 * 359.60165 * 25 24 23 27 27 C 1.31973 * 109.17703 * 0.40628 * 26 25 24 28 28 C 1.46926 * 118.73665 * 53.30903 * 16 15 14 29 29 H 0.96997 * 119.99954 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00293 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.46591 * 64.93548 * 11 10 9 32 32 H 1.08997 * 109.47562 * 184.93476 * 11 10 9 33 33 H 0.96705 * 113.99600 * 179.97438 * 12 11 10 34 34 H 1.09007 * 109.45799 * 178.60810 * 13 10 9 35 35 H 1.08996 * 109.45480 * 298.56153 * 13 10 9 36 36 H 1.08995 * 109.49802 * 181.31666 * 14 13 10 37 37 H 1.09006 * 109.49465 * 301.37941 * 14 13 10 38 38 H 1.09003 * 109.51022 * 185.70834 * 15 14 13 39 39 H 1.08993 * 109.43554 * 65.42569 * 15 14 13 40 40 H 1.08000 * 120.35510 * 359.94886 * 20 19 17 41 41 H 1.07994 * 119.43221 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.14202 * 180.02562 * 22 21 20 43 43 H 1.08009 * 126.42683 * 359.93326 * 24 23 22 44 44 H 1.08001 * 125.69614 * 179.75849 * 25 24 23 45 45 H 1.09001 * 109.58294 * 66.43428 * 28 16 15 46 46 H 1.09004 * 109.58950 * 186.85555 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 2.9367 -3.7392 1.2493 12 8 3.7867 -2.5922 1.3104 13 6 1.0641 -4.8205 -0.0047 14 6 0.1632 -4.7197 -1.2377 15 6 1.0190 -4.8099 -2.4997 16 7 2.0732 -3.7884 -2.4371 17 6 2.2392 -2.9102 -3.4459 18 8 3.1564 -2.1118 -3.4125 19 6 1.3105 -2.9171 -4.5882 20 6 1.0556 -4.0873 -5.2925 21 6 0.1678 -4.0567 -6.3712 22 6 -0.4456 -2.9103 -6.7390 23 7 -0.2281 -1.7388 -6.0801 24 6 -0.7175 -0.4713 -6.2546 25 6 -0.1520 0.3076 -5.3085 26 7 0.6578 -0.4498 -4.5607 27 6 0.6301 -1.6899 -5.0112 28 6 2.9390 -3.7385 -1.2511 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 2.3043 -3.7704 2.1366 32 1 3.5466 -4.6415 1.2059 33 1 4.3727 -2.5775 2.0796 34 1 1.6096 -5.7639 -0.0297 35 1 0.4524 -4.7787 0.8965 36 1 -0.5596 -5.5354 -1.2278 37 1 -0.3645 -3.7659 -1.2257 38 1 0.3945 -4.6372 -3.3762 39 1 1.4722 -5.7993 -2.5606 40 1 1.5389 -5.0108 -5.0095 41 1 -0.0316 -4.9649 -6.9204 42 1 -1.1261 -2.9236 -7.5775 43 1 -1.4204 -0.1536 -7.0107 44 1 -0.3265 1.3651 -5.1757 45 1 3.5520 -4.6389 -1.2082 46 1 3.5810 -2.8592 -1.3040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484852315.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:58 Heat of formation + Delta-G solvation = 18.030590 kcal Electronic energy + Delta-G solvation = -32184.875032 eV Core-core repulsion = 28076.007163 eV Total energy + Delta-G solvation = -4108.867869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.65350 -41.26221 -39.26318 -38.10235 -37.12582 -35.56651 -34.60892 -33.72795 -32.54444 -31.24015 -30.48690 -29.80055 -27.13199 -26.59710 -25.55694 -24.87874 -23.63364 -23.00208 -22.81563 -21.04735 -19.82566 -19.26640 -18.69377 -18.37161 -17.77745 -17.26148 -17.17857 -16.76696 -16.60774 -16.38417 -15.99917 -15.66742 -15.62667 -15.11107 -14.92474 -14.76466 -14.57495 -14.42501 -14.16038 -13.75571 -13.55769 -13.38054 -13.23340 -13.04038 -12.89798 -12.85210 -12.74715 -12.57770 -12.11445 -12.05663 -11.83401 -11.60389 -11.33518 -11.29529 -11.02224 -10.87184 -10.67094 -10.54529 -9.78825 -9.50382 -8.86228 -8.75489 -7.78982 -4.97249 -0.48707 0.33711 1.32250 1.39912 1.40931 1.46978 1.86986 1.97538 2.19113 2.59870 2.65177 3.21004 3.38643 3.45451 3.71314 3.72657 3.86774 3.92373 3.94814 3.98458 4.13110 4.20261 4.33083 4.40105 4.47389 4.54751 4.58732 4.62943 4.66134 4.78342 4.80353 4.83748 4.94198 4.96378 5.03625 5.05858 5.09268 5.21097 5.45838 5.50508 5.53697 5.62190 5.75400 5.93698 6.15653 6.45908 6.55438 7.02532 7.19308 7.31926 7.55535 8.25426 8.45964 9.45431 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005663 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.513764 B = 4943.400465 C = 6674.498675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.084 4.084 3 Si 0.941 3.059 4 H -0.312 1.312 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.160 4.160 8 H 0.076 0.924 9 N -0.707 5.707 10 C 0.172 3.828 11 C 0.075 3.925 12 O -0.573 6.573 13 C -0.107 4.107 14 C -0.130 4.130 15 C 0.097 3.903 16 N -0.585 5.585 17 C 0.563 3.437 18 O -0.584 6.584 19 C -0.131 4.131 20 C -0.036 4.036 21 C -0.147 4.147 22 C 0.076 3.924 23 N -0.373 5.373 24 C -0.073 4.073 25 C -0.015 4.015 26 N -0.544 5.544 27 C 0.220 3.780 28 C 0.115 3.885 29 H 0.236 0.764 30 H 0.368 0.632 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.373 0.627 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.026 0.974 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.182 0.818 41 H 0.215 0.785 42 H 0.217 0.783 43 H 0.238 0.762 44 H 0.182 0.818 45 H 0.089 0.911 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -21.274 -14.139 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.274 4.274 3 Si 0.776 3.224 4 H -0.241 1.241 5 H -0.226 1.226 6 H -0.203 1.203 7 C -0.293 4.293 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.081 3.919 11 C -0.005 4.005 12 O -0.379 6.379 13 C -0.145 4.145 14 C -0.168 4.168 15 C -0.024 4.024 16 N -0.315 5.315 17 C 0.352 3.648 18 O -0.464 6.464 19 C -0.137 4.137 20 C -0.060 4.060 21 C -0.167 4.167 22 C -0.045 4.045 23 N -0.046 5.046 24 C -0.202 4.202 25 C -0.163 4.163 26 N -0.264 5.264 27 C -0.027 4.027 28 C -0.010 4.010 29 H 0.044 0.956 30 H 0.201 0.799 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.220 0.780 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.045 0.955 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.200 0.800 41 H 0.232 0.768 42 H 0.234 0.766 43 H 0.254 0.746 44 H 0.199 0.801 45 H 0.107 0.893 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.491 -20.247 -14.024 24.876 hybrid contribution 0.116 2.185 0.471 2.238 sum -3.375 -18.062 -13.553 22.832 Atomic orbital electron populations 1.69738 1.05599 1.24112 1.63239 1.25083 0.95990 0.99497 1.06857 0.85634 0.77406 0.82561 0.76823 1.24128 1.22553 1.20350 1.19450 0.91173 0.84551 1.34143 0.90597 1.42474 1.04602 1.00349 1.87154 1.20505 0.92075 0.87337 0.92027 1.22732 0.92310 0.87727 0.97722 1.86895 1.55636 1.45515 1.49812 1.21639 0.97026 0.97213 0.98599 1.21778 0.98437 1.01999 0.94555 1.22224 0.89086 0.91639 0.99492 1.47794 1.34287 1.32313 1.17121 1.18116 0.83875 0.79700 0.83142 1.90766 1.35616 1.39969 1.80019 1.20114 1.01839 0.91360 1.00356 1.22102 0.95070 0.95613 0.93178 1.21276 0.97646 0.99438 0.98292 1.22736 1.00999 0.82529 0.98261 1.43187 1.29732 1.09479 1.22189 1.23239 1.08434 0.81380 1.07171 1.23016 0.97350 1.01342 0.94616 1.70711 1.24321 1.02022 1.29325 1.21782 0.96846 0.93652 0.90420 1.22021 0.92811 1.01173 0.84975 0.95565 0.79949 0.94424 0.91224 0.78011 0.87200 0.91595 0.86954 0.95543 0.89018 0.86537 0.80043 0.76824 0.76647 0.74564 0.80084 0.89333 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -67.01 13.06 21.65 0.28 -66.73 16 2 C -0.08 -5.64 5.50 84.86 0.47 -5.18 16 3 Si 0.94 56.96 29.55 68.60 2.03 58.99 16 4 H -0.31 -20.02 7.11 99.48 0.71 -19.31 16 5 H -0.30 -17.86 7.11 99.48 0.71 -17.15 16 6 H -0.28 -15.71 7.11 99.48 0.71 -15.01 16 7 C -0.16 -10.01 8.07 84.04 0.68 -9.33 16 8 H 0.08 4.93 5.26 -2.91 -0.02 4.91 16 9 N -0.71 -37.25 4.75 -302.99 -1.44 -38.69 16 10 C 0.17 6.57 0.68 3.69 0.00 6.57 16 11 C 0.08 2.56 6.09 71.98 0.44 3.00 16 12 O -0.57 -23.30 10.05 -148.98 -1.50 -24.80 16 13 C -0.11 -2.89 4.77 30.62 0.15 -2.74 16 14 C -0.13 -3.44 5.90 30.53 0.18 -3.26 16 15 C 0.10 2.33 5.48 86.22 0.47 2.81 16 16 N -0.58 -21.67 2.90 -823.84 -2.39 -24.06 16 17 C 0.56 25.61 7.26 86.61 0.63 26.24 16 18 O -0.58 -33.93 16.52 -4.16 -0.07 -34.00 16 19 C -0.13 -4.80 5.09 -18.58 -0.09 -4.90 16 20 C -0.04 -0.73 7.52 22.80 0.17 -0.56 16 21 C -0.15 -1.73 9.91 21.91 0.22 -1.51 16 22 C 0.08 1.15 10.88 83.30 0.91 2.06 16 23 N -0.37 -10.60 2.94 -347.19 -1.02 -11.62 16 24 C -0.07 -1.98 11.76 83.13 0.98 -1.00 16 25 C -0.01 -0.58 11.83 83.65 0.99 0.41 16 26 N -0.54 -27.87 11.30 -189.72 -2.14 -30.01 16 27 C 0.22 9.21 7.81 135.76 1.06 10.27 16 28 C 0.11 4.51 4.90 86.36 0.42 4.94 16 29 H 0.24 16.18 8.31 -92.71 -0.77 15.41 16 30 H 0.37 21.08 6.43 -92.71 -0.60 20.48 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.37 11.10 9.12 -74.05 -0.68 10.43 16 34 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.03 0.99 6.75 -2.38 -0.02 0.98 16 38 H 0.09 2.02 4.70 -2.39 -0.01 2.01 16 39 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.18 2.28 7.32 -2.91 -0.02 2.25 16 41 H 0.22 0.00 8.06 -2.91 -0.02 -0.03 16 42 H 0.22 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.24 3.42 8.06 -2.91 -0.02 3.40 16 44 H 0.18 6.27 8.06 -2.91 -0.02 6.25 16 45 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 46 H 0.04 2.31 5.83 -2.39 -0.01 2.30 16 Total: -1.00 -113.55 368.79 1.19 -112.35 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: -0.23 Total: 30.76 kcal Atomic # 6 Polarization: 20.15 SS G_CDS: 7.66 Total: 27.82 kcal Atomic # 7 Polarization: -164.41 SS G_CDS: -6.71 Total: -171.11 kcal Atomic # 8 Polarization: -57.24 SS G_CDS: -1.57 Total: -58.80 kcal Atomic # 14 Polarization: 56.96 SS G_CDS: 2.03 Total: 58.99 kcal Total: -113.55 1.19 -112.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484852315.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.385 kcal (2) G-P(sol) polarization free energy of solvation -113.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -112.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds