Wall clock time and date at job start Wed Apr 1 2020 02:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00164 * 2 1 4 4 H 1.48506 * 109.46984 * 239.99896 * 3 2 1 5 5 H 1.48495 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47494 * 120.00066 * 3 2 1 7 7 C 1.38813 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99929 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47038 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49472 * 55.06527 * 11 10 9 13 13 C 1.53041 * 109.49522 * 175.16399 * 11 10 9 14 14 C 1.53348 * 109.60471 * 181.32735 * 13 11 10 15 15 C 1.53194 * 109.14957 * 298.71016 * 14 13 11 16 16 N 1.46928 * 108.89275 * 54.57965 * 15 14 13 17 17 C 1.34772 * 120.63155 * 126.29960 * 16 15 14 18 18 O 1.21602 * 120.00156 * 176.21816 * 17 16 15 19 19 C 1.47513 * 120.00068 * 356.22019 * 17 16 15 20 20 C 1.40151 * 119.94324 * 49.62638 * 19 17 16 21 21 C 1.36214 * 120.48916 * 179.74530 * 20 19 17 22 22 C 1.40020 * 120.08070 * 0.54447 * 21 20 19 23 23 N 1.35565 * 133.26058 * 179.75943 * 22 21 20 24 24 C 1.30916 * 109.70996 * 179.97438 * 23 22 21 25 25 O 1.35200 * 125.01505 * 179.97438 * 24 23 22 26 26 N 1.36257 * 109.97179 * 359.97438 * 24 23 22 27 27 H 0.97008 * 126.39385 * 180.02562 * 26 24 23 28 28 C 1.38556 * 107.20959 * 0.02562 * 26 24 23 29 29 C 1.38211 * 133.90135 * 180.02562 * 28 26 24 30 30 C 1.46928 * 118.73671 * 306.31757 * 16 15 14 31 31 H 0.97001 * 119.99547 * 0.02562 * 1 2 3 32 32 H 0.96993 * 120.00283 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47044 * 60.00258 * 10 9 7 34 34 H 1.09000 * 109.47253 * 300.00208 * 10 9 7 35 35 H 1.09001 * 109.45645 * 301.33636 * 13 11 10 36 36 H 1.08995 * 109.45915 * 61.30774 * 13 11 10 37 37 H 1.08997 * 109.68340 * 178.74965 * 14 13 11 38 38 H 1.08995 * 109.47760 * 58.54506 * 14 13 11 39 39 H 1.09001 * 109.58400 * 294.72335 * 15 14 13 40 40 H 1.09000 * 109.58913 * 174.43873 * 15 14 13 41 41 H 1.07998 * 119.75958 * 359.97438 * 20 19 17 42 42 H 1.07997 * 119.95781 * 180.27892 * 21 20 19 43 43 H 0.96698 * 113.99748 * 270.02117 * 25 24 23 44 44 H 1.07995 * 120.20660 * 359.95437 * 29 28 26 45 45 H 1.08997 * 109.58409 * 173.39500 * 30 16 15 46 46 H 1.08994 * 109.59299 * 293.68155 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.3797 -4.7140 -0.8409 13 6 1.8242 -6.1422 -0.1204 14 6 0.8280 -7.3076 -0.1534 15 6 0.0303 -7.3239 1.1544 16 7 -0.5873 -6.0054 1.3514 17 6 -1.9132 -5.8933 1.5654 18 8 -2.4020 -4.8038 1.7953 19 6 -2.7716 -7.0921 1.5206 20 6 -2.4141 -8.2359 2.2474 21 6 -3.2011 -9.3473 2.2182 22 6 -4.3716 -9.3584 1.4498 23 7 -5.3272 -10.2935 1.2260 24 6 -6.2358 -9.8113 0.4162 25 8 -7.3278 -10.4832 -0.0128 26 7 -5.9186 -8.5323 0.0695 27 1 -6.4274 -7.9523 -0.5184 28 6 -4.7335 -8.2150 0.7134 29 6 -3.9351 -7.0874 0.7505 30 6 0.2680 -4.8114 1.3103 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6845 -3.7146 0.8905 34 1 2.6846 -3.7146 -0.8894 35 1 2.4106 -6.1406 -1.0393 36 1 2.4897 -6.2583 0.7349 37 1 1.3673 -8.2485 -0.2623 38 1 0.1460 -7.1791 -0.9939 39 1 0.6986 -7.5425 1.9873 40 1 -0.7464 -8.0867 1.0991 41 1 -1.5098 -8.2350 2.8378 42 1 -2.9198 -10.2224 2.7851 43 1 -7.1877 -10.9802 -0.8303 44 1 -4.2098 -6.2083 0.1866 45 1 -0.3521 -3.9161 1.3554 46 1 0.9539 -4.8239 2.1573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491174399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:46 Heat of formation + Delta-G solvation = 18.976251 kcal Electronic energy + Delta-G solvation = -29543.662309 eV Core-core repulsion = 25434.835447 eV Total energy + Delta-G solvation = -4108.826862 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.58161 -40.36733 -38.53377 -37.61291 -36.59384 -34.88231 -33.65888 -32.88062 -31.67833 -30.51392 -30.13336 -29.21158 -25.74061 -25.51500 -23.57612 -23.25463 -22.95280 -22.04342 -21.38858 -20.37020 -19.51217 -19.33206 -18.11502 -17.78206 -17.02003 -16.57782 -16.26406 -15.76337 -15.39480 -14.88403 -14.71614 -14.56191 -14.41698 -14.32771 -14.14120 -13.76219 -13.47228 -13.30528 -12.95571 -12.80082 -12.62240 -12.46649 -12.25490 -12.01443 -11.98323 -11.36248 -11.17818 -11.05992 -10.98071 -10.80596 -10.64116 -10.47234 -10.39199 -10.28312 -10.00850 -9.74915 -9.57916 -8.83505 -8.80266 -8.57786 -8.41826 -6.87250 -5.69870 -2.99566 0.30790 1.02550 1.86220 2.09822 2.78195 3.00900 3.31668 3.47631 3.48413 3.51613 3.53240 4.06987 4.36387 4.58290 4.61861 4.75350 4.84179 4.87984 4.91031 4.97884 5.01050 5.16341 5.22280 5.35434 5.49619 5.60032 5.63556 5.65890 5.80824 5.82554 5.87944 5.93040 5.99313 6.04239 6.11918 6.14141 6.21951 6.23769 6.32499 6.41117 6.55534 6.65596 6.78588 6.89597 7.09396 7.28364 7.47389 7.74080 8.22962 8.47997 9.58878 10.16832 10.51041 11.52433 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002291 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.524581 B =12219.379042 C =13194.765857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.733 5.733 10 C 0.160 3.840 11 C -0.107 4.107 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.133 4.133 15 C 0.095 3.905 16 N -0.602 5.602 17 C 0.557 3.443 18 O -0.521 6.521 19 C -0.100 4.100 20 C -0.096 4.096 21 C -0.069 4.069 22 C 0.075 3.925 23 N -0.487 5.487 24 C 0.457 3.543 25 O -0.442 6.442 26 N -0.596 5.596 27 H 0.426 0.574 28 C 0.050 3.950 29 C -0.052 4.052 30 C 0.120 3.880 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.020 0.980 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.412 0.588 44 H 0.136 0.864 45 H 0.104 0.896 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.188 -26.137 -0.739 27.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.126 4.126 12 H 0.092 0.908 13 C -0.151 4.151 14 C -0.172 4.172 15 C -0.028 4.028 16 N -0.335 5.335 17 C 0.344 3.656 18 O -0.397 6.397 19 C -0.105 4.105 20 C -0.117 4.117 21 C -0.088 4.088 22 C -0.045 4.045 23 N -0.219 5.219 24 C 0.152 3.848 25 O -0.244 6.244 26 N -0.220 5.220 27 H 0.266 0.734 28 C -0.059 4.059 29 C -0.074 4.074 30 C -0.001 4.001 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.271 0.729 44 H 0.154 0.846 45 H 0.122 0.878 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.669 -26.084 0.225 27.488 hybrid contribution -0.125 1.734 -1.242 2.136 sum -8.794 -24.351 -1.017 25.910 Atomic orbital electron populations 1.69664 1.05063 1.25742 1.57382 1.24758 0.95502 0.97679 1.03009 0.86277 0.78495 0.83664 0.77776 1.21351 1.21730 1.21278 1.19158 0.90939 0.84188 1.43041 0.91276 1.42407 1.05929 0.99945 1.89500 1.20638 0.92968 0.85144 0.98018 1.21685 0.97972 0.95173 0.97790 0.90826 1.21582 0.97483 0.93702 1.02314 1.21966 0.98567 0.99084 0.97540 1.22091 0.97792 0.84898 0.98041 1.48081 1.06655 1.08297 1.70450 1.18136 0.81870 0.88191 0.77437 1.90894 1.73556 1.27634 1.47642 1.19629 0.95847 0.94774 1.00211 1.20813 1.00045 0.91358 0.99444 1.19906 0.91581 0.99107 0.98228 1.18935 0.96056 0.89538 0.99942 1.70631 1.02824 1.29863 1.18582 1.20355 0.88420 0.81440 0.94542 1.84821 1.27918 1.64564 1.47089 1.43420 1.21175 1.14845 1.42592 0.73406 1.18411 0.88820 0.97943 1.00735 1.19890 0.92343 0.95650 0.99496 1.21767 0.93300 0.87748 0.97274 0.93447 0.78109 0.96209 0.96063 0.91563 0.91700 0.90829 0.91585 0.91108 0.88975 0.84179 0.84342 0.72949 0.84620 0.87795 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.73 -18.83 5.38 -59.90 -0.32 -19.16 16 10 C 0.16 3.18 5.65 -4.03 -0.02 3.16 16 11 C -0.11 -1.69 2.38 -90.50 -0.22 -1.91 16 12 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 13 C -0.11 -1.32 5.17 -26.53 -0.14 -1.46 16 14 C -0.13 -1.27 6.11 -26.45 -0.16 -1.43 16 15 C 0.09 0.90 5.30 -3.71 -0.02 0.88 16 16 N -0.60 -8.23 2.97 -174.00 -0.52 -8.75 16 17 C 0.56 8.53 7.22 -12.48 -0.09 8.44 16 18 O -0.52 -10.50 16.46 5.28 0.09 -10.42 16 19 C -0.10 -1.19 5.05 -104.92 -0.53 -1.72 16 20 C -0.10 -0.89 7.25 -39.59 -0.29 -1.18 16 21 C -0.07 -0.63 10.03 -39.64 -0.40 -1.03 16 22 C 0.07 0.82 7.22 -84.61 -0.61 0.21 16 23 N -0.49 -5.46 11.29 -12.18 -0.14 -5.60 16 24 C 0.46 3.97 9.39 -88.91 -0.83 3.13 16 25 O -0.44 -2.53 13.62 -17.30 -0.24 -2.77 16 26 N -0.60 -4.66 6.27 -11.94 -0.07 -4.74 16 27 H 0.43 2.04 8.96 -40.82 -0.37 1.68 16 28 C 0.05 0.51 7.29 -83.89 -0.61 -0.10 16 29 C -0.05 -0.59 9.74 -39.11 -0.38 -0.97 16 30 C 0.12 1.98 5.51 -3.71 -0.02 1.96 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.38 10.57 6.89 -40.82 -0.28 10.29 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.75 4.47 -51.93 -0.23 0.52 16 41 H 0.14 1.03 6.95 -52.49 -0.36 0.66 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.41 0.06 9.06 45.56 0.41 0.47 16 44 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.10 2.16 6.23 -51.93 -0.32 1.84 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 376.81 15.07 5.68 5.68 Total: -1.00 -37.72 376.81 -9.74 -47.46 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.35 Total: 8.27 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -4.57 Total: 0.47 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: -0.33 Total: -66.49 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.15 Total: -13.19 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.72 -9.74 -47.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491174399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.437 kcal (2) G-P(sol) polarization free energy of solvation -37.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds