Wall clock time and date at job start Wed Apr 1 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00164 * 2 1 4 4 H 1.48506 * 109.46984 * 239.99896 * 3 2 1 5 5 H 1.48495 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47494 * 120.00066 * 3 2 1 7 7 C 1.38813 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99926 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00078 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99929 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47038 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.49472 * 55.06527 * 11 10 9 13 13 C 1.53041 * 109.49522 * 175.16399 * 11 10 9 14 14 C 1.53348 * 109.60471 * 181.32735 * 13 11 10 15 15 C 1.53194 * 109.14957 * 298.71016 * 14 13 11 16 16 N 1.46928 * 108.89275 * 54.57965 * 15 14 13 17 17 C 1.34772 * 120.63155 * 126.29960 * 16 15 14 18 18 O 1.21602 * 120.00156 * 176.21816 * 17 16 15 19 19 C 1.47513 * 120.00068 * 356.22019 * 17 16 15 20 20 C 1.40151 * 119.94324 * 49.62638 * 19 17 16 21 21 C 1.36214 * 120.48916 * 179.74530 * 20 19 17 22 22 C 1.40020 * 120.08070 * 0.54447 * 21 20 19 23 23 N 1.35565 * 133.26058 * 179.75943 * 22 21 20 24 24 C 1.30916 * 109.70996 * 179.97438 * 23 22 21 25 25 O 1.35200 * 125.01505 * 179.97438 * 24 23 22 26 26 N 1.36257 * 109.97179 * 359.97438 * 24 23 22 27 27 H 0.97008 * 126.39385 * 180.02562 * 26 24 23 28 28 C 1.38556 * 107.20959 * 0.02562 * 26 24 23 29 29 C 1.38211 * 133.90135 * 180.02562 * 28 26 24 30 30 C 1.46928 * 118.73671 * 306.31757 * 16 15 14 31 31 H 0.97001 * 119.99547 * 0.02562 * 1 2 3 32 32 H 0.96993 * 120.00283 * 359.97438 * 9 7 2 33 33 H 1.08998 * 109.47044 * 60.00258 * 10 9 7 34 34 H 1.09000 * 109.47253 * 300.00208 * 10 9 7 35 35 H 1.09001 * 109.45645 * 301.33636 * 13 11 10 36 36 H 1.08995 * 109.45915 * 61.30774 * 13 11 10 37 37 H 1.08997 * 109.68340 * 178.74965 * 14 13 11 38 38 H 1.08995 * 109.47760 * 58.54506 * 14 13 11 39 39 H 1.09001 * 109.58400 * 294.72335 * 15 14 13 40 40 H 1.09000 * 109.58913 * 174.43873 * 15 14 13 41 41 H 1.07998 * 119.75958 * 359.97438 * 20 19 17 42 42 H 1.07997 * 119.95781 * 180.27892 * 21 20 19 43 43 H 0.96698 * 113.99748 * 270.02117 * 25 24 23 44 44 H 1.07995 * 120.20660 * 359.95437 * 29 28 26 45 45 H 1.08997 * 109.58409 * 173.39500 * 30 16 15 46 46 H 1.08994 * 109.59299 * 293.68155 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8198 0.0012 12 1 0.3797 -4.7140 -0.8409 13 6 1.8242 -6.1422 -0.1204 14 6 0.8280 -7.3076 -0.1534 15 6 0.0303 -7.3239 1.1544 16 7 -0.5873 -6.0054 1.3514 17 6 -1.9132 -5.8933 1.5654 18 8 -2.4020 -4.8038 1.7953 19 6 -2.7716 -7.0921 1.5206 20 6 -2.4141 -8.2359 2.2474 21 6 -3.2011 -9.3473 2.2182 22 6 -4.3716 -9.3584 1.4498 23 7 -5.3272 -10.2935 1.2260 24 6 -6.2358 -9.8113 0.4162 25 8 -7.3278 -10.4832 -0.0128 26 7 -5.9186 -8.5323 0.0695 27 1 -6.4274 -7.9523 -0.5184 28 6 -4.7335 -8.2150 0.7134 29 6 -3.9351 -7.0874 0.7505 30 6 0.2680 -4.8114 1.3103 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6845 -3.7146 0.8905 34 1 2.6846 -3.7146 -0.8894 35 1 2.4106 -6.1406 -1.0393 36 1 2.4897 -6.2583 0.7349 37 1 1.3673 -8.2485 -0.2623 38 1 0.1460 -7.1791 -0.9939 39 1 0.6986 -7.5425 1.9873 40 1 -0.7464 -8.0867 1.0991 41 1 -1.5098 -8.2350 2.8378 42 1 -2.9198 -10.2224 2.7851 43 1 -7.1877 -10.9802 -0.8303 44 1 -4.2098 -6.2083 0.1866 45 1 -0.3521 -3.9161 1.3554 46 1 0.9539 -4.8239 2.1573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491174399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:45 Heat of formation + Delta-G solvation = -12.225050 kcal Electronic energy + Delta-G solvation = -29545.015299 eV Core-core repulsion = 25434.835447 eV Total energy + Delta-G solvation = -4110.179852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.29885 -41.46377 -39.28034 -38.71283 -37.39932 -36.56287 -34.44636 -34.36949 -33.05584 -31.63229 -31.28077 -30.27840 -27.24035 -26.71879 -24.91184 -24.34234 -23.88066 -22.76677 -22.61515 -21.60015 -20.39532 -20.10965 -19.23098 -18.88033 -18.45567 -17.42532 -17.33378 -16.71631 -16.63654 -16.42724 -15.87563 -15.58506 -15.38755 -15.23925 -15.14661 -15.06398 -14.94306 -14.44226 -14.15029 -14.00488 -13.88090 -13.67935 -13.07210 -13.02031 -12.94344 -12.76236 -12.74442 -12.47228 -12.19155 -12.02450 -11.93997 -11.91652 -11.79848 -11.54035 -11.30501 -11.21267 -10.95244 -10.90573 -9.69162 -9.53523 -9.25511 -9.00503 -7.94118 -5.24374 -0.47236 0.27373 1.21714 1.29773 1.45316 1.49665 1.55805 1.74472 1.97525 2.55930 2.66377 2.68675 3.34788 3.38762 3.47940 3.73679 3.91529 3.92801 3.95718 4.08162 4.11440 4.13925 4.20611 4.22822 4.34813 4.47739 4.54109 4.66078 4.79231 4.83540 4.88187 4.93893 4.95476 5.05641 5.07714 5.16821 5.23884 5.25964 5.28158 5.37370 5.48146 5.50894 5.54608 5.61308 5.84760 6.26475 6.37496 6.57125 6.63017 7.07162 7.31989 8.09149 8.30854 9.29258 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.002291 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.524581 B =12219.379042 C =13194.765857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.978 3.022 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.276 1.276 7 C -0.245 4.245 8 H 0.080 0.920 9 N -0.749 5.749 10 C 0.157 3.843 11 C -0.094 4.094 12 H 0.050 0.950 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.088 3.912 16 N -0.596 5.596 17 C 0.552 3.448 18 O -0.586 6.586 19 C -0.113 4.113 20 C -0.085 4.085 21 C -0.062 4.062 22 C 0.064 3.936 23 N -0.519 5.519 24 C 0.472 3.528 25 O -0.442 6.442 26 N -0.587 5.587 27 H 0.439 0.561 28 C 0.040 3.960 29 C -0.059 4.059 30 C 0.128 3.872 31 H 0.250 0.750 32 H 0.370 0.630 33 H 0.029 0.971 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.437 0.563 44 H 0.125 0.875 45 H 0.050 0.950 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 -29.410 -0.720 30.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.806 3.194 4 H -0.201 1.201 5 H -0.224 1.224 6 H -0.201 1.201 7 C -0.377 4.377 8 H 0.098 0.902 9 N -0.391 5.391 10 C 0.031 3.969 11 C -0.113 4.113 12 H 0.068 0.932 13 C -0.144 4.144 14 C -0.165 4.165 15 C -0.033 4.033 16 N -0.327 5.327 17 C 0.342 3.658 18 O -0.467 6.467 19 C -0.118 4.118 20 C -0.106 4.106 21 C -0.082 4.082 22 C -0.055 4.055 23 N -0.252 5.252 24 C 0.167 3.833 25 O -0.247 6.247 26 N -0.212 5.212 27 H 0.281 0.719 28 C -0.069 4.069 29 C -0.081 4.081 30 C 0.005 3.995 31 H 0.058 0.942 32 H 0.202 0.798 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.183 0.817 42 H 0.183 0.817 43 H 0.301 0.699 44 H 0.143 0.857 45 H 0.068 0.932 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.220 -29.443 0.193 30.316 hybrid contribution -0.629 2.616 -1.302 2.989 sum -7.849 -26.827 -1.109 27.974 Atomic orbital electron populations 1.69863 1.06889 1.26074 1.59538 1.25672 0.96362 1.01487 1.03803 0.85152 0.77088 0.78812 0.78352 1.20072 1.22439 1.20149 1.19647 0.91600 0.85318 1.41143 0.90205 1.42682 1.05537 1.01509 1.89420 1.20860 0.93630 0.84194 0.98240 1.21537 0.96999 0.96384 0.96416 0.93169 1.21570 0.97764 0.91582 1.03503 1.21970 0.97970 0.99671 0.96908 1.22498 0.98766 0.82740 0.99287 1.48150 1.06095 1.09143 1.69314 1.18727 0.82489 0.88425 0.76209 1.90856 1.74773 1.30330 1.50760 1.19398 0.95872 0.94352 1.02202 1.20953 1.00851 0.90076 0.98708 1.20181 0.90663 0.99709 0.97621 1.19323 0.96647 0.89507 1.00056 1.70635 1.03818 1.30536 1.20177 1.20444 0.88022 0.81495 0.93341 1.84794 1.26622 1.64589 1.48740 1.43387 1.20569 1.14947 1.42315 0.71893 1.18340 0.89638 0.97547 1.01374 1.19822 0.92660 0.95812 0.99791 1.21436 0.92833 0.87292 0.97959 0.94159 0.79819 0.95338 0.95496 0.90738 0.90007 0.86938 0.92717 0.88307 0.86983 0.81734 0.81744 0.69914 0.85701 0.93167 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.22 13.06 21.65 0.28 -62.93 16 2 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 3 Si 0.98 47.77 29.55 68.60 2.03 49.80 16 4 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 7 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -39.93 5.38 -343.43 -1.85 -41.77 16 10 C 0.16 6.29 5.65 86.38 0.49 6.77 16 11 C -0.09 -3.01 2.38 -10.71 -0.03 -3.03 16 12 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 13 C -0.11 -2.21 5.17 30.72 0.16 -2.06 16 14 C -0.13 -1.99 6.11 30.78 0.19 -1.80 16 15 C 0.09 1.41 5.30 86.36 0.46 1.87 16 16 N -0.60 -16.32 2.97 -822.67 -2.45 -18.77 16 17 C 0.55 17.74 7.22 86.69 0.63 18.36 16 18 O -0.59 -25.80 16.46 -4.04 -0.07 -25.87 16 19 C -0.11 -2.71 5.05 -20.06 -0.10 -2.81 16 20 C -0.09 -1.41 7.25 22.26 0.16 -1.24 16 21 C -0.06 -0.99 10.03 22.23 0.22 -0.76 16 22 C 0.06 1.30 7.22 39.61 0.29 1.59 16 23 N -0.52 -10.70 11.29 -306.25 -3.46 -14.15 16 24 C 0.47 7.35 9.39 179.75 1.69 9.03 16 25 O -0.44 -4.02 13.62 -84.81 -1.16 -5.18 16 26 N -0.59 -8.55 6.27 -302.69 -1.90 -10.45 16 27 H 0.44 3.81 8.96 -92.70 -0.83 2.98 16 28 C 0.04 0.81 7.29 38.68 0.28 1.09 16 29 C -0.06 -1.38 9.74 22.58 0.22 -1.16 16 30 C 0.13 4.37 5.51 86.36 0.48 4.84 16 31 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 32 H 0.37 21.70 6.89 -92.71 -0.64 21.06 16 33 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.12 16 40 H 0.11 1.43 4.47 -2.39 -0.01 1.42 16 41 H 0.17 1.84 6.95 -2.91 -0.02 1.82 16 42 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.44 -1.08 9.06 -74.06 -0.67 -1.75 16 44 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.05 2.28 6.23 -2.39 -0.01 2.27 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -87.24 376.81 -3.21 -90.45 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -1.08 Total: 25.95 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 6.43 Total: 12.92 kcal Atomic # 7 Polarization: -138.71 SS G_CDS: -9.37 Total: -148.08 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.22 Total: -31.04 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -87.24 -3.21 -90.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491174399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.225 kcal (2) G-P(sol) polarization free energy of solvation -87.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds