Wall clock time and date at job start Wed Apr 1 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00277 * 2 1 4 4 H 1.48498 * 109.47109 * 90.00237 * 3 2 1 5 5 H 1.48498 * 109.47255 * 330.00429 * 3 2 1 6 6 H 1.48502 * 109.47497 * 210.00205 * 3 2 1 7 7 C 1.38816 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99846 * 155.36232 * 7 2 1 9 9 N 1.36938 * 119.99747 * 335.34863 * 7 2 1 10 10 C 1.47421 * 125.65147 * 334.85870 * 9 7 2 11 11 C 1.54907 * 104.83379 * 204.08841 * 10 9 7 12 12 C 1.55155 * 101.58227 * 322.98918 * 11 10 9 13 13 C 1.47023 * 125.64312 * 154.54856 * 9 7 2 14 14 H 1.08997 * 109.88153 * 59.56675 * 13 9 7 15 15 C 1.52999 * 109.88367 * 298.39564 * 13 9 7 16 16 N 1.46503 * 109.47027 * 59.65951 * 15 13 9 17 17 C 1.34769 * 119.99906 * 185.93850 * 16 15 13 18 18 O 1.21282 * 120.00527 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99754 * 180.02562 * 17 16 15 20 20 N 1.46502 * 109.46945 * 179.97438 * 19 17 16 21 21 C 1.36385 * 126.36735 * 269.68532 * 20 19 17 22 22 O 1.35283 * 125.03032 * 0.02562 * 21 20 19 23 23 N 1.30747 * 109.93932 * 179.87705 * 21 20 19 24 24 C 1.35911 * 109.62440 * 0.39536 * 23 21 20 25 25 C 1.39703 * 133.44859 * 179.71938 * 24 23 21 26 26 C 1.37663 * 119.77662 * 180.02562 * 25 24 23 27 27 C 1.38724 * 120.49998 * 359.97333 * 26 25 24 28 28 C 1.37924 * 120.43582 * 0.02562 * 27 26 25 29 29 C 1.38449 * 126.36983 * 89.99917 * 20 19 17 30 30 H 0.97001 * 120.00201 * 174.04696 * 1 2 3 31 31 H 1.08996 * 110.36699 * 322.93392 * 10 9 7 32 32 H 1.09002 * 110.36323 * 85.24707 * 10 9 7 33 33 H 1.08992 * 111.00256 * 81.06500 * 11 10 9 34 34 H 1.09001 * 111.00612 * 204.91861 * 11 10 9 35 35 H 1.09005 * 110.71940 * 153.86205 * 12 11 10 36 36 H 1.08991 * 110.72210 * 276.96317 * 12 11 10 37 37 H 1.08997 * 109.46894 * 179.66029 * 15 13 9 38 38 H 1.09001 * 109.47219 * 299.65798 * 15 13 9 39 39 H 0.97000 * 119.99856 * 5.93724 * 16 15 13 40 40 H 1.08991 * 109.47423 * 299.99647 * 19 17 16 41 41 H 1.09004 * 109.47233 * 60.00120 * 19 17 16 42 42 H 0.96705 * 114.00392 * 89.99650 * 22 21 20 43 43 H 1.07998 * 120.10916 * 0.02562 * 25 24 23 44 44 H 1.08002 * 119.74875 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.77751 * 180.02562 * 27 26 25 46 46 H 1.08003 * 120.07426 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6527 -0.6999 6 1 3.5478 1.4402 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0165 -1.2446 -0.3905 9 7 1.4190 -2.3343 0.4936 10 6 0.3356 -2.3718 1.4927 11 6 0.4530 -3.7683 2.1527 12 6 0.8557 -4.6519 0.9426 13 6 1.7554 -3.7134 0.1108 14 1 2.8033 -3.9146 0.3329 15 6 1.4878 -3.9192 -1.3814 16 7 2.3038 -2.9823 -2.1577 17 6 2.1462 -2.8980 -3.4935 18 8 1.3291 -3.5981 -4.0531 19 6 2.9861 -1.9346 -4.2920 20 7 2.6277 -2.0330 -5.7091 21 6 3.1956 -2.8619 -6.6313 22 8 4.1948 -3.7377 -6.3771 23 7 2.6292 -2.6871 -7.7967 24 6 1.6692 -1.7300 -7.6986 25 6 0.7829 -1.1607 -8.6163 26 6 -0.0950 -0.1840 -8.2033 27 6 -0.1068 0.2391 -6.8822 28 6 0.7617 -0.3129 -5.9639 29 6 1.6536 -1.2974 -6.3625 30 1 -0.4850 -0.8355 -0.0871 31 1 0.4779 -1.5875 2.2361 32 1 -0.6334 -2.2625 1.0056 33 1 1.2299 -3.7750 2.9171 34 1 -0.5037 -4.0861 2.5673 35 1 1.4115 -5.5292 1.2737 36 1 -0.0241 -4.9475 0.3712 37 1 1.7449 -4.9414 -1.6590 38 1 0.4328 -3.7407 -1.5894 39 1 2.9576 -2.4226 -1.7102 40 1 2.8062 -0.9186 -3.9411 41 1 4.0404 -2.1812 -4.1663 42 1 3.8899 -4.6156 -6.1096 43 1 0.7864 -1.4857 -9.6462 44 1 -0.7802 0.2555 -8.9130 45 1 -0.8007 1.0059 -6.5707 46 1 0.7478 0.0212 -4.9370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493140164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:44 Heat of formation + Delta-G solvation = 7.194364 kcal Electronic energy + Delta-G solvation = -30675.914620 eV Core-core repulsion = 26566.576857 eV Total energy + Delta-G solvation = -4109.337763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.30523 -40.85858 -39.46955 -39.15895 -37.41901 -35.65677 -35.32886 -34.76881 -31.80615 -31.13050 -30.76001 -29.91100 -28.79036 -26.70398 -25.23880 -24.10086 -23.31602 -22.52892 -21.93317 -21.52917 -21.17222 -19.83268 -19.35729 -18.56550 -18.37262 -18.10562 -17.27704 -17.04903 -16.60176 -16.32326 -16.00728 -15.68973 -15.59445 -15.23367 -15.11227 -15.05203 -14.93649 -14.63814 -14.43844 -13.68895 -13.57329 -13.50864 -13.38930 -12.91137 -12.76964 -12.61330 -12.54581 -12.39521 -12.34403 -12.14787 -11.91844 -11.89026 -11.84423 -11.54980 -11.49119 -11.11983 -10.97398 -10.51991 -10.06298 -9.36195 -9.14850 -8.95602 -8.20528 -5.36109 -0.17880 0.44835 1.02459 1.40434 1.54286 1.58966 1.64861 1.80256 2.14111 2.63219 2.64591 2.83765 3.27811 3.30321 3.47880 3.54907 3.64660 3.83326 3.92604 3.96505 4.00642 4.09307 4.16441 4.33711 4.35930 4.38806 4.40791 4.49780 4.57747 4.73362 4.75503 4.80114 4.94813 5.07383 5.07646 5.12409 5.30828 5.31716 5.42447 5.43656 5.46540 5.52248 5.55146 5.72781 5.87016 6.34972 6.40468 6.51648 6.62367 6.92382 7.09905 7.72561 8.37289 9.06224 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011306 B = 0.003684 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.031283 B = 7599.542280 C = 8797.203931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.072 4.072 3 Si 1.103 2.897 4 H -0.293 1.293 5 H -0.304 1.304 6 H -0.257 1.257 7 C -0.322 4.322 8 H 0.072 0.928 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.121 4.121 12 C -0.115 4.115 13 C 0.141 3.859 14 H 0.058 0.942 15 C 0.125 3.875 16 N -0.688 5.688 17 C 0.493 3.507 18 O -0.586 6.586 19 C 0.093 3.907 20 N -0.477 5.477 21 C 0.458 3.542 22 O -0.440 6.440 23 N -0.516 5.516 24 C 0.030 3.970 25 C -0.078 4.078 26 C -0.114 4.114 27 C -0.098 4.098 28 C -0.126 4.126 29 C 0.044 3.956 30 H 0.253 0.747 31 H 0.017 0.983 32 H -0.004 1.004 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.413 0.587 40 H 0.130 0.870 41 H 0.158 0.842 42 H 0.427 0.573 43 H 0.149 0.851 44 H 0.170 0.830 45 H 0.156 0.844 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -5.188 -7.521 10.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.269 4.269 3 Si 0.929 3.071 4 H -0.220 1.220 5 H -0.231 1.231 6 H -0.181 1.181 7 C -0.451 4.451 8 H 0.090 0.910 9 N -0.335 5.335 10 C 0.015 3.985 11 C -0.159 4.159 12 C -0.153 4.153 13 C 0.034 3.966 14 H 0.076 0.924 15 C -0.001 4.001 16 N -0.340 5.340 17 C 0.278 3.722 18 O -0.467 6.467 19 C -0.033 4.033 20 N -0.178 5.178 21 C 0.155 3.845 22 O -0.244 6.244 23 N -0.247 5.247 24 C -0.087 4.087 25 C -0.097 4.097 26 C -0.134 4.134 27 C -0.117 4.117 28 C -0.147 4.147 29 C -0.064 4.064 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.014 0.986 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.253 0.747 40 H 0.148 0.852 41 H 0.175 0.825 42 H 0.288 0.712 43 H 0.167 0.833 44 H 0.187 0.813 45 H 0.173 0.827 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.553 -4.032 -8.575 10.983 hybrid contribution -0.360 -1.332 1.377 1.949 sum 5.193 -5.363 -7.199 10.371 Atomic orbital electron populations 1.70849 1.07990 1.29501 1.50500 1.26912 0.96419 1.04348 0.99268 0.83005 0.74660 0.72626 0.76792 1.22028 1.23126 1.18117 1.19800 0.96588 0.87725 1.40991 0.91041 1.44893 1.42522 1.01233 1.44897 1.21462 0.90580 0.95991 0.90424 1.22701 1.02086 0.93880 0.97279 1.22524 0.99301 0.97620 0.95832 1.21534 0.98505 0.86003 0.90562 0.92422 1.21829 0.93452 0.91793 0.93062 1.45998 1.40553 1.41615 1.05862 1.21073 0.83922 0.83826 0.83424 1.90691 1.38014 1.46599 1.71390 1.21771 1.02195 1.02012 0.77323 1.45230 1.30276 1.33933 1.08409 1.20447 0.89373 0.91003 0.83708 1.84701 1.25602 1.25621 1.88494 1.70606 1.12025 1.20562 1.21551 1.19225 0.98717 0.97809 0.92978 1.20598 0.93800 0.96287 0.99014 1.21312 0.99041 0.96772 0.96283 1.21303 0.97686 0.99714 0.93016 1.20222 0.96711 0.96989 1.00766 1.18913 0.94628 0.99100 0.93714 0.93614 0.96421 0.98603 0.90494 0.89792 0.87893 0.91657 0.91088 0.95759 0.74690 0.85235 0.82458 0.71165 0.83342 0.81302 0.82656 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.81 13.06 21.65 0.28 -54.52 16 2 C -0.07 -3.71 5.18 84.86 0.44 -3.27 16 3 Si 1.10 46.34 29.98 68.60 2.06 48.40 16 4 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.32 -15.18 8.16 84.03 0.69 -14.49 16 8 H 0.07 3.11 6.47 -2.91 -0.02 3.09 16 9 N -0.61 -26.55 2.94 -668.24 -1.96 -28.52 16 10 C 0.14 6.09 5.51 86.85 0.48 6.57 16 11 C -0.12 -3.71 7.09 31.98 0.23 -3.48 16 12 C -0.11 -3.19 6.48 31.79 0.21 -2.99 16 13 C 0.14 4.79 3.37 45.35 0.15 4.94 16 14 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 15 C 0.12 4.39 5.22 86.38 0.45 4.85 16 16 N -0.69 -23.42 4.81 -463.06 -2.23 -25.65 16 17 C 0.49 17.07 7.90 87.66 0.69 17.76 16 18 O -0.59 -24.83 16.42 -3.04 -0.05 -24.88 16 19 C 0.09 2.58 6.57 85.63 0.56 3.14 16 20 N -0.48 -15.22 2.31 -635.78 -1.47 -16.69 16 21 C 0.46 14.38 8.98 179.76 1.61 16.00 16 22 O -0.44 -10.53 13.51 -85.68 -1.16 -11.69 16 23 N -0.52 -17.83 11.31 -306.48 -3.47 -21.29 16 24 C 0.03 0.99 7.22 39.40 0.28 1.28 16 25 C -0.08 -2.02 10.10 22.49 0.23 -1.80 16 26 C -0.11 -2.47 10.01 22.25 0.22 -2.25 16 27 C -0.10 -2.43 10.03 22.31 0.22 -2.21 16 28 C -0.13 -3.96 10.04 22.30 0.22 -3.74 16 29 C 0.04 1.49 6.87 38.74 0.27 1.76 16 30 H 0.25 15.23 6.09 -92.71 -0.56 14.67 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.00 -0.19 6.69 -2.39 -0.02 -0.20 16 33 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.06 1.85 7.84 -2.39 -0.02 1.83 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.02 1.04 8.11 -2.39 -0.02 1.02 16 39 H 0.41 13.50 5.75 -92.71 -0.53 12.97 16 40 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.16 3.18 8.12 -2.39 -0.02 3.16 16 42 H 0.43 6.73 9.06 -74.05 -0.67 6.06 16 43 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 46 H 0.11 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -75.22 381.72 -1.00 -76.22 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.03 Total: 36.57 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: 6.96 Total: 22.06 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -8.84 Total: -146.67 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.21 Total: -36.57 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.06 Total: 48.40 kcal Total: -75.22 -1.00 -76.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493140164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.412 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds