Wall clock time and date at job start Wed Apr 1 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00456 * 2 1 4 4 H 1.48496 * 109.47218 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46751 * 120.00076 * 3 2 1 7 7 C 1.38816 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99572 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00461 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62644 * 0.03195 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.04433 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.53005 * 110.71903 * 153.84569 * 12 11 10 15 15 N 1.46500 * 109.47109 * 174.99655 * 14 12 11 16 16 C 1.34776 * 120.00180 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99388 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00282 * 180.02562 * 16 15 14 19 19 S 1.81399 * 109.47184 * 180.02562 * 18 16 15 20 20 O 1.42100 * 108.57879 * 294.48541 * 19 18 16 21 21 O 1.42097 * 108.57806 * 65.51131 * 19 18 16 22 22 C 1.81401 * 101.92153 * 179.97438 * 19 18 16 23 23 C 1.54263 * 110.03201 * 302.90711 * 22 19 18 24 24 C 1.54966 * 104.16100 * 217.13836 * 23 22 19 25 25 C 1.54890 * 102.77781 * 37.88436 * 24 23 22 26 26 C 1.53871 * 110.02992 * 185.68763 * 22 19 18 27 27 C 1.47017 * 125.65385 * 180.02562 * 9 7 2 28 28 H 0.97005 * 119.99622 * 0.02562 * 1 2 3 29 29 H 1.09008 * 110.34870 * 85.22563 * 10 9 7 30 30 H 1.09001 * 110.40581 * 322.89599 * 10 9 7 31 31 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 32 32 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 33 33 H 1.08995 * 109.47101 * 294.99732 * 14 12 11 34 34 H 1.08998 * 109.46846 * 54.99796 * 14 12 11 35 35 H 0.96999 * 120.00061 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.46719 * 299.99812 * 18 16 15 37 37 H 1.09000 * 109.46775 * 60.00105 * 18 16 15 38 38 H 1.09001 * 110.01722 * 64.29851 * 22 19 18 39 39 H 1.08999 * 110.48529 * 335.78522 * 23 22 19 40 40 H 1.08998 * 110.48592 * 98.42704 * 23 22 19 41 41 H 1.09003 * 110.71709 * 279.57303 * 24 23 22 42 42 H 1.08999 * 110.76712 * 156.22279 * 24 23 22 43 43 H 1.08997 * 110.48728 * 203.40423 * 25 24 23 44 44 H 1.09000 * 110.48106 * 80.76653 * 25 24 23 45 45 H 1.09002 * 110.03567 * 238.56846 * 26 22 19 46 46 H 1.08997 * 110.03564 * 359.95476 * 26 22 19 47 47 H 1.08998 * 109.88206 * 59.58041 * 27 9 7 48 48 H 1.09004 * 110.01118 * 298.49134 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1422 -2.5327 -0.0007 11 6 -0.4023 -3.9325 0.6096 12 6 0.7781 -4.7524 0.0249 13 1 0.5461 -5.0976 -0.9827 14 6 1.1222 -5.9318 0.9369 15 7 2.1561 -6.7537 0.3031 16 6 2.6193 -7.8542 0.9283 17 8 2.1797 -8.1643 2.0153 18 6 3.6833 -8.6994 0.2766 19 16 4.0911 -10.0977 1.3578 20 8 4.6872 -9.5932 2.5450 21 8 2.9513 -10.9402 1.4577 22 6 5.3629 -10.9591 0.3928 23 6 4.8070 -11.3370 -0.9957 24 6 5.4348 -12.7227 -1.2911 25 6 5.4132 -13.4113 0.0962 26 6 5.7485 -12.2771 1.0868 27 6 1.9315 -3.7276 -0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5277 -2.4852 -1.0192 30 1 -0.6003 -1.7591 0.6155 31 1 -1.3595 -4.3328 0.2753 32 1 -0.3537 -3.8994 1.6980 33 1 1.4905 -5.5572 1.8919 34 1 0.2297 -6.5350 1.1030 35 1 2.5079 -6.5055 -0.5661 36 1 3.3151 -9.0743 -0.6784 37 1 4.5755 -8.0958 0.1105 38 1 6.2419 -10.3239 0.2829 39 1 3.7199 -11.4097 -0.9645 40 1 5.1203 -10.6082 -1.7433 41 1 6.4574 -12.6136 -1.6523 42 1 4.8281 -13.2771 -2.0071 43 1 6.1684 -14.1957 0.1445 44 1 4.4241 -13.8193 0.3041 45 1 6.8148 -12.2821 1.3129 46 1 5.1721 -12.3988 2.0038 47 1 2.5571 -3.8514 0.8834 48 1 2.5304 -3.8660 -0.9007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493211125.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:35 Heat of formation + Delta-G solvation = -90.879412 kcal Electronic energy + Delta-G solvation = -28123.654688 eV Core-core repulsion = 24113.215327 eV Total energy + Delta-G solvation = -4010.439361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -39.95598 -38.55153 -37.74662 -37.16956 -36.21058 -34.85875 -32.68648 -31.28343 -29.82202 -29.59755 -29.20936 -28.07639 -25.51604 -23.58559 -21.76471 -21.45065 -20.94875 -20.07183 -19.73809 -19.00081 -17.93609 -17.38521 -16.87178 -16.68598 -16.43944 -16.11468 -15.71846 -15.29672 -14.86631 -14.80635 -14.61483 -14.04761 -13.87574 -13.62299 -13.42636 -13.24744 -12.64062 -12.55469 -12.39284 -12.25869 -12.19303 -11.84954 -11.78606 -11.77998 -11.71648 -11.65722 -11.55863 -11.35464 -11.18318 -10.99569 -10.81954 -10.62316 -10.59343 -10.31233 -10.14898 -10.04830 -9.83318 -9.56304 -9.17331 -8.68026 -6.87487 -5.68611 -3.10607 -0.44656 2.27308 2.38259 2.78597 3.38238 3.41788 3.42535 3.43910 3.51813 3.81801 3.93841 4.21767 4.28388 4.45873 4.46531 4.60181 4.71148 4.73887 4.77160 4.93759 5.02436 5.08474 5.09612 5.18186 5.28399 5.33842 5.41221 5.48595 5.49343 5.51160 5.64191 5.75735 5.82008 5.98855 6.03567 6.23927 6.30290 6.49140 6.54187 6.64689 6.84418 7.21873 7.47225 7.58677 7.82222 7.88936 8.33011 9.18591 9.79527 10.44050 11.35276 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.001961 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.961905 B =14271.662674 C =14621.420762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.225 4.225 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.077 0.923 14 C 0.127 3.873 15 N -0.710 5.710 16 C 0.538 3.462 17 O -0.533 6.533 18 C -0.662 4.662 19 S 2.451 3.549 20 O -0.920 6.920 21 O -0.916 6.916 22 C -0.585 4.585 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.127 4.127 26 C -0.099 4.099 27 C 0.140 3.860 28 H 0.253 0.747 29 H 0.012 0.988 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.405 0.595 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.025 0.975 48 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.508 -26.140 -5.005 28.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.207 4.207 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.096 0.904 14 C 0.004 3.996 15 N -0.361 5.361 16 C 0.322 3.678 17 O -0.410 6.410 18 C -0.789 4.789 19 S 2.628 3.372 20 O -0.917 6.917 21 O -0.913 6.913 22 C -0.694 4.694 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.165 4.165 26 C -0.138 4.138 27 C 0.014 3.986 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.240 0.760 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.777 -26.268 -3.402 28.234 hybrid contribution 1.157 1.368 -1.451 2.306 sum 10.935 -24.900 -4.853 27.625 Atomic orbital electron populations 1.69784 1.04892 1.24950 1.57415 1.24803 0.95759 0.97776 1.02344 0.86136 0.78397 0.82967 0.77881 1.21243 1.21532 1.21124 1.19021 0.90450 0.82484 1.43362 0.90601 1.44500 1.01988 0.99672 1.86874 1.21952 0.84634 0.92486 0.98227 1.23018 0.95453 0.98550 1.00448 1.22459 0.98494 0.93890 0.98585 0.90442 1.21634 0.90020 0.91118 0.96830 1.45942 1.41344 1.25682 1.23114 1.19072 0.81917 0.81584 0.85272 1.90869 1.59220 1.70773 1.20183 1.30885 1.08873 1.20159 1.19027 1.07666 0.76721 0.76279 0.76561 1.93592 1.78045 1.79498 1.40554 1.93577 1.47875 1.64805 1.85036 1.30996 1.17733 1.10608 1.10086 1.22334 1.00913 0.99372 0.92562 1.22457 1.01233 0.94562 0.97304 1.22429 1.02740 0.97228 0.94125 1.21851 1.03083 0.90679 0.98149 1.21343 0.93431 0.86067 0.97736 0.93628 0.96970 0.87460 0.92014 0.91708 0.90612 0.91021 0.76007 0.82263 0.82142 0.84038 0.89928 0.89491 0.90857 0.90578 0.90668 0.90472 0.89486 0.91094 0.95758 0.96464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.66 10.09 55.49 0.56 -26.10 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 3 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -15.22 3.40 -170.04 -0.58 -15.79 16 10 C 0.15 3.60 5.89 -2.50 -0.01 3.59 16 11 C -0.14 -2.46 6.53 -24.58 -0.16 -2.62 16 12 C -0.11 -1.84 2.97 -88.79 -0.26 -2.11 16 13 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 14 C 0.13 1.84 5.02 -4.04 -0.02 1.82 16 15 N -0.71 -8.61 5.47 -60.29 -0.33 -8.94 16 16 C 0.54 7.13 7.85 -10.99 -0.09 7.04 16 17 O -0.53 -9.52 15.62 2.56 0.04 -9.48 16 18 C -0.66 -5.15 5.94 36.00 0.21 -4.94 16 19 S 2.45 25.29 3.12 -107.50 -0.34 24.95 16 20 O -0.92 -13.35 17.95 -59.53 -1.07 -14.42 16 21 O -0.92 -12.55 17.57 -59.52 -1.05 -13.60 16 22 C -0.59 -3.33 3.38 -25.62 -0.09 -3.42 16 23 C -0.11 -0.49 5.49 -25.03 -0.14 -0.62 16 24 C -0.12 -0.49 6.91 -24.70 -0.17 -0.66 16 25 C -0.13 -0.66 6.83 -25.07 -0.17 -0.83 16 26 C -0.10 -0.61 6.48 -25.61 -0.17 -0.78 16 27 C 0.14 2.78 6.75 -3.07 -0.02 2.76 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 30 H 0.11 2.89 5.88 -51.93 -0.31 2.59 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.41 3.73 8.47 -40.82 -0.35 3.39 16 36 H 0.16 0.61 7.62 -51.92 -0.40 0.21 16 37 H 0.16 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.36 7.49 -51.93 -0.39 -0.03 16 40 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.51 7.59 -51.93 -0.39 0.11 16 47 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -38.55 392.57 -11.30 -49.85 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -8.10 Total: -1.75 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.33 Total: -7.55 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.35 Total: -50.83 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -2.07 Total: -37.49 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 25.29 SS G_CDS: -0.34 Total: 24.95 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -38.55 -11.30 -49.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493211125.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.029 kcal (2) G-P(sol) polarization free energy of solvation -38.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds