Wall clock time and date at job start Wed Apr 1 2020 03:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00456 * 2 1 4 4 H 1.48496 * 109.47218 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.46785 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46751 * 120.00076 * 3 2 1 7 7 C 1.38816 * 119.99418 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99572 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00461 * 359.97438 * 7 2 1 10 10 C 1.47471 * 125.62644 * 0.03195 * 9 7 2 11 11 C 1.54906 * 104.81210 * 204.04433 * 10 9 7 12 12 C 1.55156 * 101.61451 * 323.04512 * 11 10 9 13 13 H 1.09005 * 110.72052 * 277.11432 * 12 11 10 14 14 C 1.53005 * 110.71903 * 153.84569 * 12 11 10 15 15 N 1.46500 * 109.47109 * 174.99655 * 14 12 11 16 16 C 1.34776 * 120.00180 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99388 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00282 * 180.02562 * 16 15 14 19 19 S 1.81399 * 109.47184 * 180.02562 * 18 16 15 20 20 O 1.42100 * 108.57879 * 294.48541 * 19 18 16 21 21 O 1.42097 * 108.57806 * 65.51131 * 19 18 16 22 22 C 1.81401 * 101.92153 * 179.97438 * 19 18 16 23 23 C 1.54263 * 110.03201 * 302.90711 * 22 19 18 24 24 C 1.54966 * 104.16100 * 217.13836 * 23 22 19 25 25 C 1.54890 * 102.77781 * 37.88436 * 24 23 22 26 26 C 1.53871 * 110.02992 * 185.68763 * 22 19 18 27 27 C 1.47017 * 125.65385 * 180.02562 * 9 7 2 28 28 H 0.97005 * 119.99622 * 0.02562 * 1 2 3 29 29 H 1.09008 * 110.34870 * 85.22563 * 10 9 7 30 30 H 1.09001 * 110.40581 * 322.89599 * 10 9 7 31 31 H 1.09002 * 111.00655 * 204.94912 * 11 10 9 32 32 H 1.09002 * 111.00329 * 81.13838 * 11 10 9 33 33 H 1.08995 * 109.47101 * 294.99732 * 14 12 11 34 34 H 1.08998 * 109.46846 * 54.99796 * 14 12 11 35 35 H 0.96999 * 120.00061 * 0.02562 * 15 14 12 36 36 H 1.09002 * 109.46719 * 299.99812 * 18 16 15 37 37 H 1.09000 * 109.46775 * 60.00105 * 18 16 15 38 38 H 1.09001 * 110.01722 * 64.29851 * 22 19 18 39 39 H 1.08999 * 110.48529 * 335.78522 * 23 22 19 40 40 H 1.08998 * 110.48592 * 98.42704 * 23 22 19 41 41 H 1.09003 * 110.71709 * 279.57303 * 24 23 22 42 42 H 1.08999 * 110.76712 * 156.22279 * 24 23 22 43 43 H 1.08997 * 110.48728 * 203.40423 * 25 24 23 44 44 H 1.09000 * 110.48106 * 80.76653 * 25 24 23 45 45 H 1.09002 * 110.03567 * 238.56846 * 26 22 19 46 46 H 1.08997 * 110.03564 * 359.95476 * 26 22 19 47 47 H 1.08998 * 109.88206 * 59.58041 * 27 9 7 48 48 H 1.09004 * 110.01118 * 298.49134 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2126 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1422 -2.5327 -0.0007 11 6 -0.4023 -3.9325 0.6096 12 6 0.7781 -4.7524 0.0249 13 1 0.5461 -5.0976 -0.9827 14 6 1.1222 -5.9318 0.9369 15 7 2.1561 -6.7537 0.3031 16 6 2.6193 -7.8542 0.9283 17 8 2.1797 -8.1643 2.0153 18 6 3.6833 -8.6994 0.2766 19 16 4.0911 -10.0977 1.3578 20 8 4.6872 -9.5932 2.5450 21 8 2.9513 -10.9402 1.4577 22 6 5.3629 -10.9591 0.3928 23 6 4.8070 -11.3370 -0.9957 24 6 5.4348 -12.7227 -1.2911 25 6 5.4132 -13.4113 0.0962 26 6 5.7485 -12.2771 1.0868 27 6 1.9315 -3.7276 -0.0005 28 1 -0.4850 0.8401 -0.0004 29 1 -0.5277 -2.4852 -1.0192 30 1 -0.6003 -1.7591 0.6155 31 1 -1.3595 -4.3328 0.2753 32 1 -0.3537 -3.8994 1.6980 33 1 1.4905 -5.5572 1.8919 34 1 0.2297 -6.5350 1.1030 35 1 2.5079 -6.5055 -0.5661 36 1 3.3151 -9.0743 -0.6784 37 1 4.5755 -8.0958 0.1105 38 1 6.2419 -10.3239 0.2829 39 1 3.7199 -11.4097 -0.9645 40 1 5.1203 -10.6082 -1.7433 41 1 6.4574 -12.6136 -1.6523 42 1 4.8281 -13.2771 -2.0071 43 1 6.1684 -14.1957 0.1445 44 1 4.4241 -13.8193 0.3041 45 1 6.8148 -12.2821 1.3129 46 1 5.1721 -12.3988 2.0038 47 1 2.5571 -3.8514 0.8834 48 1 2.5304 -3.8660 -0.9007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493211125.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:32 Heat of formation + Delta-G solvation = -120.727427 kcal Electronic energy + Delta-G solvation = -28124.948995 eV Core-core repulsion = 24113.215327 eV Total energy + Delta-G solvation = -4011.733668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -41.04558 -39.31387 -38.94775 -38.01251 -37.06775 -36.21120 -34.41370 -32.34125 -31.28000 -30.10769 -29.85744 -29.38486 -27.23547 -25.17217 -22.54524 -22.12730 -21.78715 -21.53879 -21.07820 -19.72581 -18.97359 -18.58832 -18.19711 -17.54879 -17.27071 -16.97472 -16.70961 -16.56355 -16.14866 -15.96193 -15.57407 -15.31507 -14.77722 -14.59608 -14.39740 -14.27578 -13.73410 -13.68525 -13.54742 -13.39171 -13.17007 -13.13450 -13.07929 -12.84067 -12.80357 -12.65574 -12.17926 -12.13544 -12.06004 -12.03916 -11.97637 -11.90396 -11.83621 -11.62416 -11.49166 -11.47800 -11.27259 -11.09779 -10.73344 -10.27352 -8.88018 -7.77506 -5.21587 -1.14955 1.30857 1.46335 1.49475 1.55799 1.71860 1.88552 2.49565 2.76174 2.93918 3.31938 3.32956 3.43871 3.48307 3.62175 3.77741 3.89534 3.95363 3.96776 4.05315 4.23915 4.24814 4.36843 4.43036 4.43526 4.53749 4.62523 4.67866 4.75472 4.77620 4.80220 4.89787 4.98642 5.02695 5.08921 5.11756 5.18797 5.23492 5.23818 5.38407 5.45076 5.47482 5.65824 5.82881 6.26192 6.32126 6.97076 7.11023 7.79261 8.42468 9.24164 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023805 B = 0.001961 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.961905 B =14271.662674 C =14621.420762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.276 1.276 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.125 4.125 12 C -0.092 4.092 13 H 0.104 0.896 14 C 0.135 3.865 15 N -0.699 5.699 16 C 0.526 3.474 17 O -0.589 6.589 18 C -0.646 4.646 19 S 2.422 3.578 20 O -0.982 6.982 21 O -0.970 6.970 22 C -0.548 4.548 23 C -0.122 4.122 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.116 4.116 27 C 0.135 3.865 28 H 0.247 0.753 29 H -0.007 1.007 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.423 0.577 36 H 0.208 0.792 37 H 0.206 0.794 38 H 0.180 0.820 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.049 0.951 47 H 0.019 0.981 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.858 -27.308 -7.968 31.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.369 4.369 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.164 4.164 12 C -0.111 4.111 13 H 0.122 0.878 14 C 0.011 3.989 15 N -0.350 5.350 16 C 0.312 3.688 17 O -0.470 6.470 18 C -0.775 4.775 19 S 2.608 3.392 20 O -0.979 6.979 21 O -0.967 6.967 22 C -0.662 4.662 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.171 4.171 26 C -0.155 4.155 27 C 0.010 3.990 28 H 0.056 0.944 29 H 0.011 0.989 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.261 0.739 36 H 0.225 0.775 37 H 0.223 0.777 38 H 0.198 0.802 39 H 0.098 0.902 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.068 0.932 47 H 0.037 0.963 48 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.128 -27.458 -6.353 30.682 hybrid contribution 0.478 1.669 -0.572 1.828 sum 12.606 -25.788 -6.925 29.528 Atomic orbital electron populations 1.70051 1.06182 1.25061 1.58560 1.25653 0.96677 1.01055 1.02830 0.85125 0.77107 0.78759 0.78169 1.20175 1.22049 1.20553 1.19414 0.91011 0.83866 1.42560 0.90160 1.44825 1.02809 1.01021 1.86857 1.21738 0.84110 0.94739 0.96726 1.22865 0.97926 0.95648 0.99956 1.22291 0.95726 0.93042 1.00078 0.87800 1.21351 0.91027 0.90876 0.95650 1.45779 1.40606 1.25043 1.23618 1.19922 0.82398 0.81784 0.84732 1.90860 1.61234 1.72103 1.22832 1.30766 1.08952 1.18341 1.19416 1.08030 0.77065 0.76784 0.77349 1.93516 1.78712 1.80624 1.45010 1.93508 1.50654 1.66106 1.86414 1.30744 1.16182 1.09848 1.09420 1.22593 1.00923 1.00579 0.91969 1.22512 1.02340 0.94250 0.96393 1.22496 1.02390 0.97368 0.94887 1.22066 1.03950 0.91567 0.97872 1.21544 0.94743 0.84621 0.98053 0.94369 0.98884 0.91261 0.89143 0.92202 0.92753 0.90369 0.73908 0.77504 0.77682 0.80210 0.90243 0.85608 0.89278 0.89870 0.89459 0.91905 0.87582 0.93239 0.96296 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.39 10.09 21.65 0.22 -56.17 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.24 -13.29 10.27 84.03 0.86 -12.43 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 9 N -0.63 -31.69 3.40 -691.89 -2.35 -34.04 16 10 C 0.15 7.32 5.89 86.85 0.51 7.83 16 11 C -0.12 -4.41 6.53 31.98 0.21 -4.20 16 12 C -0.09 -2.74 2.97 -9.61 -0.03 -2.77 16 13 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 14 C 0.14 3.67 5.02 86.38 0.43 4.11 16 15 N -0.70 -14.96 5.47 -463.06 -2.53 -17.50 16 16 C 0.53 13.01 7.85 87.66 0.69 13.69 16 17 O -0.59 -21.41 15.62 -0.18 0.00 -21.42 16 18 C -0.65 -7.75 5.94 71.24 0.42 -7.32 16 19 S 2.42 48.51 3.12 -56.49 -0.18 48.33 16 20 O -0.98 -29.67 17.95 -125.75 -2.26 -31.92 16 21 O -0.97 -27.78 17.57 -125.76 -2.21 -29.99 16 22 C -0.55 -4.49 3.38 31.32 0.11 -4.38 16 23 C -0.12 -0.50 5.49 31.69 0.17 -0.32 16 24 C -0.12 -0.53 6.91 31.91 0.22 -0.31 16 25 C -0.13 -1.14 6.83 31.67 0.22 -0.92 16 26 C -0.12 -1.27 6.48 31.32 0.20 -1.06 16 27 C 0.14 5.14 6.75 86.73 0.59 5.72 16 28 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 29 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 30 H 0.07 3.88 5.88 -2.39 -0.01 3.87 16 31 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.06 2.17 8.05 -2.39 -0.02 2.15 16 33 H 0.05 1.73 7.93 -2.39 -0.02 1.72 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.42 5.94 8.47 -92.71 -0.79 5.15 16 36 H 0.21 0.42 7.62 -2.39 -0.02 0.40 16 37 H 0.21 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.18 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.08 0.42 7.49 -2.39 -0.02 0.41 16 40 H 0.13 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 42 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 45 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.05 0.76 7.59 -2.39 -0.02 0.74 16 47 H 0.02 0.75 7.68 -2.39 -0.02 0.73 16 48 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -91.84 392.57 -2.05 -93.88 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.16 Total: 7.23 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 5.07 Total: -5.85 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -4.66 Total: -107.70 kcal Atomic # 8 Polarization: -78.86 SS G_CDS: -4.47 Total: -83.33 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 48.51 SS G_CDS: -0.18 Total: 48.33 kcal Total: -91.84 -2.05 -93.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493211125.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.846 kcal (2) G-P(sol) polarization free energy of solvation -91.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds