Wall clock time and date at job start Wed Apr 1 2020 03:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48500 * 109.47105 * 269.99871 * 3 2 1 5 5 H 1.48501 * 109.47179 * 30.00428 * 3 2 1 6 6 H 1.48502 * 109.47052 * 150.00189 * 3 2 1 7 7 C 1.38814 * 119.99930 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00213 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99867 * 359.97438 * 7 2 1 10 10 C 1.47743 * 125.82120 * 359.91271 * 9 7 2 11 11 C 1.54909 * 104.83995 * 155.82347 * 10 9 7 12 12 C 1.55159 * 101.57990 * 37.09908 * 11 10 9 13 13 H 1.08995 * 110.87585 * 82.93006 * 12 11 10 14 14 C 1.53006 * 110.71889 * 206.13300 * 12 11 10 15 15 N 1.46500 * 109.46719 * 179.97438 * 14 12 11 16 16 C 1.34781 * 119.99697 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99818 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99943 * 180.02562 * 16 15 14 19 19 S 1.81401 * 109.47023 * 179.97438 * 18 16 15 20 20 O 1.42095 * 108.58256 * 294.48553 * 19 18 16 21 21 O 1.42108 * 108.57499 * 65.51318 * 19 18 16 22 22 C 1.81394 * 101.92205 * 179.97438 * 19 18 16 23 23 C 1.54272 * 110.03166 * 302.16691 * 22 19 18 24 24 C 1.54893 * 104.19776 * 217.10232 * 23 22 19 25 25 C 1.54896 * 102.74652 * 37.94464 * 24 23 22 26 26 C 1.53876 * 110.03580 * 185.00262 * 22 19 18 27 27 C 1.47020 * 125.64749 * 180.02562 * 9 7 2 28 28 H 0.96998 * 119.99524 * 359.97438 * 1 2 3 29 29 H 1.09003 * 110.29227 * 37.02208 * 10 9 7 30 30 H 1.09001 * 110.43832 * 274.70471 * 10 9 7 31 31 H 1.08994 * 111.00889 * 279.01887 * 11 10 9 32 32 H 1.09001 * 111.03628 * 155.18095 * 11 10 9 33 33 H 1.08996 * 109.46429 * 299.97004 * 14 12 11 34 34 H 1.08997 * 109.47048 * 59.97457 * 14 12 11 35 35 H 0.97000 * 120.00631 * 359.97438 * 15 14 12 36 36 H 1.08998 * 109.46546 * 299.99292 * 18 16 15 37 37 H 1.08997 * 109.47358 * 59.99762 * 18 16 15 38 38 H 1.09001 * 110.01910 * 63.60645 * 22 19 18 39 39 H 1.08997 * 110.48679 * 335.78493 * 23 22 19 40 40 H 1.09001 * 110.48526 * 98.42618 * 23 22 19 41 41 H 1.08995 * 110.75960 * 279.63362 * 24 23 22 42 42 H 1.09000 * 110.75477 * 156.25474 * 24 23 22 43 43 H 1.09000 * 110.48608 * 203.37853 * 25 24 23 44 44 H 1.09003 * 110.59694 * 80.78786 * 25 24 23 45 45 H 1.08994 * 110.03275 * 238.57035 * 26 22 19 46 46 H 1.09002 * 110.02777 * 359.95059 * 26 22 19 47 47 H 1.09002 * 109.88367 * 61.61048 * 27 9 7 48 48 H 1.09000 * 109.88319 * 300.59666 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1444 -2.5379 0.0018 11 6 -0.4016 -3.9366 -0.6124 12 6 0.7805 -4.7551 -0.0292 13 1 0.5514 -5.1052 0.9772 14 6 1.1275 -5.9317 -0.9437 15 7 2.2453 -6.6840 -0.3686 16 6 2.7257 -7.7699 -1.0062 17 8 2.2323 -8.1244 -2.0559 18 6 3.8751 -8.5442 -0.4143 19 16 4.2866 -9.9390 -1.4986 20 8 3.1906 -10.8433 -1.5088 21 8 4.7744 -9.4260 -2.7308 22 6 5.6656 -10.7114 -0.6086 23 6 6.8046 -9.6900 -0.4099 24 6 8.0979 -10.5252 -0.5801 25 6 7.7244 -11.5049 -1.7203 26 6 6.2505 -11.8653 -1.4417 27 6 1.9316 -3.7276 -0.0005 28 1 -0.4849 0.8401 0.0004 29 1 -0.6042 -1.7636 -0.6122 30 1 -0.5298 -2.4942 1.0205 31 1 -0.3527 -3.9005 -1.7006 32 1 -1.3579 -4.3402 -0.2796 33 1 0.2606 -6.5853 -1.0394 34 1 1.4100 -5.5564 -1.9273 35 1 2.6402 -6.4002 0.4708 36 1 4.7420 -7.8905 -0.3179 37 1 3.5921 -8.9199 0.5689 38 1 5.3244 -11.0838 0.3573 39 1 6.7526 -8.9084 -1.1678 40 1 6.7588 -9.2572 0.5895 41 1 8.3300 -11.0689 0.3356 42 1 8.9324 -9.8892 -0.8753 43 1 8.3499 -12.3966 -1.6773 44 1 7.8213 -11.0185 -2.6909 45 1 6.1938 -12.7976 -0.8799 46 1 5.7051 -11.9617 -2.3806 47 1 2.5285 -3.8644 0.9012 48 1 2.5598 -3.8502 -0.8828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493211126.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:39 Heat of formation + Delta-G solvation = -120.880585 kcal Electronic energy + Delta-G solvation = -28192.168680 eV Core-core repulsion = 24180.428370 eV Total energy + Delta-G solvation = -4011.740309 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -41.04696 -39.30059 -38.95075 -38.00984 -37.06314 -36.20219 -34.40693 -32.33722 -31.28353 -30.10859 -29.85543 -29.37665 -27.25012 -25.17370 -22.56465 -22.13243 -21.78173 -21.50334 -21.08378 -19.71970 -18.97496 -18.58374 -18.21217 -17.45516 -17.32700 -17.04904 -16.69123 -16.45343 -16.22468 -15.97703 -15.57502 -15.30337 -14.78031 -14.60823 -14.39888 -14.27943 -13.73839 -13.67894 -13.55337 -13.38016 -13.15743 -13.12468 -13.07381 -12.84104 -12.79913 -12.67011 -12.18446 -12.14010 -12.04208 -12.02114 -11.99176 -11.90961 -11.82691 -11.62097 -11.49955 -11.46877 -11.27842 -11.09614 -10.74617 -10.27240 -8.87956 -7.77949 -5.21682 -1.14625 1.30905 1.46522 1.48560 1.56786 1.72180 1.88664 2.49460 2.76172 2.94052 3.32213 3.32917 3.43775 3.48418 3.61953 3.78725 3.89350 3.95820 3.96966 4.04154 4.23556 4.25073 4.36614 4.42901 4.43118 4.53817 4.62024 4.68126 4.75289 4.77178 4.79673 4.90012 4.98156 5.02712 5.08561 5.11795 5.18369 5.23203 5.23981 5.37950 5.44504 5.47722 5.65244 5.82431 6.26045 6.31701 6.96755 7.10492 7.78746 8.42620 9.24444 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.002117 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.246011 B =13222.325197 C =14310.258659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.237 4.237 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.103 0.897 14 C 0.135 3.865 15 N -0.699 5.699 16 C 0.526 3.474 17 O -0.588 6.588 18 C -0.646 4.646 19 S 2.422 3.578 20 O -0.978 6.978 21 O -0.973 6.973 22 C -0.547 4.547 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.134 4.134 26 C -0.115 4.115 27 C 0.135 3.865 28 H 0.246 0.754 29 H 0.069 0.931 30 H -0.006 1.006 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.422 0.578 36 H 0.202 0.798 37 H 0.211 0.789 38 H 0.184 0.816 39 H 0.075 0.925 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.108 0.892 46 H 0.049 0.951 47 H 0.036 0.964 48 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.607 -25.205 6.105 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.366 4.366 8 H 0.099 0.901 9 N -0.356 5.356 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.112 4.112 13 H 0.121 0.879 14 C 0.011 3.989 15 N -0.351 5.351 16 C 0.312 3.688 17 O -0.470 6.470 18 C -0.775 4.775 19 S 2.608 3.392 20 O -0.975 6.975 21 O -0.970 6.970 22 C -0.661 4.661 23 C -0.162 4.162 24 C -0.155 4.155 25 C -0.172 4.172 26 C -0.154 4.154 27 C 0.010 3.990 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.012 0.988 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.260 0.740 36 H 0.219 0.781 37 H 0.228 0.772 38 H 0.201 0.799 39 H 0.094 0.906 40 H 0.144 0.856 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.068 0.932 47 H 0.053 0.947 48 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 14.778 -25.447 4.573 29.779 hybrid contribution 0.332 1.608 0.641 1.763 sum 15.109 -23.838 5.213 28.701 Atomic orbital electron populations 1.70052 1.06220 1.24991 1.58677 1.25646 0.96656 1.01048 1.02882 0.85057 0.77671 0.79089 0.77385 1.21527 1.22072 1.19266 1.19454 0.91021 0.83804 1.42368 0.90054 1.44895 1.02776 1.01033 1.86858 1.21780 0.84139 0.94747 0.96714 1.22856 0.97928 0.95628 0.99941 1.22299 0.95800 0.93078 1.00034 0.87896 1.21352 0.89166 0.92067 0.96320 1.45781 1.35160 1.27371 1.26771 1.19922 0.83561 0.81348 0.83990 1.90859 1.61915 1.69450 1.24780 1.30769 1.07128 1.19429 1.20183 1.08025 0.76996 0.76737 0.77435 1.93509 1.53553 1.63158 1.87265 1.93518 1.81624 1.80326 1.41519 1.30738 1.13435 1.07914 1.13975 1.22574 0.92323 0.95867 1.05442 1.22498 0.96685 0.97290 0.99033 1.22497 0.94339 1.00809 0.99571 1.22063 0.97387 0.97569 0.98339 1.21535 0.94742 0.84617 0.98094 0.94385 0.91293 0.98817 0.92190 0.89146 0.90316 0.92754 0.73953 0.78100 0.77153 0.79855 0.90639 0.85614 0.89057 0.90160 0.89379 0.92141 0.87314 0.93250 0.94653 0.96172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.42 10.11 21.65 0.22 -56.20 16 2 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 3 Si 0.98 45.30 29.55 68.60 2.03 47.32 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.12 10.28 84.03 0.86 -12.26 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -31.59 3.41 -691.16 -2.35 -33.94 16 10 C 0.15 7.27 5.91 86.79 0.51 7.78 16 11 C -0.12 -4.39 6.53 31.99 0.21 -4.18 16 12 C -0.09 -2.76 3.02 -9.60 -0.03 -2.79 16 13 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 14 C 0.14 3.67 4.99 86.38 0.43 4.10 16 15 N -0.70 -15.14 5.40 -463.05 -2.50 -17.64 16 16 C 0.53 13.08 7.85 87.66 0.69 13.77 16 17 O -0.59 -21.41 15.62 -0.19 0.00 -21.41 16 18 C -0.65 -7.86 5.95 71.24 0.42 -7.44 16 19 S 2.42 48.54 3.12 -56.49 -0.18 48.37 16 20 O -0.98 -28.38 17.95 -125.75 -2.26 -30.64 16 21 O -0.97 -28.99 17.54 -125.76 -2.21 -31.20 16 22 C -0.55 -4.47 3.38 31.32 0.11 -4.37 16 23 C -0.12 -0.64 5.52 31.67 0.17 -0.47 16 24 C -0.12 -0.65 6.91 31.89 0.22 -0.43 16 25 C -0.13 -1.24 6.83 31.67 0.22 -1.02 16 26 C -0.11 -1.25 6.48 31.32 0.20 -1.05 16 27 C 0.14 5.08 6.52 86.73 0.57 5.65 16 28 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.07 3.86 5.88 -2.39 -0.01 3.84 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.06 2.17 8.05 -2.39 -0.02 2.15 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.73 8.06 -2.39 -0.02 1.71 16 35 H 0.42 6.13 8.33 -92.71 -0.77 5.36 16 36 H 0.20 0.78 7.67 -2.39 -0.02 0.76 16 37 H 0.21 0.31 8.14 -2.39 -0.02 0.30 16 38 H 0.18 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.08 0.57 7.49 -2.39 -0.02 0.55 16 40 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.05 0.76 7.60 -2.39 -0.02 0.74 16 47 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.02 0.78 7.76 -2.39 -0.02 0.76 16 Total: -1.00 -91.61 392.50 -2.02 -93.63 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.18 Total: 7.89 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 5.05 Total: -6.18 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -4.64 Total: -107.78 kcal Atomic # 8 Polarization: -78.79 SS G_CDS: -4.47 Total: -83.25 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.18 Total: 48.37 kcal Total: -91.61 -2.02 -93.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493211126.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.248 kcal (2) G-P(sol) polarization free energy of solvation -91.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds