Wall clock time and date at job start Wed Apr 1 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48504 * 109.47126 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47346 * 299.99639 * 3 2 1 6 6 H 1.48504 * 109.47293 * 60.00199 * 3 2 1 7 7 C 1.38815 * 120.00045 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99814 * 194.73781 * 7 2 1 9 9 N 1.36929 * 119.99935 * 14.74769 * 7 2 1 10 10 C 1.46927 * 120.63162 * 29.36131 * 9 7 2 11 11 C 1.53190 * 108.78097 * 126.41641 * 10 9 7 12 12 C 1.53046 * 109.31161 * 54.63056 * 11 10 9 13 13 C 1.53000 * 109.45589 * 178.62058 * 12 11 10 14 14 O 1.42909 * 109.46897 * 185.23093 * 13 12 11 15 15 N 1.46492 * 109.45828 * 58.66216 * 12 11 10 16 16 C 1.34777 * 120.00325 * 62.01763 * 15 12 11 17 17 O 1.21631 * 119.99822 * 4.79222 * 16 15 12 18 18 C 1.47231 * 120.00083 * 184.79025 * 16 15 12 19 19 C 1.38939 * 120.85946 * 359.72566 * 18 16 15 20 20 C 1.39738 * 119.29143 * 179.74919 * 19 18 16 21 21 C 1.35106 * 121.14520 * 0.53809 * 20 19 18 22 22 N 1.36154 * 121.71879 * 359.71693 * 21 20 19 23 23 C 1.37002 * 132.64351 * 179.97438 * 22 21 20 24 24 C 1.34955 * 107.14970 * 180.02562 * 23 22 21 25 25 N 1.33744 * 108.60996 * 0.02562 * 24 23 22 26 26 C 1.31983 * 109.16438 * 359.97438 * 25 24 23 27 27 C 1.53036 * 109.53759 * 298.63933 * 12 11 10 28 28 C 1.46923 * 120.63105 * 209.38174 * 9 7 2 29 29 H 0.96999 * 120.00118 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58707 * 6.62352 * 10 9 7 31 31 H 1.09008 * 109.58401 * 246.19983 * 10 9 7 32 32 H 1.09003 * 109.49576 * 294.68520 * 11 10 9 33 33 H 1.08997 * 109.50192 * 174.58819 * 11 10 9 34 34 H 1.08998 * 109.47279 * 305.22435 * 13 12 11 35 35 H 1.08995 * 109.47410 * 65.23357 * 13 12 11 36 36 H 0.96693 * 113.99864 * 180.02562 * 14 13 12 37 37 H 0.97006 * 119.99723 * 242.02352 * 15 12 11 38 38 H 1.08005 * 120.35516 * 359.97438 * 19 18 16 39 39 H 1.08005 * 119.42791 * 180.25345 * 20 19 18 40 40 H 1.08001 * 119.14257 * 179.73817 * 21 20 19 41 41 H 1.07997 * 126.42511 * 0.02704 * 23 22 21 42 42 H 1.08002 * 125.69661 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.49804 * 181.32201 * 27 12 11 44 44 H 1.09000 * 109.50096 * 301.41124 * 27 12 11 45 45 H 1.09003 * 109.58721 * 353.37104 * 28 9 7 46 46 H 1.09000 * 109.58793 * 113.79980 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0636 -1.2174 0.2385 9 7 1.3594 -2.3686 -0.3008 10 6 0.2018 -2.3678 -1.2056 11 6 0.4510 -3.3819 -2.3263 12 6 0.7677 -4.7475 -1.7120 13 6 0.9833 -5.7709 -2.8287 14 8 1.1583 -7.0692 -2.2576 15 7 -0.3513 -5.1744 -0.8684 16 6 -1.5678 -5.3744 -1.4129 17 8 -1.7174 -5.2855 -2.6167 18 6 -2.7158 -5.7005 -0.5506 19 6 -2.5640 -5.8121 0.8260 20 6 -3.6768 -6.1178 1.6139 21 6 -4.8925 -6.3167 1.0590 22 7 -5.0899 -6.2234 -0.2849 23 6 -6.2001 -6.3774 -1.0728 24 6 -5.8143 -6.1692 -2.3491 25 7 -4.5054 -5.8945 -2.3599 26 6 -4.0467 -5.9217 -1.1226 27 6 2.0365 -4.6447 -0.8626 28 6 1.8052 -3.6448 0.2748 29 1 -0.4850 0.8400 0.0004 30 1 0.0736 -1.3738 -1.6340 31 1 -0.6947 -2.6477 -0.6521 32 1 1.2934 -3.0524 -2.9344 33 1 -0.4395 -3.4612 -2.9499 34 1 0.1152 -5.7780 -3.4877 35 1 1.8716 -5.5029 -3.4006 36 1 1.3007 -7.7695 -2.9090 37 1 -0.2166 -5.3131 0.0822 38 1 -1.5970 -5.6606 1.2826 39 1 -3.5622 -6.2010 2.6846 40 1 -5.7297 -6.5555 1.6982 41 1 -7.1971 -6.6198 -0.7357 42 1 -6.4552 -6.2172 -3.2171 43 1 2.2746 -5.6228 -0.4444 44 1 2.8640 -4.3033 -1.4844 45 1 2.7351 -3.4934 0.8230 46 1 1.0396 -4.0289 0.9488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505389279.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:21 Heat of formation + Delta-G solvation = 20.420264 kcal Electronic energy + Delta-G solvation = -31355.834435 eV Core-core repulsion = 27247.070190 eV Total energy + Delta-G solvation = -4108.764245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.65074 -41.48776 -38.99333 -38.09055 -37.40330 -35.61554 -34.66716 -33.51831 -32.17243 -31.51598 -31.04574 -29.63665 -28.34738 -25.77796 -25.61872 -23.97504 -23.64326 -23.22082 -22.53013 -21.76656 -20.21447 -19.20970 -18.74888 -18.31884 -18.00725 -17.46032 -16.93049 -16.86200 -16.47756 -16.23098 -16.02444 -15.68007 -15.58655 -15.17910 -15.00740 -14.90135 -14.62554 -14.44342 -14.30399 -13.91065 -13.49121 -13.32635 -13.18098 -13.10756 -13.02246 -12.84071 -12.62678 -12.45698 -12.19961 -12.02395 -11.90066 -11.80207 -11.43785 -11.34524 -11.11175 -10.95153 -10.54870 -10.34343 -9.95108 -9.78127 -8.89163 -8.64245 -7.85379 -5.33075 -0.64362 0.32074 1.45895 1.48673 1.54815 1.58343 1.80648 1.98894 2.25058 2.51849 2.70065 3.15087 3.27318 3.33345 3.45501 3.71310 3.72433 3.82283 3.88174 3.97222 4.03117 4.27491 4.38695 4.48892 4.50708 4.52501 4.58718 4.65354 4.72112 4.76659 4.77083 4.94091 4.98360 5.01703 5.05708 5.16809 5.18334 5.32227 5.43207 5.46072 5.63101 5.65122 5.67199 5.74423 6.09945 6.40587 6.66356 6.88630 6.98567 7.15752 7.35470 7.86992 8.39817 9.20604 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011895 B = 0.003685 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.278565 B = 7597.162418 C = 8654.968951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.296 1.296 6 H -0.292 1.292 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.605 5.605 10 C 0.198 3.802 11 C -0.139 4.139 12 C 0.198 3.802 13 C 0.074 3.926 14 O -0.572 6.572 15 N -0.690 5.690 16 C 0.561 3.439 17 O -0.554 6.554 18 C -0.140 4.140 19 C -0.034 4.034 20 C -0.157 4.157 21 C 0.089 3.911 22 N -0.377 5.377 23 C -0.080 4.080 24 C -0.006 4.006 25 N -0.524 5.524 26 C 0.223 3.777 27 C -0.118 4.118 28 C 0.142 3.858 29 H 0.247 0.753 30 H 0.044 0.956 31 H -0.006 1.006 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.390 0.610 37 H 0.404 0.596 38 H 0.163 0.837 39 H 0.203 0.797 40 H 0.217 0.783 41 H 0.233 0.767 42 H 0.201 0.799 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -18.596 4.958 21.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.224 1.224 6 H -0.219 1.219 7 C -0.388 4.388 8 H 0.089 0.911 9 N -0.329 5.329 10 C 0.072 3.928 11 C -0.179 4.179 12 C 0.112 3.888 13 C -0.005 4.005 14 O -0.379 6.379 15 N -0.342 5.342 16 C 0.349 3.651 17 O -0.433 6.433 18 C -0.146 4.146 19 C -0.058 4.058 20 C -0.177 4.177 21 C -0.033 4.033 22 N -0.050 5.050 23 C -0.209 4.209 24 C -0.155 4.155 25 N -0.243 5.243 26 C -0.024 4.024 27 C -0.157 4.157 28 C 0.016 3.984 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.012 0.988 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.239 0.761 37 H 0.241 0.759 38 H 0.181 0.819 39 H 0.220 0.780 40 H 0.234 0.766 41 H 0.250 0.750 42 H 0.217 0.783 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.380 -17.904 3.950 20.159 hybrid contribution -0.217 0.921 0.005 0.946 sum -8.598 -16.983 3.954 19.442 Atomic orbital electron populations 1.70189 1.06795 1.25518 1.55760 1.25822 0.95936 1.01505 1.01274 0.85252 0.78856 0.80090 0.76527 1.18684 1.22366 1.21876 1.19574 0.92285 0.85551 1.41419 0.91074 1.44246 1.34245 1.03129 1.51236 1.20251 0.87845 0.95927 0.88790 1.22336 1.00939 0.95479 0.99186 1.20190 0.86514 0.91492 0.90630 1.22503 0.99951 0.83219 0.94858 1.86369 1.95609 1.17349 1.38576 1.45608 1.08033 1.68334 1.12203 1.17867 0.82899 0.76863 0.87468 1.90734 1.84759 1.52005 1.15779 1.20232 0.89697 1.10158 0.94543 1.22103 1.01861 0.91556 0.90315 1.21199 0.89882 1.03281 1.03375 1.22628 1.01743 0.97769 0.81141 1.43221 1.09598 1.44444 1.07770 1.23378 0.92857 1.14403 0.90260 1.23233 0.91357 1.02441 0.98444 1.70709 1.11975 1.22465 1.19183 1.21664 0.89797 1.04817 0.86171 1.22125 0.95063 1.00384 0.98170 1.21088 0.98033 0.85623 0.93620 0.94416 0.93780 0.98814 0.91744 0.93063 0.93490 0.92097 0.76104 0.75896 0.81934 0.78018 0.76622 0.75032 0.78257 0.88944 0.90778 0.91719 0.95741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.47 11.15 21.65 0.24 -56.23 16 2 C -0.05 -2.81 4.96 84.86 0.42 -2.39 16 3 Si 0.96 45.19 29.58 68.60 2.03 47.22 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 7 C -0.26 -13.99 9.58 84.04 0.81 -13.18 16 8 H 0.07 3.71 7.87 -2.91 -0.02 3.68 16 9 N -0.61 -29.81 2.99 -699.10 -2.09 -31.90 16 10 C 0.20 10.10 5.02 86.36 0.43 10.53 16 11 C -0.14 -6.02 4.70 30.67 0.14 -5.87 16 12 C 0.20 7.00 0.44 3.63 0.00 7.00 16 13 C 0.07 2.34 5.57 71.98 0.40 2.74 16 14 O -0.57 -15.71 12.94 -148.98 -1.93 -17.64 16 15 N -0.69 -23.60 3.83 -426.21 -1.63 -25.23 16 16 C 0.56 21.78 7.18 86.61 0.62 22.41 16 17 O -0.55 -25.53 12.51 -4.13 -0.05 -25.58 16 18 C -0.14 -4.65 6.06 -18.58 -0.11 -4.77 16 19 C -0.03 -0.77 9.63 22.80 0.22 -0.55 16 20 C -0.16 -2.22 9.91 21.91 0.22 -2.01 16 21 C 0.09 1.26 10.88 83.30 0.91 2.17 16 22 N -0.38 -8.84 2.94 -347.21 -1.02 -9.86 16 23 C -0.08 -1.57 11.76 83.13 0.98 -0.59 16 24 C -0.01 -0.17 11.83 83.65 0.99 0.82 16 25 N -0.52 -19.96 10.70 -189.73 -2.03 -21.99 16 26 C 0.22 7.65 7.67 135.76 1.04 8.69 16 27 C -0.12 -3.82 4.88 30.67 0.15 -3.67 16 28 C 0.14 5.42 6.24 86.36 0.54 5.96 16 29 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.04 2.60 6.08 -2.39 -0.01 2.59 16 31 H -0.01 -0.34 7.74 -2.38 -0.02 -0.36 16 32 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.05 2.40 6.52 -2.39 -0.02 2.38 16 34 H 0.05 1.76 6.06 -2.39 -0.01 1.74 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.39 7.29 9.12 -74.06 -0.68 6.61 16 37 H 0.40 11.88 5.32 -92.70 -0.49 11.39 16 38 H 0.16 2.97 6.49 -2.91 -0.02 2.95 16 39 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.22 0.68 8.06 -2.91 -0.02 0.65 16 41 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 42 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 43 H 0.09 2.55 7.79 -2.38 -0.02 2.53 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 46 H 0.02 0.89 6.90 -2.39 -0.02 0.88 16 Total: -1.00 -87.54 367.05 1.15 -86.39 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -0.13 Total: 27.52 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 7.76 Total: 27.29 kcal Atomic # 7 Polarization: -138.68 SS G_CDS: -6.53 Total: -145.21 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.98 Total: -43.21 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -87.54 1.15 -86.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505389279.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.813 kcal (2) G-P(sol) polarization free energy of solvation -87.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds