Wall clock time and date at job start Wed Apr 1 2020 03:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99573 * 2 1 4 4 H 1.48500 * 109.46872 * 239.99841 * 3 2 1 5 5 H 1.48501 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46951 * 119.99619 * 3 2 1 7 7 C 1.38809 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99974 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99798 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46837 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99823 * 270.00237 * 12 11 10 14 14 C 1.53001 * 109.47161 * 264.58020 * 13 12 11 15 15 O 1.42898 * 109.47122 * 64.99886 * 14 13 12 16 16 C 1.34771 * 119.99954 * 90.00168 * 12 11 10 17 17 O 1.21588 * 120.00160 * 5.06034 * 16 12 11 18 18 C 1.47529 * 120.00115 * 185.05662 * 16 12 11 19 19 C 1.39595 * 120.21620 * 61.36442 * 18 16 12 20 20 C 1.37860 * 119.96435 * 180.29645 * 19 18 16 21 21 C 1.38576 * 120.41266 * 359.72951 * 20 19 18 22 22 C 1.37965 * 120.44584 * 359.97045 * 21 20 19 23 23 C 1.39248 * 120.02257 * 0.02808 * 22 21 20 24 24 C 1.48178 * 120.20468 * 180.02562 * 23 22 21 25 25 C 1.40978 * 126.25215 * 130.02184 * 24 23 22 26 26 N 1.30620 * 108.06658 * 180.22617 * 25 24 23 27 27 N 1.40000 * 108.57677 * 359.59112 * 26 25 24 28 28 H 0.96993 * 125.87314 * 180.19615 * 27 26 25 29 29 C 1.34712 * 108.26480 * 0.41706 * 27 26 25 30 30 H 0.96994 * 120.00519 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99765 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46643 * 60.00422 * 10 9 7 33 33 H 1.09000 * 109.46918 * 300.00366 * 10 9 7 34 34 H 1.09003 * 109.46770 * 60.00712 * 11 10 9 35 35 H 1.08994 * 109.47313 * 300.00197 * 11 10 9 36 36 H 1.09000 * 109.47664 * 24.58261 * 13 12 11 37 37 H 1.09001 * 109.47004 * 144.58060 * 13 12 11 38 38 H 1.08997 * 109.47215 * 185.00254 * 14 13 12 39 39 H 1.09000 * 109.47101 * 305.00538 * 14 13 12 40 40 H 0.96701 * 114.00159 * 179.97438 * 15 14 13 41 41 H 1.07998 * 120.01910 * 0.02562 * 19 18 16 42 42 H 1.07997 * 119.79344 * 179.74220 * 20 19 18 43 43 H 1.08000 * 119.77393 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.99220 * 180.02562 * 22 21 20 45 45 H 1.08002 * 125.96828 * 359.97330 * 25 24 23 46 46 H 1.07996 * 126.19748 * 179.75374 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0583 -3.6568 0.0027 11 6 1.0641 -4.8197 0.0031 12 7 1.7967 -6.0884 0.0049 13 6 2.1639 -6.7239 -1.2630 14 6 1.1071 -7.7654 -1.6364 15 8 -0.1382 -7.1112 -1.8881 16 6 2.1327 -6.6708 1.1728 17 8 1.7493 -6.1929 2.2230 18 6 2.9658 -7.8884 1.1771 19 6 4.2574 -7.8578 0.6484 20 6 5.0292 -9.0001 0.6496 21 6 4.5333 -10.1812 1.1783 22 6 3.2615 -10.2291 1.7108 23 6 2.4661 -9.0861 1.7191 24 6 1.0998 -9.1329 2.2905 25 6 0.5593 -8.2350 3.2336 26 7 -0.6652 -8.6084 3.4929 27 7 -0.9572 -9.7431 2.7266 28 1 -1.7989 -10.2251 2.7227 29 6 0.1333 -10.0534 1.9991 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 0.0016 32 1 2.6848 -3.7136 0.8928 33 1 2.6850 -3.7152 -0.8872 34 1 0.4379 -4.7626 -0.8872 35 1 0.4371 -4.7614 0.8927 36 1 2.2209 -5.9674 -2.0456 37 1 3.1331 -7.2114 -1.1577 38 1 1.4242 -8.3000 -2.5317 39 1 0.9869 -8.4716 -0.8149 40 1 -0.8559 -7.7119 -2.1315 41 1 4.6503 -6.9408 0.2347 42 1 6.0265 -8.9743 0.2360 43 1 5.1466 -11.0701 1.1735 44 1 2.8825 -11.1534 2.1213 45 1 1.0701 -7.3889 3.6690 46 1 0.2265 -10.8801 1.3105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569935711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:54 Heat of formation + Delta-G solvation = 43.294112 kcal Electronic energy + Delta-G solvation = -30484.096545 eV Core-core repulsion = 26376.324185 eV Total energy + Delta-G solvation = -4107.772360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40356 -40.18347 -38.41121 -37.12831 -35.53733 -34.24759 -32.76394 -31.88164 -31.40905 -30.93346 -29.40512 -28.76040 -27.30240 -24.39624 -23.51752 -23.18720 -22.75869 -21.71214 -21.35060 -20.35428 -19.25212 -18.22609 -17.80404 -17.13803 -17.09426 -16.13885 -16.01813 -15.73036 -15.06455 -14.70623 -14.57864 -14.52488 -14.31856 -14.06044 -13.69300 -13.64739 -13.49931 -13.42001 -13.09879 -12.80679 -12.76341 -12.60963 -12.29460 -11.96602 -11.54822 -11.41649 -11.12577 -10.86102 -10.82809 -10.80017 -10.54331 -10.18741 -10.07465 -9.80120 -9.70251 -9.57836 -9.50345 -9.09879 -8.78337 -8.42277 -8.25750 -6.83938 -5.67427 -2.96416 0.82159 1.03232 1.79876 2.68822 2.73758 2.83456 3.11976 3.50554 3.54166 3.55703 3.57524 4.13546 4.42653 4.47517 4.64958 4.68738 4.69596 4.77526 4.99093 5.01217 5.07428 5.17327 5.23313 5.24558 5.39134 5.44684 5.57265 5.63229 5.67626 5.74739 5.80350 5.86989 6.01077 6.12940 6.16920 6.21217 6.27737 6.31882 6.56811 6.64081 6.71475 6.85865 7.03349 7.07265 7.48409 7.57436 7.63393 7.77185 8.35054 8.51134 9.61642 10.19257 10.54400 11.55482 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.002994 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.201643 B = 9349.436396 C = 9915.821033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.113 3.887 12 N -0.590 5.590 13 C 0.104 3.896 14 C 0.060 3.940 15 O -0.561 6.561 16 C 0.561 3.439 17 O -0.522 6.522 18 C -0.111 4.111 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.103 4.103 22 C -0.118 4.118 23 C 0.040 3.960 24 C -0.219 4.219 25 C 0.095 3.905 26 N -0.298 5.298 27 N -0.478 5.478 28 H 0.438 0.562 29 C 0.073 3.927 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.020 0.980 33 H 0.016 0.984 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.374 0.626 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.203 0.797 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 -30.451 -2.316 30.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.009 4.009 12 N -0.321 5.321 13 C -0.020 4.020 14 C -0.019 4.019 15 O -0.366 6.366 16 C 0.348 3.652 17 O -0.398 6.398 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.136 4.136 23 C 0.038 3.962 24 C -0.230 4.230 25 C -0.092 4.092 26 N -0.119 5.119 27 N -0.183 5.183 28 H 0.282 0.718 29 C -0.076 4.076 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.220 0.780 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.220 0.780 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.310 -29.246 -0.932 29.576 hybrid contribution 0.255 -0.085 -0.794 0.839 sum 4.565 -29.331 -1.726 29.734 Atomic orbital electron populations 1.69658 1.05087 1.25707 1.57758 1.24742 0.95533 0.97640 1.03090 0.86248 0.78489 0.83529 0.77810 1.21317 1.21689 1.21258 1.19162 0.90943 0.84036 1.42680 0.91299 1.42199 1.05896 0.99742 1.89552 1.20919 0.93932 0.85864 0.97809 1.21705 0.94573 0.80882 1.03762 1.47663 1.56453 1.23168 1.04838 1.21785 0.96669 0.96671 0.86832 1.22661 0.85502 0.94892 0.98809 1.86603 1.20112 1.37770 1.92073 1.18162 0.79851 0.83252 0.83923 1.90708 1.53896 1.64286 1.30927 1.20011 0.95590 0.93925 1.01951 1.21205 0.92740 0.98947 0.97845 1.21087 1.00018 0.92602 1.00723 1.21182 0.95432 0.98077 0.97441 1.21124 0.94130 0.97613 1.00727 1.17931 0.91473 0.91902 0.94884 1.18880 0.95298 1.01274 1.07594 1.24769 0.91044 0.98079 0.95326 1.77351 1.17386 1.00217 1.16992 1.46259 1.13488 1.24430 1.34166 0.71842 1.22522 0.87698 0.99821 0.97571 0.93485 0.78216 0.96169 0.96612 0.89802 0.89899 0.88906 0.88866 0.93025 0.93658 0.77979 0.85135 0.85502 0.85743 0.85658 0.78034 0.80728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.40 13.06 55.49 0.72 -28.68 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 7 C -0.24 -7.00 9.99 -15.06 -0.15 -7.16 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.73 -19.88 5.60 -59.91 -0.34 -20.22 16 10 C 0.14 3.18 6.58 -4.04 -0.03 3.16 16 11 C 0.11 2.14 5.47 -4.04 -0.02 2.12 16 12 N -0.59 -8.98 2.43 -174.92 -0.43 -9.40 16 13 C 0.10 1.19 5.57 -4.04 -0.02 1.17 16 14 C 0.06 0.59 7.35 37.16 0.27 0.86 16 15 O -0.56 -6.54 13.11 -35.23 -0.46 -7.00 16 16 C 0.56 8.86 6.27 -12.48 -0.08 8.78 16 17 O -0.52 -10.10 12.84 5.29 0.07 -10.03 16 18 C -0.11 -1.36 4.66 -104.70 -0.49 -1.85 16 19 C -0.09 -0.88 7.72 -39.21 -0.30 -1.19 16 20 C -0.13 -0.97 10.02 -39.59 -0.40 -1.36 16 21 C -0.10 -0.72 10.02 -39.56 -0.40 -1.12 16 22 C -0.12 -0.95 9.69 -39.31 -0.38 -1.34 16 23 C 0.04 0.44 5.78 -104.53 -0.60 -0.17 16 24 C -0.22 -2.57 5.13 -105.36 -0.54 -3.11 16 25 C 0.10 1.40 10.13 -17.03 -0.17 1.23 16 26 N -0.30 -4.28 12.66 30.82 0.39 -3.89 16 27 N -0.48 -4.63 7.32 30.65 0.22 -4.41 16 28 H 0.44 2.67 8.96 -182.68 -1.64 1.03 16 29 C 0.07 0.64 11.87 -16.87 -0.20 0.43 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.38 10.97 7.67 -40.82 -0.31 10.65 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 1.59 7.64 -51.93 -0.40 1.19 16 35 H 0.08 1.76 7.35 -51.93 -0.38 1.38 16 36 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 37 H 0.09 0.86 5.11 -51.93 -0.27 0.59 16 38 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 0.45 8.00 -51.93 -0.42 0.03 16 40 H 0.37 2.70 9.12 45.56 0.42 3.11 16 41 H 0.13 1.24 7.78 -52.49 -0.41 0.83 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.20 3.33 5.99 -52.49 -0.31 3.02 16 46 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -38.42 388.12 -9.23 -47.65 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.64 Total: 11.96 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -3.61 Total: -0.05 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: 0.58 Total: -66.59 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.39 Total: -17.03 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -38.42 -9.23 -47.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569935711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.948 kcal (2) G-P(sol) polarization free energy of solvation -38.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds