Wall clock time and date at job start Wed Apr 1 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99573 * 2 1 4 4 H 1.48500 * 109.46872 * 239.99841 * 3 2 1 5 5 H 1.48501 * 109.47032 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46951 * 119.99619 * 3 2 1 7 7 C 1.38809 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99974 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99830 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99798 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46837 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.46837 * 180.02562 * 11 10 9 13 13 C 1.46500 * 119.99823 * 270.00237 * 12 11 10 14 14 C 1.53001 * 109.47161 * 264.58020 * 13 12 11 15 15 O 1.42898 * 109.47122 * 64.99886 * 14 13 12 16 16 C 1.34771 * 119.99954 * 90.00168 * 12 11 10 17 17 O 1.21588 * 120.00160 * 5.06034 * 16 12 11 18 18 C 1.47529 * 120.00115 * 185.05662 * 16 12 11 19 19 C 1.39595 * 120.21620 * 61.36442 * 18 16 12 20 20 C 1.37860 * 119.96435 * 180.29645 * 19 18 16 21 21 C 1.38576 * 120.41266 * 359.72951 * 20 19 18 22 22 C 1.37965 * 120.44584 * 359.97045 * 21 20 19 23 23 C 1.39248 * 120.02257 * 0.02808 * 22 21 20 24 24 C 1.48178 * 120.20468 * 180.02562 * 23 22 21 25 25 C 1.40978 * 126.25215 * 130.02184 * 24 23 22 26 26 N 1.30620 * 108.06658 * 180.22617 * 25 24 23 27 27 N 1.40000 * 108.57677 * 359.59112 * 26 25 24 28 28 H 0.96993 * 125.87314 * 180.19615 * 27 26 25 29 29 C 1.34712 * 108.26480 * 0.41706 * 27 26 25 30 30 H 0.96994 * 120.00519 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99765 * 0.02562 * 9 7 2 32 32 H 1.08998 * 109.46643 * 60.00422 * 10 9 7 33 33 H 1.09000 * 109.46918 * 300.00366 * 10 9 7 34 34 H 1.09003 * 109.46770 * 60.00712 * 11 10 9 35 35 H 1.08994 * 109.47313 * 300.00197 * 11 10 9 36 36 H 1.09000 * 109.47664 * 24.58261 * 13 12 11 37 37 H 1.09001 * 109.47004 * 144.58060 * 13 12 11 38 38 H 1.08997 * 109.47215 * 185.00254 * 14 13 12 39 39 H 1.09000 * 109.47101 * 305.00538 * 14 13 12 40 40 H 0.96701 * 114.00159 * 179.97438 * 15 14 13 41 41 H 1.07998 * 120.01910 * 0.02562 * 19 18 16 42 42 H 1.07997 * 119.79344 * 179.74220 * 20 19 18 43 43 H 1.08000 * 119.77393 * 179.97438 * 21 20 19 44 44 H 1.08004 * 119.99220 * 180.02562 * 22 21 20 45 45 H 1.08002 * 125.96828 * 359.97330 * 25 24 23 46 46 H 1.07996 * 126.19748 * 179.75374 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0583 -3.6568 0.0027 11 6 1.0641 -4.8197 0.0031 12 7 1.7967 -6.0884 0.0049 13 6 2.1639 -6.7239 -1.2630 14 6 1.1071 -7.7654 -1.6364 15 8 -0.1382 -7.1112 -1.8881 16 6 2.1327 -6.6708 1.1728 17 8 1.7493 -6.1929 2.2230 18 6 2.9658 -7.8884 1.1771 19 6 4.2574 -7.8578 0.6484 20 6 5.0292 -9.0001 0.6496 21 6 4.5333 -10.1812 1.1783 22 6 3.2615 -10.2291 1.7108 23 6 2.4661 -9.0861 1.7191 24 6 1.0998 -9.1329 2.2905 25 6 0.5593 -8.2350 3.2336 26 7 -0.6652 -8.6084 3.4929 27 7 -0.9572 -9.7431 2.7266 28 1 -1.7989 -10.2251 2.7227 29 6 0.1333 -10.0534 1.9991 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 0.0016 32 1 2.6848 -3.7136 0.8928 33 1 2.6850 -3.7152 -0.8872 34 1 0.4379 -4.7626 -0.8872 35 1 0.4371 -4.7614 0.8927 36 1 2.2209 -5.9674 -2.0456 37 1 3.1331 -7.2114 -1.1577 38 1 1.4242 -8.3000 -2.5317 39 1 0.9869 -8.4716 -0.8149 40 1 -0.8559 -7.7119 -2.1315 41 1 4.6503 -6.9408 0.2347 42 1 6.0265 -8.9743 0.2360 43 1 5.1466 -11.0701 1.1735 44 1 2.8825 -11.1534 2.1213 45 1 1.0701 -7.3889 3.6690 46 1 0.2265 -10.8801 1.3105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569935711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:53 Heat of formation + Delta-G solvation = 13.182834 kcal Electronic energy + Delta-G solvation = -30485.402268 eV Core-core repulsion = 26376.324185 eV Total energy + Delta-G solvation = -4109.078083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.27917 -41.22800 -39.25746 -38.10897 -37.10006 -35.90330 -33.59798 -33.50133 -32.34260 -32.07560 -30.65829 -29.57736 -28.81032 -25.99933 -24.66245 -24.11108 -23.77762 -23.08707 -22.51639 -21.24268 -20.30099 -19.24771 -19.01821 -18.66279 -18.04371 -17.50764 -16.89037 -16.60237 -16.51937 -15.93214 -15.70417 -15.49925 -15.42381 -15.23640 -15.10785 -14.98518 -14.70822 -14.52673 -14.31366 -14.15236 -13.73675 -13.53851 -13.18230 -13.06597 -12.89505 -12.77708 -12.65426 -12.51125 -12.19613 -12.17490 -12.08229 -11.88765 -11.67212 -11.01642 -10.98595 -10.82503 -10.64057 -10.26001 -9.85743 -9.62331 -9.08857 -9.05045 -7.98109 -5.30021 0.09885 0.38420 0.98661 1.44534 1.49848 1.55805 1.62514 1.82042 1.94927 2.04985 2.55266 2.86681 3.34295 3.40716 3.48025 3.68846 4.01596 4.04563 4.06731 4.11940 4.14312 4.26181 4.28618 4.29164 4.34227 4.48727 4.54182 4.55346 4.57845 4.63279 4.69632 4.82935 4.90136 4.97070 5.02169 5.08164 5.15426 5.40545 5.44261 5.50790 5.58699 5.61900 5.67563 6.05656 6.22223 6.41222 6.43066 6.67805 6.92380 7.16047 7.27853 7.99139 8.25242 9.25363 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012552 B = 0.002994 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.201643 B = 9349.436396 C = 9915.821033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.074 4.074 3 Si 0.982 3.018 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.075 0.925 9 N -0.743 5.743 10 C 0.152 3.848 11 C 0.135 3.865 12 N -0.589 5.589 13 C 0.096 3.904 14 C 0.065 3.935 15 O -0.592 6.592 16 C 0.556 3.444 17 O -0.571 6.571 18 C -0.133 4.133 19 C -0.099 4.099 20 C -0.118 4.118 21 C -0.090 4.090 22 C -0.111 4.111 23 C 0.030 3.970 24 C -0.239 4.239 25 C 0.069 3.931 26 N -0.343 5.343 27 N -0.465 5.465 28 H 0.454 0.546 29 C 0.102 3.898 30 H 0.254 0.746 31 H 0.373 0.627 32 H 0.002 0.998 33 H 0.030 0.970 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.046 0.954 40 H 0.392 0.608 41 H 0.127 0.873 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.152 0.848 45 H 0.169 0.831 46 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.366 -33.993 -4.181 35.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.809 3.191 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.386 5.386 10 C 0.025 3.975 11 C 0.011 3.989 12 N -0.320 5.320 13 C -0.026 4.026 14 C -0.014 4.014 15 O -0.400 6.400 16 C 0.346 3.654 17 O -0.451 6.451 18 C -0.136 4.136 19 C -0.117 4.117 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.129 4.129 23 C 0.028 3.972 24 C -0.251 4.251 25 C -0.117 4.117 26 N -0.165 5.165 27 N -0.173 5.173 28 H 0.301 0.699 29 C -0.048 4.048 30 H 0.062 0.938 31 H 0.205 0.795 32 H 0.020 0.980 33 H 0.048 0.952 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.241 0.759 41 H 0.145 0.855 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.169 0.831 45 H 0.186 0.814 46 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.588 -32.848 -2.826 33.621 hybrid contribution -0.429 0.879 -0.208 1.000 sum 6.159 -31.969 -3.034 32.698 Atomic orbital electron populations 1.69835 1.06789 1.26432 1.58936 1.25687 0.96512 1.01409 1.03064 0.85105 0.77184 0.78459 0.78348 1.19718 1.21741 1.20508 1.19587 0.91474 0.85130 1.42266 0.90686 1.42404 1.05602 1.01035 1.89591 1.20937 0.94172 0.85245 0.97185 1.21159 0.93633 0.82110 1.02003 1.47704 1.55875 1.21786 1.06612 1.22123 0.98831 0.97032 0.84571 1.22677 0.84332 0.94014 1.00334 1.86554 1.21498 1.39593 1.92309 1.18905 0.79397 0.84105 0.83026 1.90697 1.55825 1.65894 1.32679 1.19768 0.96171 0.92673 1.04999 1.21263 0.92106 1.00050 0.98301 1.21411 1.00693 0.91769 0.99738 1.21619 0.95028 0.98931 0.95193 1.21404 0.94162 0.97343 0.99969 1.18022 0.91554 0.92446 0.95208 1.19081 0.96830 1.01524 1.07619 1.24455 0.91764 0.98417 0.97101 1.77227 1.17550 1.02597 1.19154 1.46259 1.14642 1.23108 1.33246 0.69932 1.23227 0.85734 0.99562 0.96262 0.93772 0.79488 0.98031 0.95165 0.89791 0.93224 0.89559 0.86285 0.89459 0.93552 0.75924 0.85466 0.82751 0.82160 0.83075 0.81385 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.76 13.06 21.65 0.28 -62.47 16 2 C -0.07 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.98 48.33 29.55 68.60 2.03 50.36 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.25 -15.32 9.99 84.03 0.84 -14.48 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.74 -42.35 5.60 -343.45 -1.92 -44.28 16 10 C 0.15 7.11 6.58 86.38 0.57 7.68 16 11 C 0.13 5.48 5.47 86.38 0.47 5.95 16 12 N -0.59 -18.73 2.43 -825.59 -2.01 -20.73 16 13 C 0.10 2.14 5.57 86.38 0.48 2.62 16 14 C 0.06 1.14 7.35 71.98 0.53 1.67 16 15 O -0.59 -13.34 13.11 -148.98 -1.95 -15.30 16 16 C 0.56 18.62 6.27 86.69 0.54 19.16 16 17 O -0.57 -24.45 12.84 -3.99 -0.05 -24.50 16 18 C -0.13 -3.20 4.66 -19.91 -0.09 -3.29 16 19 C -0.10 -1.80 7.72 22.51 0.17 -1.62 16 20 C -0.12 -1.34 10.02 22.26 0.22 -1.12 16 21 C -0.09 -0.81 10.02 22.29 0.22 -0.59 16 22 C -0.11 -1.35 9.69 22.45 0.22 -1.13 16 23 C 0.03 0.60 5.78 -19.81 -0.11 0.49 16 24 C -0.24 -5.51 5.13 -20.34 -0.10 -5.61 16 25 C 0.07 2.19 10.13 85.54 0.87 3.06 16 26 N -0.34 -10.39 12.66 -56.40 -0.71 -11.10 16 27 N -0.46 -8.53 7.32 -56.94 -0.42 -8.95 16 28 H 0.45 4.80 8.96 -213.39 -1.91 2.88 16 29 C 0.10 1.51 11.87 83.87 1.00 2.51 16 30 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 31 H 0.37 22.53 7.67 -92.71 -0.71 21.82 16 32 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 3.38 7.64 -2.39 -0.02 3.36 16 35 H 0.05 2.33 7.35 -2.39 -0.02 2.31 16 36 H 0.09 2.01 8.03 -2.39 -0.02 1.99 16 37 H 0.12 1.99 5.11 -2.39 -0.01 1.98 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.82 8.00 -2.39 -0.02 0.80 16 40 H 0.39 5.17 9.12 -74.06 -0.68 4.50 16 41 H 0.13 2.30 7.78 -2.91 -0.02 2.28 16 42 H 0.15 0.92 8.06 -2.91 -0.02 0.89 16 43 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 44 H 0.15 1.06 8.06 -2.91 -0.02 1.03 16 45 H 0.17 6.42 5.99 -2.91 -0.02 6.40 16 46 H 0.23 0.79 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -90.15 388.12 -0.72 -90.86 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -2.25 Total: 34.89 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.29 Total: 11.22 kcal Atomic # 7 Polarization: -142.75 SS G_CDS: -4.78 Total: -147.53 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -2.00 Total: -39.80 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -90.15 -0.72 -90.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569935711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.045 kcal (2) G-P(sol) polarization free energy of solvation -90.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds