Wall clock time and date at job start Wed Apr 1 2020 02:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.09007 * 109.46739 * 55.00050 * 12 11 10 14 14 N 1.46895 * 109.47375 * 295.00374 * 12 11 10 15 15 C 1.50703 * 109.47152 * 175.00085 * 12 11 10 16 16 O 1.21276 * 119.99979 * 100.00242 * 15 12 11 17 17 N 1.34779 * 120.00055 * 279.99928 * 15 12 11 18 18 C 1.46495 * 119.99997 * 180.02562 * 17 15 12 19 19 C 1.50699 * 109.47134 * 180.02562 * 18 17 15 20 20 N 1.32418 * 118.52385 * 269.73526 * 19 18 17 21 21 C 1.32398 * 121.51417 * 179.71243 * 20 19 18 22 22 O 1.35285 * 120.88972 * 180.27709 * 21 20 19 23 23 C 1.41423 * 118.21805 * 0.53551 * 21 20 19 24 24 C 1.40010 * 122.11995 * 179.76316 * 23 21 20 25 25 C 1.36344 * 119.49678 * 179.97438 * 24 23 21 26 26 C 1.39243 * 120.90596 * 359.97438 * 25 24 23 27 27 C 1.36298 * 121.04469 * 0.02562 * 26 25 24 28 28 C 1.40169 * 119.58437 * 359.97438 * 27 26 25 29 29 N 1.31153 * 118.52777 * 89.99904 * 19 18 17 30 30 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 32 32 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 33 33 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 34 34 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 35 35 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 37 37 H 1.00905 * 111.00436 * 176.04302 * 14 12 11 38 38 H 1.00905 * 110.99912 * 299.99773 * 14 12 11 39 39 H 0.97000 * 119.99464 * 0.02562 * 17 15 12 40 40 H 1.08997 * 109.47210 * 300.00124 * 18 17 15 41 41 H 1.09001 * 109.47390 * 60.00175 * 18 17 15 42 42 H 0.96706 * 113.99432 * 270.27123 * 22 21 20 43 43 H 1.08000 * 120.24882 * 359.97438 * 24 23 21 44 44 H 1.08001 * 119.54465 * 179.97438 * 25 24 23 45 45 H 1.08003 * 119.48060 * 179.97438 * 26 25 24 46 46 H 1.07992 * 120.20787 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 6 2.4747 -6.1499 -0.0018 13 1 3.1589 -6.0434 0.8401 14 7 3.2378 -6.1411 -1.2570 15 6 1.7254 -7.4517 0.1214 16 8 1.5131 -8.1248 -0.8648 17 7 1.2911 -7.8677 1.3275 18 6 0.5632 -9.1334 1.4473 19 6 0.1921 -9.3649 2.8895 20 7 1.0387 -10.0286 3.6616 21 6 0.7751 -10.2604 4.9382 22 8 1.6518 -10.9351 5.7169 23 6 -0.4499 -9.7887 5.4644 24 6 -0.8136 -9.9925 6.8010 25 6 -2.0079 -9.5140 7.2522 26 6 -2.8696 -8.8255 6.4023 27 6 -2.5452 -8.6104 5.0961 28 6 -1.3252 -9.0884 4.5983 29 7 -0.9573 -8.9045 3.3221 30 1 -0.4851 0.8400 0.0004 31 1 0.6242 -2.5567 -0.8904 32 1 0.6248 -2.5571 0.8896 33 1 2.8721 -3.6042 -0.8905 34 1 2.8721 -3.6043 0.8895 35 1 0.8535 -5.0450 0.8885 36 1 0.8542 -5.0446 -0.8914 37 1 3.9456 -6.8603 -1.2550 38 1 2.6255 -6.2385 -2.0531 39 1 1.4607 -7.3291 2.1162 40 1 -0.3422 -9.0905 0.8419 41 1 1.1950 -9.9504 1.0988 42 1 1.5179 -11.8928 5.7210 43 1 -0.1531 -10.5248 7.4695 44 1 -2.2894 -9.6711 8.2830 45 1 -3.8102 -8.4567 6.7840 46 1 -3.2238 -8.0750 4.4488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580051044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:11 Heat of formation + Delta-G solvation = -21.432138 kcal Electronic energy + Delta-G solvation = -28425.831759 eV Core-core repulsion = 24315.252658 eV Total energy + Delta-G solvation = -4110.579101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.03870 -39.96470 -38.61075 -38.25902 -35.76081 -34.90665 -33.77314 -33.29363 -31.95811 -31.30415 -30.99841 -28.46433 -27.39463 -25.19442 -24.86433 -23.39261 -22.79119 -22.18548 -20.31904 -19.95935 -19.50757 -19.17435 -18.34994 -17.28494 -16.94087 -16.37500 -16.21759 -15.82711 -15.66646 -15.38465 -14.94029 -14.80102 -14.60005 -14.41884 -14.29519 -13.94837 -13.49252 -13.16539 -13.07006 -12.89099 -12.68799 -12.62638 -12.33118 -12.16021 -11.73258 -11.43329 -11.35060 -11.12009 -11.09028 -10.71491 -10.59086 -10.38225 -10.21763 -9.85830 -9.79755 -9.56111 -9.28062 -9.17424 -9.00395 -8.91592 -8.51959 -8.25971 -5.91744 -3.93175 -0.42563 0.07892 1.22980 2.24239 2.57927 2.64735 3.04658 3.36513 3.37603 3.43307 3.47198 3.57507 3.71392 4.00383 4.18311 4.37601 4.52657 4.57026 4.63383 4.68676 4.83668 4.87537 5.11263 5.20575 5.26900 5.37043 5.40818 5.43927 5.46599 5.54392 5.67709 5.80664 5.99301 6.06849 6.15553 6.18722 6.44272 6.50203 6.71994 6.87386 7.06132 7.12054 7.29349 7.36730 7.55050 7.56781 7.79138 7.95173 8.09961 8.10539 8.53641 9.14581 9.70331 11.19758 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010120 B = 0.002193 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.239740 B =12767.011922 C =14572.906314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.100 4.100 11 C -0.104 4.104 12 C 0.080 3.920 13 H 0.101 0.899 14 N -0.810 5.810 15 C 0.488 3.512 16 O -0.547 6.547 17 N -0.721 5.721 18 C 0.190 3.810 19 C 0.330 3.670 20 N -0.532 5.532 21 C 0.407 3.593 22 O -0.467 6.467 23 C -0.173 4.173 24 C -0.072 4.072 25 C -0.118 4.118 26 C -0.076 4.076 27 C -0.097 4.097 28 C 0.170 3.830 29 N -0.487 5.487 30 H 0.259 0.741 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.338 0.662 38 H 0.351 0.649 39 H 0.404 0.596 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.412 0.588 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.675 -27.625 16.160 32.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.138 4.138 11 C -0.142 4.142 12 C -0.036 4.036 13 H 0.119 0.881 14 N -0.339 5.339 15 C 0.274 3.726 16 O -0.424 6.424 17 N -0.375 5.375 18 C 0.065 3.935 19 C 0.060 3.940 20 N -0.257 5.257 21 C 0.206 3.794 22 O -0.275 6.275 23 C -0.179 4.179 24 C -0.092 4.092 25 C -0.136 4.136 26 C -0.097 4.097 27 C -0.116 4.116 28 C 0.043 3.957 29 N -0.203 5.203 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.150 0.850 38 H 0.165 0.835 39 H 0.238 0.762 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.273 0.727 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.378 -26.524 14.795 30.558 hybrid contribution -0.235 -0.498 1.291 1.403 sum -3.612 -27.021 16.086 31.654 Atomic orbital electron populations 1.69968 1.06044 1.26421 1.51327 1.25032 0.94828 0.99205 0.95551 0.86619 0.79842 0.83603 0.78076 1.20695 1.21354 1.19908 1.21287 0.93076 0.91114 1.49891 0.92664 1.19123 0.94114 0.91622 0.96938 1.21540 0.98762 0.92303 1.01151 1.21657 0.96518 0.93958 1.02065 1.21762 0.95840 0.90601 0.95400 0.88148 1.59048 1.17314 1.54240 1.03255 1.22589 0.78942 0.88910 0.82185 1.90676 1.57528 1.57381 1.36819 1.45999 1.58111 1.22617 1.10764 1.19921 0.98432 0.88247 0.86929 1.22775 0.85485 0.89499 0.96207 1.67726 1.34526 1.18065 1.05374 1.19588 0.84412 0.89366 0.86012 1.84653 1.54345 1.24679 1.63826 1.19648 0.95708 1.05099 0.97438 1.20898 0.96780 0.98337 0.93200 1.21084 0.94070 0.97785 1.00627 1.21159 0.99771 0.95752 0.93013 1.20860 0.94684 0.99928 0.96138 1.18947 0.94535 0.93714 0.88540 1.68667 1.17668 1.19376 1.14550 0.93141 0.96742 0.96984 0.91794 0.93722 0.91915 0.91797 0.84960 0.83518 0.76211 0.88474 0.88732 0.72711 0.84245 0.84709 0.84360 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.65 13.29 55.43 0.74 -26.92 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.09 5.04 -26.73 -0.13 -2.23 16 11 C -0.10 -1.78 4.84 -26.73 -0.13 -1.91 16 12 C 0.08 1.14 3.15 -68.87 -0.22 0.92 16 13 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 14 N -0.81 -11.42 8.44 -5.65 -0.05 -11.47 16 15 C 0.49 6.93 7.07 -10.98 -0.08 6.86 16 16 O -0.55 -9.17 16.25 5.56 0.09 -9.08 16 17 N -0.72 -8.80 5.55 -61.48 -0.34 -9.14 16 18 C 0.19 2.19 6.07 -5.20 -0.03 2.16 16 19 C 0.33 3.79 6.99 -157.20 -1.10 2.69 16 20 N -0.53 -5.86 10.30 -10.40 -0.11 -5.97 16 21 C 0.41 3.71 7.89 -16.10 -0.13 3.58 16 22 O -0.47 -2.95 12.94 -17.55 -0.23 -3.18 16 23 C -0.17 -1.51 5.75 -106.71 -0.61 -2.13 16 24 C -0.07 -0.42 9.61 -39.60 -0.38 -0.81 16 25 C -0.12 -0.57 9.96 -39.89 -0.40 -0.97 16 26 C -0.08 -0.42 9.95 -39.91 -0.40 -0.82 16 27 C -0.10 -0.78 10.01 -39.56 -0.40 -1.18 16 28 C 0.17 1.74 6.61 -84.85 -0.56 1.18 16 29 N -0.49 -5.78 10.32 -8.80 -0.09 -5.88 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 31 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 1.38 7.75 -51.93 -0.40 0.97 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.34 4.14 9.06 -39.29 -0.36 3.78 16 38 H 0.35 5.09 8.58 -39.29 -0.34 4.76 16 39 H 0.40 4.57 8.46 -40.82 -0.35 4.22 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.41 0.36 9.06 45.56 0.41 0.77 16 43 H 0.14 0.51 7.72 -52.49 -0.41 0.10 16 44 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 45 H 0.14 0.41 8.06 -52.48 -0.42 -0.02 16 46 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -36.83 396.43 -9.77 -46.60 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.63 Total: 7.98 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -5.11 Total: -6.09 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.15 Total: -59.38 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -0.14 Total: -12.26 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.83 -9.77 -46.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580051044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.168 kcal (2) G-P(sol) polarization free energy of solvation -36.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds