Wall clock time and date at job start Wed Apr 1 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42890 * 114.00045 * 2 1 4 4 C 1.53000 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47241 * 65.00155 * 4 3 2 6 6 C 1.36939 * 119.99861 * 270.00061 * 5 4 3 7 7 H 1.07993 * 119.99751 * 143.33276 * 6 5 4 8 8 C 1.38815 * 119.99618 * 323.33417 * 6 5 4 9 9 N 1.31611 * 120.00277 * 338.55920 * 8 6 5 10 10 Si 1.86799 * 119.99540 * 158.56108 * 8 6 5 11 11 H 1.48509 * 109.47111 * 89.99961 * 10 8 6 12 12 H 1.48504 * 109.47252 * 209.99757 * 10 8 6 13 13 H 1.48496 * 109.47264 * 329.99824 * 10 8 6 14 14 C 1.46500 * 119.99967 * 90.00015 * 5 4 3 15 15 C 1.50705 * 109.46912 * 90.13559 * 14 5 4 16 16 C 1.40175 * 120.28454 * 269.63407 * 15 14 5 17 17 N 1.31322 * 120.22462 * 179.97438 * 16 15 14 18 18 C 1.33668 * 120.83716 * 359.97438 * 17 16 15 19 19 C 1.40019 * 132.55969 * 180.02562 * 18 17 16 20 20 C 1.48203 * 126.38605 * 359.97438 * 19 18 17 21 21 N 1.33766 * 126.32389 * 0.03125 * 20 19 18 22 22 N 1.28561 * 109.84289 * 179.97438 * 21 20 19 23 23 N 1.28903 * 109.75054 * 359.97438 * 22 21 20 24 24 H 0.97003 * 126.42133 * 179.97438 * 23 22 21 25 25 N 1.32084 * 126.32389 * 179.71685 * 20 19 18 26 26 C 1.39842 * 107.23375 * 179.97438 * 19 18 17 27 27 N 1.31130 * 108.86038 * 0.03626 * 26 19 18 28 28 N 1.37050 * 120.65806 * 0.02562 * 18 17 16 29 29 C 1.35573 * 120.28328 * 89.61633 * 15 14 5 30 30 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47462 * 299.99578 * 1 2 3 32 32 H 1.09008 * 109.47204 * 60.00163 * 1 2 3 33 33 H 1.08997 * 109.47589 * 59.99981 * 3 2 1 34 34 H 1.09007 * 109.47745 * 299.99986 * 3 2 1 35 35 H 1.09000 * 109.47201 * 305.00096 * 4 3 2 36 36 H 1.09003 * 109.46949 * 184.99899 * 4 3 2 37 37 H 0.97005 * 120.00219 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47075 * 330.13286 * 14 5 4 39 39 H 1.08998 * 109.46895 * 210.13618 * 14 5 4 40 40 H 1.07997 * 119.89127 * 359.95787 * 16 15 14 41 41 H 1.07999 * 125.56984 * 179.97438 * 26 19 18 42 42 H 1.07992 * 120.44275 * 359.74680 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.0967 -0.7971 -1.3369 7 1 3.8353 -1.3068 -2.2524 8 6 4.5555 -1.5218 -0.2455 9 7 5.2586 -0.9241 0.6929 10 14 4.1749 -3.3455 -0.1087 11 1 5.2533 -4.1269 -0.7661 12 1 4.0899 -3.7274 1.3238 13 1 2.8793 -3.6322 -0.7752 14 6 4.2864 1.4006 -2.4148 15 6 5.7450 1.7783 -2.3863 16 6 6.1593 2.9503 -1.7383 17 7 7.4307 3.2780 -1.7137 18 6 8.3490 2.5050 -2.3019 19 6 9.7396 2.6129 -2.4248 20 6 10.5880 3.7020 -1.8859 21 7 10.1666 4.7645 -1.1908 22 7 11.1685 5.5077 -0.8797 23 7 12.2554 4.9879 -1.3380 24 1 13.1509 5.3483 -1.2428 25 7 11.9004 3.7999 -1.9981 26 6 10.1788 1.5014 -3.1510 27 7 9.1425 0.7589 -3.4576 28 7 7.9832 1.3515 -2.9453 29 6 6.6679 0.9873 -2.9867 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1764 0.0889 37 1 5.5795 -1.4306 1.4554 38 1 3.6766 2.3036 -2.3860 39 1 4.0723 0.8466 -3.3288 40 1 5.4303 3.5860 -1.2579 41 1 11.2040 1.2898 -3.4168 42 1 6.3674 0.0785 -3.4868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605095174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:35 Heat of formation + Delta-G solvation = 228.026670 kcal Electronic energy + Delta-G solvation = -29532.150152 eV Core-core repulsion = 25361.140804 eV Total energy + Delta-G solvation = -4171.009348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.91252 -41.95260 -38.14606 -37.23707 -35.53338 -34.23307 -33.03566 -32.66353 -31.96191 -30.79936 -29.29359 -28.44413 -25.94263 -25.76773 -24.42425 -24.29745 -23.65390 -22.97619 -21.80631 -20.57136 -20.28672 -18.78673 -17.86256 -16.86407 -16.69654 -16.33613 -15.88728 -15.70391 -15.59001 -15.21789 -14.83689 -14.48357 -14.12884 -13.87590 -13.75849 -13.61993 -13.36342 -13.16164 -12.68351 -12.16223 -12.04889 -11.89790 -11.70856 -11.52329 -11.35884 -11.02505 -10.96808 -10.89761 -10.79608 -10.63804 -10.57905 -10.42654 -10.23990 -10.13074 -9.91384 -9.40955 -9.07039 -8.92148 -8.63131 -7.52335 -6.83403 -5.96208 -3.48536 0.71889 1.14963 1.33230 2.16599 2.21590 2.45798 3.16561 3.32181 3.40542 3.45029 3.85103 3.98105 4.15645 4.37107 4.39668 4.57514 4.64707 4.95470 5.15217 5.20910 5.31843 5.37882 5.52991 5.64364 5.70234 5.71878 5.73045 5.89028 5.96917 5.99699 6.05235 6.12868 6.18462 6.35423 6.45249 6.47843 6.50416 6.53672 6.65379 6.81326 7.48303 7.64610 7.66504 7.94473 7.97766 8.33990 8.39719 8.96106 9.59939 10.12274 11.03870 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.002969 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.960860 B = 9427.273167 C =10184.366390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.355 6.355 3 C 0.048 3.952 4 C 0.139 3.861 5 N -0.561 5.561 6 C -0.248 4.248 7 H 0.064 0.936 8 C 0.025 3.975 9 N -0.878 5.878 10 Si 0.901 3.099 11 H -0.288 1.288 12 H -0.289 1.289 13 H -0.274 1.274 14 C 0.187 3.813 15 C -0.175 4.175 16 C 0.207 3.793 17 N -0.461 5.461 18 C 0.316 3.684 19 C -0.212 4.212 20 C 0.316 3.684 21 N -0.281 5.281 22 N -0.002 5.002 23 N -0.312 5.312 24 H 0.464 0.536 25 N -0.317 5.317 26 C 0.130 3.870 27 N -0.318 5.318 28 N -0.290 5.290 29 C 0.163 3.837 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.030 0.970 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.258 0.742 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.174 0.826 41 H 0.198 0.802 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 8.985 -5.228 10.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C -0.031 4.031 4 C 0.013 3.987 5 N -0.278 5.278 6 C -0.377 4.377 7 H 0.082 0.918 8 C -0.177 4.177 9 N -0.519 5.519 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.215 1.215 13 H -0.199 1.199 14 C 0.058 3.942 15 C -0.185 4.185 16 C 0.025 3.975 17 N -0.172 5.172 18 C 0.080 3.920 19 C -0.230 4.230 20 C 0.036 3.964 21 N -0.159 5.159 22 N 0.001 4.999 23 N -0.158 5.158 24 H 0.317 0.683 25 N -0.161 5.161 26 C -0.052 4.052 27 N -0.140 5.140 28 N -0.057 5.057 29 C 0.026 3.974 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.123 0.877 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.191 0.809 41 H 0.215 0.785 42 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.359 8.825 -5.015 10.692 hybrid contribution 0.262 -0.973 0.313 1.055 sum 3.621 7.853 -4.702 9.843 Atomic orbital electron populations 1.22637 0.84070 1.01554 0.98487 1.88211 1.16682 1.27554 1.94847 1.23328 0.98249 0.84309 0.97193 1.21126 0.87936 0.96926 0.92719 1.44097 1.72377 1.02604 1.08676 1.18960 1.37591 0.80995 1.00201 0.91818 1.25134 0.95799 0.98208 0.98537 1.69934 1.33601 1.36298 1.12048 0.86338 0.78489 0.84947 0.77195 1.21506 1.21498 1.19933 1.20092 0.85259 0.95240 0.93565 1.21986 1.01891 0.95004 0.99615 1.23471 0.91574 0.92929 0.89500 1.68302 1.01219 1.29446 1.18258 1.20197 0.94121 0.84793 0.92931 1.16061 0.87497 0.99854 1.19612 1.22303 0.87697 0.92924 0.93469 1.75703 1.20420 1.03735 1.16083 1.78324 0.89547 1.19684 1.12324 1.50910 1.10985 1.15702 1.38174 0.68278 1.78842 1.13414 1.02446 1.21415 1.23729 0.98816 0.89789 0.92824 1.77760 0.88728 1.21299 1.26194 1.47026 1.07018 1.16868 1.34738 1.21942 0.77303 0.99951 0.98179 0.90719 0.95483 0.95185 0.95408 0.95164 0.87674 0.93851 0.93248 0.92142 0.91740 0.80879 0.78487 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.03 10.18 -35.23 -0.36 -7.39 16 3 C 0.05 0.84 6.28 37.16 0.23 1.08 16 4 C 0.14 2.78 5.72 -4.04 -0.02 2.75 16 5 N -0.56 -11.54 2.40 -174.61 -0.42 -11.96 16 6 C -0.25 -5.91 8.97 -15.06 -0.14 -6.04 16 7 H 0.06 1.52 7.92 -52.49 -0.42 1.10 16 8 C 0.03 0.64 4.96 -17.43 -0.09 0.56 16 9 N -0.88 -23.57 11.41 55.49 0.63 -22.93 16 10 Si 0.90 20.85 29.60 -169.99 -5.03 15.82 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 C 0.19 3.01 5.81 -5.19 -0.03 2.98 16 15 C -0.17 -2.90 5.44 -104.84 -0.57 -3.47 16 16 C 0.21 3.35 10.97 -17.04 -0.19 3.16 16 17 N -0.46 -8.54 10.47 -12.01 -0.13 -8.67 16 18 C 0.32 6.01 7.88 -155.46 -1.23 4.79 16 19 C -0.21 -3.75 6.17 -104.54 -0.65 -4.40 16 20 C 0.32 5.38 8.15 -156.41 -1.27 4.11 16 21 N -0.28 -4.95 12.34 32.10 0.40 -4.55 16 22 N 0.00 -0.03 13.42 60.35 0.81 0.78 16 23 N -0.31 -3.58 8.44 60.35 0.51 -3.07 16 24 H 0.46 2.90 8.96 -331.92 -2.98 -0.07 16 25 N -0.32 -4.56 12.90 32.11 0.41 -4.15 16 26 C 0.13 2.05 11.92 -17.25 -0.21 1.85 16 27 N -0.32 -5.67 12.62 30.67 0.39 -5.28 16 28 N -0.29 -5.40 3.89 -11.99 -0.05 -5.45 16 29 C 0.16 2.85 10.95 -16.41 -0.18 2.67 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 2.55 5.45 -51.93 -0.28 2.27 16 36 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 37 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.06 0.81 8.02 -51.93 -0.42 0.40 16 39 H 0.06 0.99 7.98 -51.93 -0.41 0.57 16 40 H 0.17 2.24 8.06 -52.49 -0.42 1.82 16 41 H 0.20 2.32 8.06 -52.49 -0.42 1.90 16 42 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -32.47 372.82 -7.87 -40.34 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.44 Total: -0.71 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -3.22 Total: 11.60 kcal Atomic # 7 Polarization: -67.84 SS G_CDS: 2.56 Total: -65.28 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.36 Total: -7.39 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.47 -7.87 -40.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605095174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 268.369 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 235.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 228.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds