Wall clock time and date at job start Wed Apr 1 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42890 * 114.00045 * 2 1 4 4 C 1.53000 * 109.47177 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47241 * 65.00155 * 4 3 2 6 6 C 1.36939 * 119.99861 * 270.00061 * 5 4 3 7 7 H 1.07993 * 119.99751 * 143.33276 * 6 5 4 8 8 C 1.38815 * 119.99618 * 323.33417 * 6 5 4 9 9 N 1.31611 * 120.00277 * 338.55920 * 8 6 5 10 10 Si 1.86799 * 119.99540 * 158.56108 * 8 6 5 11 11 H 1.48509 * 109.47111 * 89.99961 * 10 8 6 12 12 H 1.48504 * 109.47252 * 209.99757 * 10 8 6 13 13 H 1.48496 * 109.47264 * 329.99824 * 10 8 6 14 14 C 1.46500 * 119.99967 * 90.00015 * 5 4 3 15 15 C 1.50705 * 109.46912 * 90.13559 * 14 5 4 16 16 C 1.40175 * 120.28454 * 269.63407 * 15 14 5 17 17 N 1.31322 * 120.22462 * 179.97438 * 16 15 14 18 18 C 1.33668 * 120.83716 * 359.97438 * 17 16 15 19 19 C 1.40019 * 132.55969 * 180.02562 * 18 17 16 20 20 C 1.48203 * 126.38605 * 359.97438 * 19 18 17 21 21 N 1.33766 * 126.32389 * 0.03125 * 20 19 18 22 22 N 1.28561 * 109.84289 * 179.97438 * 21 20 19 23 23 N 1.28903 * 109.75054 * 359.97438 * 22 21 20 24 24 H 0.97003 * 126.42133 * 179.97438 * 23 22 21 25 25 N 1.32084 * 126.32389 * 179.71685 * 20 19 18 26 26 C 1.39842 * 107.23375 * 179.97438 * 19 18 17 27 27 N 1.31130 * 108.86038 * 0.03626 * 26 19 18 28 28 N 1.37050 * 120.65806 * 0.02562 * 18 17 16 29 29 C 1.35573 * 120.28328 * 89.61633 * 15 14 5 30 30 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47462 * 299.99578 * 1 2 3 32 32 H 1.09008 * 109.47204 * 60.00163 * 1 2 3 33 33 H 1.08997 * 109.47589 * 59.99981 * 3 2 1 34 34 H 1.09007 * 109.47745 * 299.99986 * 3 2 1 35 35 H 1.09000 * 109.47201 * 305.00096 * 4 3 2 36 36 H 1.09003 * 109.46949 * 184.99899 * 4 3 2 37 37 H 0.97005 * 120.00219 * 180.02562 * 9 8 6 38 38 H 1.08996 * 109.47075 * 330.13286 * 14 5 4 39 39 H 1.08998 * 109.46895 * 210.13618 * 14 5 4 40 40 H 1.07997 * 119.89127 * 359.95787 * 16 15 14 41 41 H 1.07999 * 125.56984 * 179.97438 * 26 19 18 42 42 H 1.07992 * 120.44275 * 359.74680 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.0967 -0.7971 -1.3369 7 1 3.8353 -1.3068 -2.2524 8 6 4.5555 -1.5218 -0.2455 9 7 5.2586 -0.9241 0.6929 10 14 4.1749 -3.3455 -0.1087 11 1 5.2533 -4.1269 -0.7661 12 1 4.0899 -3.7274 1.3238 13 1 2.8793 -3.6322 -0.7752 14 6 4.2864 1.4006 -2.4148 15 6 5.7450 1.7783 -2.3863 16 6 6.1593 2.9503 -1.7383 17 7 7.4307 3.2780 -1.7137 18 6 8.3490 2.5050 -2.3019 19 6 9.7396 2.6129 -2.4248 20 6 10.5880 3.7020 -1.8859 21 7 10.1666 4.7645 -1.1908 22 7 11.1685 5.5077 -0.8797 23 7 12.2554 4.9879 -1.3380 24 1 13.1509 5.3483 -1.2428 25 7 11.9004 3.7999 -1.9981 26 6 10.1788 1.5014 -3.1510 27 7 9.1425 0.7589 -3.4576 28 7 7.9832 1.3515 -2.9453 29 6 6.6679 0.9873 -2.9867 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 1.6886 1.8463 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1764 0.0889 37 1 5.5795 -1.4306 1.4554 38 1 3.6766 2.3036 -2.3860 39 1 4.0723 0.8466 -3.3288 40 1 5.4303 3.5860 -1.2579 41 1 11.2040 1.2898 -3.4168 42 1 6.3674 0.0785 -3.4868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605095174.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:35 Heat of formation + Delta-G solvation = 205.642503 kcal Electronic energy + Delta-G solvation = -29533.120802 eV Core-core repulsion = 25361.140804 eV Total energy + Delta-G solvation = -4171.979998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.08456 -43.27792 -39.49247 -38.60579 -37.01980 -35.51970 -34.31489 -33.93540 -33.46785 -32.27618 -30.62767 -29.85771 -27.46081 -26.99773 -25.72391 -25.49453 -25.13435 -24.30494 -23.12879 -21.89908 -21.74518 -19.93387 -19.20656 -18.52217 -18.00650 -17.53253 -17.25771 -16.99694 -16.90260 -16.65982 -16.38983 -15.78206 -15.50891 -15.35613 -15.09640 -15.04100 -14.76053 -14.43262 -14.00386 -13.50685 -13.41068 -13.24276 -13.12154 -12.80254 -12.72730 -12.71717 -12.51123 -12.32071 -12.24216 -11.98102 -11.88119 -11.82772 -11.73768 -11.51568 -11.45302 -10.76137 -10.48193 -10.38136 -10.22893 -8.85853 -8.53302 -7.77930 -5.32797 -0.55596 -0.11398 0.08440 0.93120 0.97381 1.40613 1.45707 1.51867 1.58723 1.88936 2.49030 2.60192 2.78610 2.88681 3.11584 3.29970 3.39671 3.43739 3.65775 3.82060 3.96812 4.08618 4.32128 4.35678 4.45777 4.52666 4.63059 4.64603 4.70630 4.74490 4.83904 4.88849 4.93930 5.01467 5.04699 5.17675 5.20598 5.24392 5.50365 5.75244 5.82772 5.90890 6.32680 6.48300 6.64885 6.75138 7.22402 7.23217 7.91979 8.38709 9.17593 Molecular weight = 344.14amu Principal moments of inertia in cm(-1) A = 0.015264 B = 0.002969 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.960860 B = 9427.273167 C =10184.366390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.054 3.946 4 C 0.136 3.864 5 N -0.574 5.574 6 C -0.233 4.233 7 H 0.060 0.940 8 C -0.019 4.019 9 N -0.912 5.912 10 Si 0.937 3.063 11 H -0.293 1.293 12 H -0.303 1.303 13 H -0.272 1.272 14 C 0.190 3.810 15 C -0.170 4.170 16 C 0.209 3.791 17 N -0.480 5.480 18 C 0.296 3.704 19 C -0.224 4.224 20 C 0.301 3.699 21 N -0.318 5.318 22 N -0.002 5.002 23 N -0.276 5.276 24 H 0.486 0.514 25 N -0.308 5.308 26 C 0.143 3.857 27 N -0.338 5.338 28 N -0.303 5.303 29 C 0.155 3.845 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.207 0.793 41 H 0.235 0.765 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.996 10.746 -6.367 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.024 4.024 4 C 0.011 3.989 5 N -0.292 5.292 6 C -0.364 4.364 7 H 0.078 0.922 8 C -0.216 4.216 9 N -0.556 5.556 10 Si 0.767 3.233 11 H -0.221 1.221 12 H -0.230 1.230 13 H -0.197 1.197 14 C 0.063 3.937 15 C -0.179 4.179 16 C 0.028 3.972 17 N -0.192 5.192 18 C 0.060 3.940 19 C -0.243 4.243 20 C 0.020 3.980 21 N -0.195 5.195 22 N 0.002 4.998 23 N -0.128 5.128 24 H 0.345 0.655 25 N -0.154 5.154 26 C -0.039 4.039 27 N -0.160 5.160 28 N -0.070 5.070 29 C 0.020 3.980 30 H 0.095 0.905 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.224 0.776 41 H 0.251 0.749 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.480 10.615 -6.185 12.768 hybrid contribution 0.363 -1.333 0.540 1.483 sum 3.843 9.282 -5.645 11.523 Atomic orbital electron populations 1.22788 0.81777 1.02352 1.00065 1.88140 1.19366 1.29025 1.95214 1.23232 0.96339 0.83939 0.98937 1.21045 0.89905 0.96811 0.91186 1.44097 1.73412 1.02022 1.09695 1.19047 1.35101 0.82950 0.99259 0.92223 1.25480 0.97101 0.99794 0.99272 1.70060 1.36401 1.36430 1.12684 0.85773 0.78105 0.83376 0.76028 1.22062 1.22987 1.19671 1.20221 0.85250 0.96254 0.92021 1.22060 1.01748 0.95114 0.98982 1.24030 0.91508 0.93015 0.88657 1.68354 1.02028 1.29853 1.18952 1.20572 0.94965 0.85090 0.93362 1.16371 0.87421 1.00632 1.19833 1.22257 0.88349 0.93064 0.94293 1.75676 1.21837 1.04573 1.17443 1.78260 0.89806 1.19368 1.12387 1.50924 1.11691 1.14343 1.35822 0.65482 1.78786 1.12264 1.03134 1.21203 1.24299 0.99823 0.88477 0.91291 1.77717 0.89100 1.22182 1.26989 1.47136 1.07387 1.17136 1.35341 1.22276 0.77513 1.00120 0.98116 0.90463 0.93850 0.93497 0.93768 0.93003 0.92001 0.91861 0.94697 0.88409 0.90737 0.77601 0.74904 0.79902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -15.31 10.18 -148.98 -1.52 -16.83 16 3 C 0.05 1.77 6.28 71.98 0.45 2.23 16 4 C 0.14 5.31 5.72 86.38 0.49 5.80 16 5 N -0.57 -22.89 2.40 -706.33 -1.69 -24.58 16 6 C -0.23 -11.06 8.97 84.03 0.75 -10.30 16 7 H 0.06 2.83 7.92 -2.91 -0.02 2.80 16 8 C -0.02 -0.97 4.96 84.86 0.42 -0.55 16 9 N -0.91 -50.57 11.41 21.65 0.25 -50.32 16 10 Si 0.94 43.92 29.60 68.60 2.03 45.95 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 12 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 13 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 14 C 0.19 5.64 5.81 85.63 0.50 6.14 16 15 C -0.17 -5.35 5.44 -20.01 -0.11 -5.46 16 16 C 0.21 6.40 10.97 85.24 0.93 7.33 16 17 N -0.48 -17.41 10.47 -191.92 -2.01 -19.42 16 18 C 0.30 11.14 7.88 133.55 1.05 12.19 16 19 C -0.22 -7.78 6.17 -19.81 -0.12 -7.90 16 20 C 0.30 9.88 8.15 137.30 1.12 11.00 16 21 N -0.32 -10.88 12.34 -52.36 -0.65 -11.53 16 22 N 0.00 -0.05 13.42 37.02 0.50 0.44 16 23 N -0.28 -5.66 8.44 37.02 0.31 -5.34 16 24 H 0.49 4.59 8.96 -340.35 -3.05 1.54 16 25 N -0.31 -8.23 12.90 -52.33 -0.68 -8.90 16 26 C 0.14 4.32 11.92 85.19 1.02 5.33 16 27 N -0.34 -11.85 12.62 -56.89 -0.72 -12.56 16 28 N -0.30 -11.19 3.89 -191.85 -0.75 -11.93 16 29 C 0.16 5.35 10.95 83.34 0.91 6.27 16 30 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.06 3.05 5.45 -2.39 -0.01 3.04 16 36 H 0.06 2.13 8.07 -2.39 -0.02 2.11 16 37 H 0.24 13.65 8.31 -92.70 -0.77 12.88 16 38 H 0.10 2.21 8.02 -2.39 -0.02 2.19 16 39 H 0.07 2.09 7.98 -2.39 -0.02 2.07 16 40 H 0.21 4.71 8.06 -2.91 -0.02 4.68 16 41 H 0.23 4.94 8.06 -2.91 -0.02 4.91 16 42 H 0.18 5.92 8.06 -2.91 -0.02 5.90 16 Total: -1.00 -72.48 372.82 1.79 -70.69 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -1.96 Total: 10.27 kcal Atomic # 6 Polarization: 25.40 SS G_CDS: 8.67 Total: 34.07 kcal Atomic # 7 Polarization: -138.73 SS G_CDS: -5.43 Total: -144.16 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: -1.52 Total: -16.83 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.48 1.79 -70.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605095174.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 276.328 kcal (2) G-P(sol) polarization free energy of solvation -72.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 203.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds