Wall clock time and date at job start Wed Apr 1 2020 02:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 120.00027 * 2 1 4 4 H 1.48496 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47023 * 299.99995 * 3 2 1 6 6 H 1.48502 * 109.47152 * 59.99792 * 3 2 1 7 7 C 1.38812 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99681 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00175 * 359.97438 * 7 2 1 10 10 C 1.47433 * 125.64813 * 14.64280 * 9 7 2 11 11 C 1.54906 * 104.83054 * 155.90642 * 10 9 7 12 12 C 1.55154 * 101.58687 * 37.00834 * 11 10 9 13 13 C 1.47026 * 125.65289 * 194.68277 * 9 7 2 14 14 H 1.09003 * 109.87870 * 300.59569 * 13 9 7 15 15 C 1.53000 * 109.88345 * 61.60512 * 13 9 7 16 16 C 1.52995 * 109.47178 * 185.24327 * 15 13 9 17 17 C 1.53000 * 109.47184 * 174.94943 * 16 15 13 18 18 N 1.46495 * 109.47454 * 179.97438 * 17 16 15 19 19 C 1.34776 * 120.00587 * 179.97438 * 18 17 16 20 20 O 1.21562 * 119.99344 * 0.02562 * 19 18 17 21 21 C 1.47791 * 120.00285 * 180.02562 * 19 18 17 22 22 C 1.41153 * 118.95066 * 359.97438 * 21 19 18 23 23 C 1.35403 * 121.76053 * 179.97438 * 22 21 19 24 24 C 1.45286 * 119.10051 * 359.97438 * 23 22 21 25 25 N 1.30886 * 138.54113 * 180.02562 * 24 23 22 26 26 O 1.21484 * 109.07355 * 180.02562 * 25 24 23 27 27 N 1.21476 * 116.30224 * 359.97438 * 26 25 24 28 28 C 1.31068 * 109.07765 * 0.02562 * 27 26 25 29 29 C 1.37780 * 118.94815 * 179.73194 * 21 19 18 30 30 H 0.96999 * 119.99735 * 0.02562 * 1 2 3 31 31 H 1.08996 * 110.36166 * 274.74510 * 10 9 7 32 32 H 1.08996 * 110.36383 * 37.06498 * 10 9 7 33 33 H 1.08997 * 111.00231 * 155.08754 * 11 10 9 34 34 H 1.08999 * 111.00168 * 278.89452 * 11 10 9 35 35 H 1.08993 * 110.72297 * 206.13518 * 12 11 10 36 36 H 1.08999 * 110.71844 * 82.86016 * 12 11 10 37 37 H 1.09000 * 109.46883 * 65.23883 * 15 13 9 38 38 H 1.09007 * 109.46869 * 305.24610 * 15 13 9 39 39 H 1.09000 * 109.47232 * 54.94890 * 16 15 13 40 40 H 1.08995 * 109.47156 * 294.94985 * 16 15 13 41 41 H 1.09005 * 109.47096 * 300.00099 * 17 16 15 42 42 H 1.09000 * 109.47079 * 59.99853 * 17 16 15 43 43 H 0.97003 * 119.99844 * 359.97438 * 18 17 16 44 44 H 1.07995 * 119.11798 * 0.02562 * 22 21 19 45 45 H 1.08006 * 120.44579 * 180.02562 * 23 22 21 46 46 H 1.07999 * 120.14501 * 0.02562 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1079 -2.5526 -0.3029 11 6 -0.2476 -4.0214 -0.7747 12 6 0.7643 -4.7443 0.1531 13 6 1.8982 -3.7081 0.3018 14 1 2.7026 -3.9325 -0.3987 15 6 2.4355 -3.7266 1.7342 16 6 3.1444 -5.0569 1.9958 17 6 3.7900 -5.0267 3.3826 18 7 4.4683 -6.3007 3.6334 19 6 5.1121 -6.5034 4.8000 20 8 5.1294 -5.6290 5.6443 21 6 5.7968 -7.7884 5.0527 22 6 5.7621 -8.7885 4.0572 23 6 6.3702 -9.9861 4.2285 24 6 7.0778 -10.2481 5.4701 25 7 7.7663 -11.2151 6.0214 26 8 8.1356 -10.8612 7.1234 27 7 7.8078 -9.7432 7.4676 28 6 7.1067 -9.1883 6.5093 29 6 6.4530 -7.9702 6.2505 30 1 -0.4850 0.8401 -0.0004 31 1 -0.7062 -2.3831 0.5923 32 1 -0.4091 -1.8689 -1.0965 33 1 -1.2603 -4.3898 -0.6106 34 1 0.0385 -4.1244 -1.8214 35 1 1.1341 -5.6561 -0.3157 36 1 0.3123 -4.9628 1.1206 37 1 1.6079 -3.6120 2.4342 38 1 3.1409 -2.9064 1.8682 39 1 3.9142 -5.2132 1.2400 40 1 2.4199 -5.8699 1.9499 41 1 4.5146 -4.2137 3.4284 42 1 3.0203 -4.8704 4.1383 43 1 4.4541 -6.9986 2.9598 44 1 5.2371 -8.5929 3.1339 45 1 6.3306 -10.7360 3.4522 46 1 6.4624 -7.1820 6.9888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663105730.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:06 Heat of formation + Delta-G solvation = 121.171505 kcal Electronic energy + Delta-G solvation = -28397.382215 eV Core-core repulsion = 24292.986872 eV Total energy + Delta-G solvation = -4104.395343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -47.18786 -40.54969 -38.42411 -37.84848 -35.77189 -35.30818 -33.98691 -32.94367 -32.16646 -31.65615 -29.45689 -28.50062 -26.66523 -25.52202 -24.78659 -23.95289 -21.87879 -21.78621 -21.63136 -20.17655 -19.49757 -19.45247 -19.10000 -18.49178 -17.87319 -16.75924 -16.28297 -15.88383 -15.15656 -15.12318 -14.99056 -14.83593 -14.57880 -14.29825 -13.94355 -13.80538 -13.48879 -13.31882 -12.88718 -12.41136 -12.35980 -12.33792 -12.09230 -11.95857 -11.83622 -11.77018 -11.51738 -11.06036 -10.84767 -10.78901 -10.62169 -10.50129 -10.38537 -10.06606 -10.01603 -9.79569 -9.64966 -9.64217 -9.37969 -9.17268 -8.58301 -6.77587 -5.75037 -3.10137 -0.70150 0.33194 1.27311 2.12382 2.38814 2.68516 2.96344 3.02831 3.13193 3.38289 3.44622 3.46537 3.98908 4.03521 4.17960 4.35391 4.48235 4.58721 4.87728 4.95458 5.09497 5.16383 5.27425 5.34593 5.41795 5.42808 5.54934 5.57602 5.65192 5.69132 5.80885 5.87737 5.95516 6.04581 6.17414 6.26906 6.31701 6.39070 6.54215 6.67252 6.70155 6.92711 7.11174 7.15809 7.54424 7.63256 7.80369 7.80427 7.87892 8.29307 9.20366 9.81993 10.51147 11.37380 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.001745 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.849940 B =16042.814277 C =17001.025673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.075 0.925 9 N -0.596 5.596 10 C 0.173 3.827 11 C -0.151 4.151 12 C -0.124 4.124 13 C 0.162 3.838 14 H 0.031 0.969 15 C -0.122 4.122 16 C -0.128 4.128 17 C 0.116 3.884 18 N -0.718 5.718 19 C 0.553 3.447 20 O -0.527 6.527 21 C -0.098 4.098 22 C -0.072 4.072 23 C -0.058 4.058 24 C 0.023 3.977 25 N -0.341 5.341 26 O 0.379 5.621 27 N -0.330 5.330 28 C 0.011 3.989 29 C 0.004 3.996 30 H 0.252 0.748 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.400 0.600 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.638 -22.753 7.345 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.092 0.908 9 N -0.320 5.320 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.162 4.162 13 C 0.055 3.945 14 H 0.048 0.952 15 C -0.163 4.163 16 C -0.166 4.166 17 C -0.006 4.006 18 N -0.370 5.370 19 C 0.339 3.661 20 O -0.404 6.404 21 C -0.106 4.106 22 C -0.093 4.093 23 C -0.078 4.078 24 C -0.132 4.132 25 N -0.063 5.063 26 O 0.140 5.860 27 N -0.049 5.049 28 C -0.142 4.142 29 C -0.017 4.017 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.235 0.765 44 H 0.167 0.833 45 H 0.174 0.826 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.211 -22.520 8.629 26.595 hybrid contribution -0.043 1.076 -0.733 1.303 sum 11.168 -21.444 7.896 25.434 Atomic orbital electron populations 1.69951 1.04979 1.25004 1.56492 1.24908 0.95666 0.97783 1.01914 0.86108 0.78881 0.83929 0.77243 1.20445 1.21809 1.21705 1.18999 0.90331 0.82325 1.43802 0.90762 1.44552 1.06189 1.01337 1.79963 1.21405 0.85214 0.90002 0.98614 1.23011 0.97519 0.99833 0.98571 1.22588 0.97185 0.97101 0.99333 1.20928 0.93913 0.87045 0.92643 0.95167 1.22037 0.99905 0.94535 0.99795 1.21850 0.99845 1.00469 0.94473 1.21621 0.96593 0.84199 0.98197 1.46025 1.54212 1.19019 1.17700 1.18008 0.79156 0.86410 0.82545 1.90843 1.60349 1.44351 1.44825 1.19872 1.00476 0.95483 0.94731 1.21011 0.97661 0.91814 0.98848 1.20858 0.96283 0.97947 0.92712 1.24164 1.00319 0.89553 0.99137 1.75219 1.13685 1.21666 0.95718 1.85434 1.52462 1.23405 1.24701 1.75309 1.13220 0.95047 1.21307 1.22692 1.01756 0.98966 0.90790 1.20276 0.91566 0.93049 0.96789 0.93778 0.95821 0.91318 0.92572 0.92504 0.92665 0.92043 0.92175 0.91533 0.91616 0.91606 0.90896 0.90999 0.76466 0.83284 0.82634 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.56 10.58 55.49 0.59 -25.97 16 2 C -0.01 -0.17 5.47 -17.43 -0.10 -0.26 16 3 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.07 9.71 -15.06 -0.15 -6.22 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.60 -14.49 3.13 -162.57 -0.51 -15.00 16 10 C 0.17 4.07 5.41 -2.53 -0.01 4.06 16 11 C -0.15 -2.72 7.08 -24.59 -0.17 -2.90 16 12 C -0.12 -1.98 5.71 -24.90 -0.14 -2.12 16 13 C 0.16 3.05 3.16 -66.95 -0.21 2.84 16 14 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 15 C -0.12 -2.01 4.72 -26.73 -0.13 -2.13 16 16 C -0.13 -1.44 5.10 -26.73 -0.14 -1.57 16 17 C 0.12 1.30 5.67 -4.04 -0.02 1.27 16 18 N -0.72 -6.18 5.50 -61.27 -0.34 -6.52 16 19 C 0.55 5.73 7.75 -12.35 -0.10 5.63 16 20 O -0.53 -7.63 16.21 5.31 0.09 -7.54 16 21 C -0.10 -0.77 5.86 -105.05 -0.62 -1.38 16 22 C -0.07 -0.35 9.39 -39.49 -0.37 -0.72 16 23 C -0.06 -0.30 10.27 -37.79 -0.39 -0.69 16 24 C 0.02 0.19 7.94 -81.26 -0.65 -0.46 16 25 N -0.34 -3.00 12.28 32.75 0.40 -2.60 16 26 O 0.38 3.30 11.67 26.94 0.31 3.61 16 27 N -0.33 -3.15 12.29 31.88 0.39 -2.75 16 28 C 0.01 0.10 7.75 -83.07 -0.64 -0.55 16 29 C 0.00 0.04 9.60 -38.84 -0.37 -0.34 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 32 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.93 7.76 -51.93 -0.40 0.53 16 37 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 38 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.65 7.64 -51.93 -0.40 0.25 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.40 2.09 6.36 -40.82 -0.26 1.83 16 44 H 0.15 0.27 6.23 -52.49 -0.33 -0.05 16 45 H 0.16 0.40 8.06 -52.48 -0.42 -0.03 16 46 H 0.16 1.42 7.52 -52.49 -0.39 1.03 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -32.63 380.68 -8.86 -41.49 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.31 Total: -1.71 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.20 Total: -5.54 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.54 Total: -52.85 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: 0.40 Total: -3.93 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.63 -8.86 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663105730.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.660 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds