Wall clock time and date at job start Wed Apr 1 2020 02:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99727 * 2 1 4 4 H 1.48497 * 109.47361 * 270.00079 * 3 2 1 5 5 H 1.48510 * 109.47149 * 29.99936 * 3 2 1 6 6 H 1.48499 * 109.46953 * 149.99752 * 3 2 1 7 7 C 1.38812 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00030 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99747 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99803 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46832 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.50175 * 304.93733 * 12 11 10 14 14 C 1.53110 * 109.48492 * 184.85647 * 12 11 10 15 15 C 1.53042 * 109.49839 * 178.70375 * 14 12 11 16 16 C 1.53186 * 109.34100 * 61.34942 * 15 14 12 17 17 N 1.46927 * 108.77732 * 305.34718 * 16 15 14 18 18 C 1.34776 * 120.63149 * 233.63467 * 17 16 15 19 19 O 1.21561 * 120.00217 * 174.51184 * 18 17 16 20 20 C 1.47803 * 120.00157 * 354.51100 * 18 17 16 21 21 C 1.41154 * 118.94444 * 322.64356 * 20 18 17 22 22 C 1.35403 * 121.75841 * 179.97438 * 21 20 18 23 23 C 1.45297 * 119.09722 * 0.02562 * 22 21 20 24 24 N 1.30882 * 138.53512 * 179.97438 * 23 22 21 25 25 O 1.21487 * 109.06987 * 180.02562 * 24 23 22 26 26 N 1.21470 * 116.30393 * 0.02562 * 25 24 23 27 27 C 1.31069 * 109.07911 * 359.97438 * 26 25 24 28 28 C 1.37765 * 118.95016 * 142.37853 * 20 18 17 29 29 C 1.46925 * 118.73795 * 53.60725 * 17 16 15 30 30 H 0.96996 * 119.99858 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00120 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47126 * 60.00299 * 10 9 7 33 33 H 1.08999 * 109.47303 * 299.99841 * 10 9 7 34 34 H 1.09001 * 109.47464 * 60.00251 * 11 10 9 35 35 H 1.08996 * 109.47843 * 300.00123 * 11 10 9 36 36 H 1.08997 * 109.50698 * 58.67829 * 14 12 11 37 37 H 1.09001 * 109.44896 * 298.69248 * 14 12 11 38 38 H 1.08998 * 109.50088 * 301.37525 * 15 14 12 39 39 H 1.09001 * 109.49328 * 181.31274 * 15 14 12 40 40 H 1.09003 * 109.59258 * 65.13321 * 16 15 14 41 41 H 1.09000 * 109.59121 * 185.41401 * 16 15 14 42 42 H 1.07996 * 119.12701 * 0.02562 * 21 20 18 43 43 H 1.08005 * 120.45086 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.14495 * 359.97438 * 28 20 18 45 45 H 1.08999 * 109.58427 * 66.18157 * 29 17 16 46 46 H 1.09002 * 109.58924 * 186.60798 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1375 -0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0000 12 6 6.3815 -3.5162 0.0006 13 1 6.0538 -4.1251 0.8431 14 6 7.8824 -3.2393 0.1228 15 6 8.6454 -4.5655 0.1560 16 6 8.3984 -5.3258 -1.1507 17 7 6.9495 -5.4689 -1.3479 18 6 6.4020 -6.6818 -1.5610 19 8 5.1938 -6.8009 -1.6233 20 6 7.2704 -7.8673 -1.7189 21 6 8.4920 -7.7316 -2.4130 22 6 9.3311 -8.7794 -2.5905 23 6 8.9634 -10.0781 -2.0524 24 7 9.4516 -11.2912 -1.9982 25 8 8.6759 -12.0046 -1.3939 26 7 7.6618 -11.4740 -0.9871 27 6 7.6754 -10.2078 -1.3254 28 6 6.8644 -9.0681 -1.1793 29 6 6.1088 -4.2646 -1.3079 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3620 0.0004 32 1 3.8493 -3.0421 -0.8902 33 1 3.8486 -3.0426 0.8897 34 1 5.8798 -1.6196 0.8900 35 1 5.8798 -1.6195 -0.8899 36 1 8.0767 -2.6854 1.0413 37 1 8.2137 -2.6510 -0.7329 38 1 8.2970 -5.1648 0.9972 39 1 9.7119 -4.3688 0.2665 40 1 8.8274 -4.7693 -1.9840 41 1 8.8606 -6.3113 -1.0931 42 1 8.7653 -6.7661 -2.8124 43 1 10.2606 -8.6518 -3.1254 44 1 5.9253 -9.1349 -0.6501 45 1 6.3511 -3.6216 -2.1540 46 1 5.0580 -4.5508 -1.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666139442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:43 Heat of formation + Delta-G solvation = 124.630093 kcal Electronic energy + Delta-G solvation = -29323.149740 eV Core-core repulsion = 25218.904373 eV Total energy + Delta-G solvation = -4104.245368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -47.16496 -41.04573 -38.83383 -37.82947 -35.66898 -35.29627 -34.19061 -33.27858 -32.33251 -31.69973 -31.00874 -28.28108 -27.10887 -25.75647 -25.10641 -24.22176 -22.50147 -21.87357 -21.35590 -20.83133 -20.03005 -19.43348 -19.36222 -18.47780 -17.52178 -17.14564 -16.64639 -15.82706 -15.58672 -15.00411 -14.92888 -14.84220 -14.54082 -14.32731 -14.03693 -13.79625 -13.56470 -13.48057 -13.41659 -13.32092 -12.97882 -12.72246 -12.38327 -12.33039 -12.28314 -11.87047 -11.67698 -11.40936 -11.35646 -11.26335 -10.95286 -10.70451 -10.60566 -10.48206 -10.30596 -10.13090 -10.01728 -9.56383 -9.23123 -8.93483 -8.86594 -7.20547 -5.74125 -3.09693 -0.66749 0.36940 1.28877 2.10814 2.33239 2.64049 2.83797 2.89453 3.14802 3.37646 3.39910 3.45547 3.81212 4.04506 4.11162 4.27404 4.42064 4.56262 4.59614 4.60499 4.60686 4.76170 4.89002 4.92900 5.04149 5.15776 5.21537 5.29178 5.36497 5.42353 5.44697 5.49425 5.54447 5.62544 5.65382 5.73546 5.78888 5.85451 5.95418 6.06059 6.15399 6.19546 6.31915 6.76109 6.78447 6.99201 7.73872 7.90227 8.03090 8.44945 9.24156 9.96271 10.16093 11.44397 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002047 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.116057 B =13675.668198 C =14536.014487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.757 5.757 10 C 0.154 3.846 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.077 0.923 14 C -0.116 4.116 15 C -0.135 4.135 16 C 0.092 3.908 17 N -0.602 5.602 18 C 0.556 3.444 19 O -0.516 6.516 20 C -0.092 4.092 21 C -0.075 4.075 22 C -0.062 4.062 23 C 0.023 3.977 24 N -0.342 5.342 25 O 0.378 5.622 26 N -0.330 5.330 27 C 0.013 3.987 28 C -0.003 4.003 29 C 0.113 3.887 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.073 0.927 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.670 -17.833 -4.142 33.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.194 4.194 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.108 0.892 9 N -0.403 5.403 10 C 0.027 3.973 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.095 0.905 14 C -0.154 4.154 15 C -0.173 4.173 16 C -0.030 4.030 17 N -0.335 5.335 18 C 0.342 3.658 19 O -0.392 6.392 20 C -0.100 4.100 21 C -0.096 4.096 22 C -0.082 4.082 23 C -0.132 4.132 24 N -0.064 5.064 25 O 0.139 5.861 26 N -0.049 5.049 27 C -0.140 4.140 28 C -0.024 4.024 29 C -0.008 4.008 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.176 0.824 45 H 0.092 0.908 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 26.961 -19.116 -3.987 33.290 hybrid contribution 0.414 2.092 -0.076 2.134 sum 27.375 -17.024 -4.063 32.492 Atomic orbital electron populations 1.69711 1.05087 1.25753 1.57733 1.24700 0.95278 0.97231 1.02202 0.86516 0.79143 0.84958 0.77713 1.21108 1.21761 1.20402 1.19089 0.80694 0.94774 1.42719 0.89212 1.42721 1.04083 1.02277 1.91206 1.20698 0.88591 0.89267 0.98742 1.21786 0.96345 0.95669 1.02319 1.21470 0.95012 0.97204 0.97896 0.90467 1.21621 0.94598 0.96527 1.02637 1.21934 1.00813 0.97261 0.97332 1.22242 0.80581 1.01674 0.98519 1.48020 1.08300 1.06682 1.70462 1.18097 0.87545 0.82592 0.77519 1.90889 1.13855 1.84876 1.49589 1.19814 0.95696 0.94048 1.00401 1.21209 0.91906 0.99777 0.96715 1.20850 1.01235 0.86091 1.00016 1.24150 0.93238 0.94431 1.01381 1.75211 1.15333 1.02870 1.12958 1.85432 1.18447 1.35703 1.46509 1.75312 1.04936 1.08086 1.16559 1.22662 0.97330 0.92508 1.01479 1.20188 0.98296 0.86926 0.96944 1.21932 0.96886 0.84313 0.97688 0.93101 0.80761 0.95319 0.95658 0.91515 0.91748 0.91299 0.91560 0.91320 0.90523 0.90627 0.89025 0.82663 0.82683 0.82436 0.90828 0.87767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.85 13.97 55.49 0.78 -29.08 16 2 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 3 Si 0.89 22.23 27.74 -169.99 -4.71 17.52 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.76 -18.21 5.41 -59.91 -0.32 -18.54 16 10 C 0.15 2.94 6.02 -4.04 -0.02 2.92 16 11 C -0.12 -1.70 4.80 -26.73 -0.13 -1.82 16 12 C -0.10 -1.04 2.34 -90.46 -0.21 -1.25 16 13 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.12 -0.91 5.17 -26.65 -0.14 -1.05 16 15 C -0.14 -0.81 6.08 -26.61 -0.16 -0.97 16 16 C 0.09 0.51 4.74 -3.71 -0.02 0.49 16 17 N -0.60 -5.51 2.97 -173.90 -0.52 -6.03 16 18 C 0.56 6.08 7.30 -12.35 -0.09 5.99 16 19 O -0.52 -7.95 16.19 5.31 0.09 -7.86 16 20 C -0.09 -0.75 5.23 -105.05 -0.55 -1.30 16 21 C -0.07 -0.39 7.15 -39.49 -0.28 -0.67 16 22 C -0.06 -0.32 10.28 -37.79 -0.39 -0.70 16 23 C 0.02 0.18 7.94 -81.25 -0.65 -0.46 16 24 N -0.34 -3.01 12.28 32.75 0.40 -2.60 16 25 O 0.38 3.33 11.67 26.94 0.31 3.65 16 26 N -0.33 -3.21 12.29 31.88 0.39 -2.82 16 27 C 0.01 0.12 7.75 -83.07 -0.64 -0.52 16 28 C 0.00 -0.02 9.59 -38.85 -0.37 -0.40 16 29 C 0.11 1.26 5.33 -3.71 -0.02 1.24 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.36 8.33 5.53 -40.82 -0.23 8.10 16 32 H 0.03 0.56 6.70 -51.93 -0.35 0.22 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.29 8.04 -51.93 -0.42 -0.13 16 41 H 0.09 0.37 4.54 -51.93 -0.24 0.13 16 42 H 0.16 0.44 6.11 -52.49 -0.32 0.12 16 43 H 0.16 0.36 8.06 -52.48 -0.42 -0.06 16 44 H 0.16 1.42 7.96 -52.49 -0.42 1.00 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 1.48 5.71 -51.93 -0.30 1.18 16 LS Contribution 371.23 15.07 5.59 5.59 Total: -1.00 -35.28 371.23 -8.00 -43.28 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.08 Total: 2.65 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -3.93 Total: -5.76 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.73 Total: -59.07 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.40 Total: -4.21 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.28 -8.00 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666139442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.913 kcal (2) G-P(sol) polarization free energy of solvation -35.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds