Wall clock time and date at job start Wed Apr 1 2020 02:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86796 * 119.99727 * 2 1 4 4 H 1.48497 * 109.47361 * 270.00079 * 3 2 1 5 5 H 1.48510 * 109.47149 * 29.99936 * 3 2 1 6 6 H 1.48499 * 109.46953 * 149.99752 * 3 2 1 7 7 C 1.38812 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00030 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99747 * 180.02562 * 7 2 1 10 10 C 1.46501 * 119.99803 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46834 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46832 * 179.97438 * 11 10 9 13 13 H 1.08993 * 109.50175 * 304.93733 * 12 11 10 14 14 C 1.53110 * 109.48492 * 184.85647 * 12 11 10 15 15 C 1.53042 * 109.49839 * 178.70375 * 14 12 11 16 16 C 1.53186 * 109.34100 * 61.34942 * 15 14 12 17 17 N 1.46927 * 108.77732 * 305.34718 * 16 15 14 18 18 C 1.34776 * 120.63149 * 233.63467 * 17 16 15 19 19 O 1.21561 * 120.00217 * 174.51184 * 18 17 16 20 20 C 1.47803 * 120.00157 * 354.51100 * 18 17 16 21 21 C 1.41154 * 118.94444 * 322.64356 * 20 18 17 22 22 C 1.35403 * 121.75841 * 179.97438 * 21 20 18 23 23 C 1.45297 * 119.09722 * 0.02562 * 22 21 20 24 24 N 1.30882 * 138.53512 * 179.97438 * 23 22 21 25 25 O 1.21487 * 109.06987 * 180.02562 * 24 23 22 26 26 N 1.21470 * 116.30393 * 0.02562 * 25 24 23 27 27 C 1.31069 * 109.07911 * 359.97438 * 26 25 24 28 28 C 1.37765 * 118.95016 * 142.37853 * 20 18 17 29 29 C 1.46925 * 118.73795 * 53.60725 * 17 16 15 30 30 H 0.96996 * 119.99858 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00120 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47126 * 60.00299 * 10 9 7 33 33 H 1.08999 * 109.47303 * 299.99841 * 10 9 7 34 34 H 1.09001 * 109.47464 * 60.00251 * 11 10 9 35 35 H 1.08996 * 109.47843 * 300.00123 * 11 10 9 36 36 H 1.08997 * 109.50698 * 58.67829 * 14 12 11 37 37 H 1.09001 * 109.44896 * 298.69248 * 14 12 11 38 38 H 1.08998 * 109.50088 * 301.37525 * 15 14 12 39 39 H 1.09001 * 109.49328 * 181.31274 * 15 14 12 40 40 H 1.09003 * 109.59258 * 65.13321 * 16 15 14 41 41 H 1.09000 * 109.59121 * 185.41401 * 16 15 14 42 42 H 1.07996 * 119.12701 * 0.02562 * 21 20 18 43 43 H 1.08005 * 120.45086 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.14495 * 359.97438 * 28 20 18 45 45 H 1.08999 * 109.58427 * 66.18157 * 29 17 16 46 46 H 1.09002 * 109.58924 * 186.60798 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1375 -0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4708 0.0000 11 6 5.6164 -2.1911 0.0000 12 6 6.3815 -3.5162 0.0006 13 1 6.0538 -4.1251 0.8431 14 6 7.8824 -3.2393 0.1228 15 6 8.6454 -4.5655 0.1560 16 6 8.3984 -5.3258 -1.1507 17 7 6.9495 -5.4689 -1.3479 18 6 6.4020 -6.6818 -1.5610 19 8 5.1938 -6.8009 -1.6233 20 6 7.2704 -7.8673 -1.7189 21 6 8.4920 -7.7316 -2.4130 22 6 9.3311 -8.7794 -2.5905 23 6 8.9634 -10.0781 -2.0524 24 7 9.4516 -11.2912 -1.9982 25 8 8.6759 -12.0046 -1.3939 26 7 7.6618 -11.4740 -0.9871 27 6 7.6754 -10.2078 -1.3254 28 6 6.8644 -9.0681 -1.1793 29 6 6.1088 -4.2646 -1.3079 30 1 -0.4850 0.8400 -0.0004 31 1 3.8647 -0.3620 0.0004 32 1 3.8493 -3.0421 -0.8902 33 1 3.8486 -3.0426 0.8897 34 1 5.8798 -1.6196 0.8900 35 1 5.8798 -1.6195 -0.8899 36 1 8.0767 -2.6854 1.0413 37 1 8.2137 -2.6510 -0.7329 38 1 8.2970 -5.1648 0.9972 39 1 9.7119 -4.3688 0.2665 40 1 8.8274 -4.7693 -1.9840 41 1 8.8606 -6.3113 -1.0931 42 1 8.7653 -6.7661 -2.8124 43 1 10.2606 -8.6518 -3.1254 44 1 5.9253 -9.1349 -0.6501 45 1 6.3511 -3.6216 -2.1540 46 1 5.0580 -4.5508 -1.3530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666139442.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:42 Heat of formation + Delta-G solvation = 100.574628 kcal Electronic energy + Delta-G solvation = -29324.192864 eV Core-core repulsion = 25218.904373 eV Total energy + Delta-G solvation = -4105.288491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -47.81510 -41.80528 -39.53370 -38.69160 -37.14540 -35.96047 -35.30630 -34.26883 -33.47719 -32.57646 -32.27410 -29.54400 -27.94975 -26.43096 -25.78683 -25.61485 -23.84804 -22.47963 -22.43448 -21.95319 -20.78080 -20.10099 -20.02295 -19.61909 -19.12929 -17.85820 -17.45268 -16.71672 -16.55403 -16.33199 -15.89831 -15.56837 -15.48885 -15.39834 -15.11833 -14.88757 -14.70153 -14.35755 -14.29914 -14.11730 -14.02593 -13.81281 -13.61235 -13.06869 -13.01155 -12.97929 -12.83512 -12.64163 -12.46479 -12.28770 -12.08122 -11.90230 -11.84476 -11.75942 -11.59480 -11.26454 -11.21091 -10.96174 -10.79145 -9.84526 -9.65759 -9.32620 -8.04815 -5.39849 -1.29088 -0.21973 0.65092 1.36445 1.37839 1.42483 1.49934 1.63951 2.00438 2.18066 2.24951 2.47698 2.54003 3.17550 3.25685 3.41534 3.50284 3.59393 3.79268 3.87767 3.90822 3.96975 4.03123 4.12123 4.32245 4.34133 4.43100 4.50291 4.51283 4.59131 4.68502 4.72508 4.77773 4.86652 4.89015 4.90354 4.94213 5.06146 5.15044 5.21784 5.25054 5.32254 5.39377 5.47493 5.54569 5.72646 6.19023 6.24628 6.92319 7.05756 7.25043 7.80634 8.02715 9.17002 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.002047 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.116057 B =13675.668198 C =14536.014487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.070 4.070 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.246 1.246 7 C -0.243 4.243 8 H 0.046 0.954 9 N -0.758 5.758 10 C 0.150 3.850 11 C -0.109 4.109 12 C -0.088 4.088 13 H 0.057 0.943 14 C -0.111 4.111 15 C -0.132 4.132 16 C 0.084 3.916 17 N -0.594 5.594 18 C 0.550 3.450 19 O -0.576 6.576 20 C -0.079 4.079 21 C -0.071 4.071 22 C -0.041 4.041 23 C 0.021 3.979 24 N -0.349 5.349 25 O 0.377 5.623 26 N -0.349 5.349 27 C 0.001 3.999 28 C -0.024 4.024 29 C 0.113 3.887 30 H 0.259 0.741 31 H 0.369 0.631 32 H 0.019 0.981 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.191 0.809 43 H 0.197 0.803 44 H 0.142 0.858 45 H 0.091 0.909 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.115 -15.973 -5.242 37.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.261 4.261 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.171 1.171 7 C -0.374 4.374 8 H 0.064 0.936 9 N -0.404 5.404 10 C 0.024 3.976 11 C -0.147 4.147 12 C -0.108 4.108 13 H 0.076 0.924 14 C -0.148 4.148 15 C -0.170 4.170 16 C -0.037 4.037 17 N -0.325 5.325 18 C 0.338 3.662 19 O -0.456 6.456 20 C -0.087 4.087 21 C -0.092 4.092 22 C -0.060 4.060 23 C -0.134 4.134 24 N -0.072 5.072 25 O 0.139 5.861 26 N -0.069 5.069 27 C -0.152 4.152 28 C -0.045 4.045 29 C -0.009 4.009 30 H 0.068 0.932 31 H 0.203 0.797 32 H 0.037 0.963 33 H 0.027 0.973 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.072 0.928 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.208 0.792 43 H 0.214 0.786 44 H 0.159 0.841 45 H 0.109 0.891 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 32.492 -17.283 -5.071 37.150 hybrid contribution -1.351 1.420 0.279 1.980 sum 31.141 -15.863 -4.791 35.275 Atomic orbital electron populations 1.69922 1.07394 1.26910 1.59396 1.25686 0.96321 1.01871 1.02239 0.85249 0.78641 0.78523 0.78376 1.19937 1.22141 1.17058 1.19032 0.83042 0.93327 1.41979 0.93569 1.42693 1.02368 1.04337 1.90983 1.20867 0.92226 0.87139 0.97376 1.21673 0.92072 0.97611 1.03341 1.21372 0.97399 0.95116 0.96905 0.92429 1.21600 0.91594 0.98025 1.03630 1.21943 1.02311 0.95816 0.96933 1.22674 0.77820 1.03473 0.99701 1.48105 1.09980 1.05364 1.69035 1.18558 0.87106 0.83759 0.76735 1.90866 1.16546 1.85796 1.52432 1.19721 0.96389 0.92238 1.00341 1.21467 0.90167 1.01473 0.96086 1.21352 1.02219 0.84027 0.98451 1.24636 0.92426 0.95323 1.01004 1.75184 1.15519 1.03224 1.13265 1.85416 1.18284 1.35737 1.46652 1.75272 1.05497 1.08758 1.17326 1.22741 0.98164 0.92264 1.01998 1.20085 0.98306 0.87680 0.98468 1.21775 0.95239 0.85311 0.98579 0.93231 0.79741 0.96315 0.97329 0.90803 0.90206 0.90982 0.89741 0.92801 0.87303 0.87170 0.87069 0.79164 0.78634 0.84051 0.89065 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.09 13.97 21.65 0.30 -64.79 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 45.64 27.74 68.60 1.90 47.54 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.25 -10.26 6.52 99.48 0.65 -9.61 16 7 C -0.24 -14.57 10.47 84.03 0.88 -13.69 16 8 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 9 N -0.76 -36.50 5.41 -343.45 -1.86 -38.36 16 10 C 0.15 5.87 6.02 86.38 0.52 6.39 16 11 C -0.11 -2.82 4.80 30.60 0.15 -2.68 16 12 C -0.09 -1.78 2.34 -10.69 -0.03 -1.80 16 13 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 14 C -0.11 -1.30 5.17 30.65 0.16 -1.14 16 15 C -0.13 -0.99 6.08 30.67 0.19 -0.81 16 16 C 0.08 0.53 4.74 86.36 0.41 0.94 16 17 N -0.59 -9.87 2.97 -822.36 -2.44 -12.31 16 18 C 0.55 12.10 7.30 86.77 0.63 12.73 16 19 O -0.58 -19.22 16.19 -3.91 -0.06 -19.28 16 20 C -0.08 -1.22 5.23 -20.14 -0.11 -1.32 16 21 C -0.07 -0.45 7.15 22.33 0.16 -0.30 16 22 C -0.04 -0.24 10.28 23.43 0.24 0.00 16 23 C 0.02 0.30 7.94 43.83 0.35 0.65 16 24 N -0.35 -5.70 12.28 -54.94 -0.67 -6.37 16 25 O 0.38 6.65 11.67 139.33 1.63 8.28 16 26 N -0.35 -7.05 12.29 -57.41 -0.71 -7.75 16 27 C 0.00 0.01 7.75 42.57 0.33 0.34 16 28 C -0.02 -0.45 9.59 22.75 0.22 -0.23 16 29 C 0.11 2.44 5.33 86.36 0.46 2.90 16 30 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 31 H 0.37 16.32 5.53 -92.71 -0.51 15.81 16 32 H 0.02 0.78 6.70 -2.39 -0.02 0.76 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.11 0.08 8.04 -2.39 -0.02 0.06 16 41 H 0.11 0.32 4.54 -2.39 -0.01 0.31 16 42 H 0.19 -0.07 6.11 -2.91 -0.02 -0.09 16 43 H 0.20 -0.34 8.06 -2.91 -0.02 -0.36 16 44 H 0.14 2.98 7.96 -2.91 -0.02 2.95 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 1.88 5.71 -2.39 -0.01 1.87 16 Total: -1.00 -83.97 371.23 3.57 -80.40 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.46 Total: 14.44 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 5.03 Total: -1.80 kcal Atomic # 7 Polarization: -124.20 SS G_CDS: -5.38 Total: -129.58 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 1.56 Total: -11.00 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.90 Total: 47.54 kcal Total: -83.97 3.57 -80.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666139442.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.976 kcal (2) G-P(sol) polarization free energy of solvation -83.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds