Wall clock time and date at job start Wed Apr 1 2020 02:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00134 * 2 1 4 4 H 1.48495 * 109.47397 * 240.00125 * 3 2 1 5 5 H 1.48501 * 109.46768 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99578 * 3 2 1 7 7 C 1.37876 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00102 * 172.23120 * 7 2 1 9 9 C 1.50700 * 119.99863 * 352.22587 * 7 2 1 10 10 C 1.53007 * 115.54854 * 84.78912 * 9 7 2 11 11 S 1.81389 * 109.47309 * 65.19124 * 10 9 7 12 12 O 1.42102 * 110.54545 * 62.18644 * 11 10 9 13 13 O 1.42101 * 110.54523 * 285.43298 * 11 10 9 14 14 N 1.65601 * 104.44936 * 173.81201 * 11 10 9 15 15 C 1.46498 * 120.00315 * 64.72563 * 14 11 10 16 16 C 1.52993 * 109.47472 * 165.27589 * 15 14 11 17 17 C 1.53001 * 109.47280 * 179.97438 * 16 15 14 18 18 N 1.46501 * 109.47246 * 179.97438 * 17 16 15 19 19 C 1.34776 * 119.99881 * 179.97438 * 18 17 16 20 20 O 1.21282 * 120.00041 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99912 * 180.02562 * 19 18 17 22 22 C 1.53776 * 113.61296 * 279.13839 * 21 19 18 23 23 C 1.53955 * 87.02077 * 220.04960 * 22 21 19 24 24 C 1.53777 * 113.61212 * 181.53042 * 21 19 18 25 25 C 1.53002 * 117.49864 * 230.45136 * 9 7 2 26 26 C 1.52995 * 117.50288 * 299.11504 * 9 7 2 27 27 H 0.97003 * 120.00122 * 5.02948 * 1 2 3 28 28 H 1.09006 * 109.46528 * 305.19109 * 10 9 7 29 29 H 1.09002 * 109.46643 * 185.19570 * 10 9 7 30 30 H 0.97001 * 119.99933 * 244.99699 * 14 11 10 31 31 H 1.08997 * 109.46924 * 285.28107 * 15 14 11 32 32 H 1.08999 * 109.46737 * 45.27163 * 15 14 11 33 33 H 1.09004 * 109.47369 * 299.99805 * 16 15 14 34 34 H 1.08999 * 109.47488 * 60.00034 * 16 15 14 35 35 H 1.08997 * 109.47101 * 300.00508 * 17 16 15 36 36 H 1.09006 * 109.47173 * 60.00202 * 17 16 15 37 37 H 0.96998 * 120.00246 * 359.97438 * 18 17 16 38 38 H 1.08996 * 112.85012 * 50.33446 * 21 19 18 39 39 H 1.09003 * 113.62103 * 334.56976 * 22 21 19 40 40 H 1.09001 * 113.61459 * 105.47466 * 22 21 19 41 41 H 1.09007 * 113.53541 * 270.81737 * 23 22 21 42 42 H 1.09000 * 113.67120 * 139.93959 * 23 22 21 43 43 H 1.08997 * 113.61614 * 254.52951 * 24 21 19 44 44 H 1.09000 * 113.61975 * 25.35528 * 24 21 19 45 45 H 1.08996 * 117.49740 * 215.00232 * 25 9 7 46 46 H 1.09000 * 117.49983 * 0.03008 * 25 9 7 47 47 H 1.09000 * 117.49768 * 359.97438 * 26 9 7 48 48 H 1.09001 * 117.49907 * 144.97353 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0771 -1.1984 -0.1259 9 6 1.2614 -2.4930 0.1777 10 6 0.6669 -3.0925 -1.0984 11 16 2.0070 -3.5643 -2.2261 12 8 2.8267 -4.5639 -1.6360 13 8 2.5776 -2.4126 -2.8321 14 7 1.2436 -4.3449 -3.4713 15 6 0.3129 -3.6129 -4.3339 16 6 0.0345 -4.4325 -5.5954 17 6 -0.9380 -3.6682 -6.4959 18 7 -1.2040 -4.4528 -7.7042 19 6 -2.0388 -3.9745 -8.6480 20 8 -2.5694 -2.8944 -8.4973 21 6 -2.3129 -4.7818 -9.8907 22 6 -1.2157 -4.6570 -10.9609 23 6 -2.3483 -4.6215 -12.0030 24 6 -3.2554 -4.0823 -10.8843 25 6 1.7806 -3.4648 1.2393 26 6 0.4827 -2.6897 1.4798 27 1 -0.4850 0.8368 -0.0736 28 1 0.0274 -2.3544 -1.5827 29 1 0.0776 -3.9738 -0.8454 30 1 1.4097 -5.2878 -3.6270 31 1 -0.6209 -3.4419 -3.7982 32 1 0.7525 -2.6552 -4.6124 33 1 0.9684 -4.6034 -6.1311 34 1 -0.4051 -5.3902 -5.3169 35 1 -1.8717 -3.4976 -5.9601 36 1 -0.4988 -2.7103 -6.7746 37 1 -0.7794 -5.3165 -7.8249 38 1 -2.5949 -5.8119 -9.6726 39 1 -0.6495 -3.7275 -10.8995 40 1 -0.5782 -5.5378 -11.0374 41 1 -2.6393 -5.6082 -12.3635 42 1 -2.1787 -3.9082 -12.8096 43 1 -4.2621 -4.4998 -10.8991 44 1 -3.2490 -2.9955 -10.8010 45 1 1.6985 -4.5311 1.0287 46 1 2.6593 -3.1644 1.8099 47 1 0.5082 -1.8796 2.2087 48 1 -0.4534 -3.2456 1.4274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667775938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:14 Heat of formation + Delta-G solvation = -80.031032 kcal Electronic energy + Delta-G solvation = -27754.846540 eV Core-core repulsion = 23744.877601 eV Total energy + Delta-G solvation = -4009.968940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53519 -37.97720 -36.76938 -36.61079 -36.17883 -35.09914 -34.59074 -32.04100 -30.99145 -28.17274 -27.40221 -26.04595 -25.45587 -24.72903 -22.05276 -21.22736 -21.21686 -19.79578 -19.62418 -18.66900 -17.73568 -16.85037 -16.66377 -16.39773 -16.11734 -15.80605 -15.51656 -15.11067 -14.77388 -14.61490 -14.53960 -14.13542 -13.72980 -13.34192 -13.14862 -13.03486 -12.87024 -12.69061 -12.34570 -11.97380 -11.84273 -11.79887 -11.59236 -11.42435 -11.27047 -11.20223 -11.11111 -11.01615 -10.96763 -10.90099 -10.82652 -10.59784 -10.46462 -10.12507 -9.93156 -9.73569 -9.33893 -9.24010 -8.96661 -8.56117 -8.09848 -6.13717 -4.24409 1.05807 2.37392 2.88143 3.33293 3.35584 3.41933 3.44970 4.07627 4.16047 4.30729 4.37839 4.38641 4.50357 4.62446 4.74481 4.76930 4.86323 5.04163 5.11860 5.14555 5.21010 5.24448 5.35835 5.35908 5.43777 5.45293 5.51821 5.55755 5.64462 5.68408 5.82754 5.90843 5.96859 5.99122 6.12471 6.17956 6.26009 6.36396 6.60461 6.71366 6.97782 7.18523 7.22190 7.26628 7.38573 7.80660 7.97823 8.20186 8.80877 9.46854 10.93901 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015399 B = 0.002167 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.846511 B =12919.199955 C =13789.858384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.082 3.918 3 Si 0.891 3.109 4 H -0.270 1.270 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.554 4.554 11 S 2.608 3.392 12 O -0.975 6.975 13 O -0.949 6.949 14 N -1.134 6.134 15 C 0.118 3.882 16 C -0.136 4.136 17 C 0.115 3.885 18 N -0.729 5.729 19 C 0.519 3.481 20 O -0.537 6.537 21 C -0.140 4.140 22 C -0.124 4.124 23 C -0.143 4.143 24 C -0.118 4.118 25 C -0.208 4.208 26 C -0.141 4.141 27 H 0.264 0.736 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.408 0.592 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 -13.574 -18.902 23.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.040 3.960 10 C -0.687 4.687 11 S 2.705 3.295 12 O -0.965 6.965 13 O -0.939 6.939 14 N -0.890 5.890 15 C -0.009 4.009 16 C -0.175 4.175 17 C -0.009 4.009 18 N -0.381 5.381 19 C 0.305 3.695 20 O -0.413 6.413 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.180 4.180 24 C -0.156 4.156 25 C -0.245 4.245 26 C -0.181 4.181 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.117 0.883 30 H 0.241 0.759 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.423 -12.293 -18.666 22.999 hybrid contribution -0.175 -0.016 0.134 0.221 sum -5.598 -12.309 -18.532 22.941 Atomic orbital electron populations 1.69963 1.06035 1.27341 1.47662 1.24953 0.94813 0.99229 0.93309 0.86650 0.79916 0.82418 0.79250 1.19454 1.21128 1.19904 1.20476 0.93658 0.88579 1.52641 0.91392 1.18283 0.99002 0.94348 0.84327 1.29977 1.16524 1.08477 1.13714 1.05119 0.76420 0.73716 0.74228 1.93505 1.65511 1.59526 1.77963 1.93539 1.74899 1.50965 1.74493 1.55983 1.62189 1.22448 1.48418 1.21106 0.93375 0.95835 0.90565 1.21952 0.99959 0.99637 0.95982 1.21347 0.99501 0.95111 0.84922 1.46025 1.48174 1.23300 1.20624 1.20558 0.78290 0.86588 0.84018 1.90721 1.50174 1.21981 1.78459 1.22817 1.00402 1.00689 0.92187 1.22865 0.95937 1.02977 0.94448 1.22869 0.96487 1.01756 0.96902 1.22805 0.97553 1.01774 0.93493 1.23196 0.98673 0.96015 1.06651 1.22553 0.92551 1.01033 1.01924 0.92642 0.84840 0.88278 0.75938 0.91412 0.89705 0.90388 0.90612 0.90813 0.90766 0.76568 0.86954 0.89583 0.90616 0.89882 0.90900 0.90992 0.88640 0.90693 0.89534 0.89591 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.98 12.98 55.43 0.72 -23.26 16 2 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 3 Si 0.89 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.04 8.18 -34.44 -0.28 -14.32 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C 0.04 1.03 1.32 -155.66 -0.21 0.83 16 10 C -0.55 -11.30 5.92 37.16 0.22 -11.08 16 11 S 2.61 50.67 5.19 -107.50 -0.56 50.11 16 12 O -0.97 -20.74 18.08 -57.54 -1.04 -21.78 16 13 O -0.95 -22.11 17.18 -57.54 -0.99 -23.09 16 14 N -1.13 -15.39 5.89 -10.62 -0.06 -15.45 16 15 C 0.12 1.41 6.12 -4.05 -0.02 1.39 16 16 C -0.14 -1.14 5.47 -26.73 -0.15 -1.28 16 17 C 0.12 1.09 5.67 -4.04 -0.02 1.06 16 18 N -0.73 -5.83 5.56 -60.29 -0.33 -6.16 16 19 C 0.52 5.22 7.35 -10.98 -0.08 5.14 16 20 O -0.54 -7.83 15.91 5.56 0.09 -7.74 16 21 C -0.14 -0.93 4.14 -90.96 -0.38 -1.31 16 22 C -0.12 -0.69 7.64 -25.83 -0.20 -0.89 16 23 C -0.14 -0.75 8.09 -25.83 -0.21 -0.95 16 24 C -0.12 -0.84 7.40 -25.92 -0.19 -1.03 16 25 C -0.21 -4.53 9.96 -26.69 -0.27 -4.80 16 26 C -0.14 -3.20 9.49 -26.69 -0.25 -3.45 16 27 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 28 H 0.13 2.82 8.14 -51.92 -0.42 2.40 16 29 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 30 H 0.41 4.46 8.62 -34.47 -0.30 4.16 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.13 7.71 -51.93 -0.40 0.73 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.40 1.99 8.47 -40.82 -0.35 1.65 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.87 7.45 -51.93 -0.39 0.48 16 45 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 47 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 48 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 410.50 15.07 6.19 6.19 Total: -1.00 -35.45 410.50 -11.30 -46.75 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.16 Total: 6.66 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: -2.13 Total: -28.58 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.32 Total: -44.88 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.94 Total: -52.62 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 50.67 SS G_CDS: -0.56 Total: 50.11 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.45 -11.30 -46.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667775938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.282 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds