Wall clock time and date at job start Wed Apr 1 2020 02:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48505 * 109.46896 * 240.00129 * 3 2 1 5 5 H 1.48501 * 109.47246 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47334 * 120.00229 * 3 2 1 7 7 C 1.38808 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99992 * 145.97817 * 7 2 1 9 9 N 1.36934 * 120.00062 * 325.98205 * 7 2 1 10 10 C 1.47428 * 125.64941 * 348.09168 * 9 7 2 11 11 C 1.54909 * 104.83177 * 204.09213 * 10 9 7 12 12 C 1.55156 * 101.58520 * 322.99367 * 11 10 9 13 13 O 1.42898 * 110.71754 * 276.95875 * 12 11 10 14 14 C 1.52995 * 110.72190 * 153.86355 * 12 11 10 15 15 N 1.46501 * 109.47435 * 185.00036 * 14 12 11 16 16 C 1.34774 * 119.99960 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00286 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99702 * 179.97438 * 16 15 14 19 19 C 1.50703 * 109.47203 * 179.97438 * 18 16 15 20 20 C 1.39682 * 119.09434 * 269.73546 * 19 18 16 21 21 C 1.35651 * 121.72699 * 179.72452 * 20 19 18 22 22 C 1.41129 * 119.53557 * 0.51450 * 21 20 19 23 23 C 1.38239 * 134.82126 * 179.76399 * 22 21 20 24 24 N 1.33981 * 107.91026 * 180.02562 * 23 22 21 25 25 H 0.97003 * 125.01901 * 180.02562 * 24 23 22 26 26 N 1.39953 * 109.95512 * 0.02562 * 24 23 22 27 27 C 1.32051 * 108.96290 * 359.97438 * 26 24 23 28 28 C 1.35638 * 119.08874 * 90.00260 * 19 18 16 29 29 C 1.47022 * 125.64790 * 167.78848 * 9 7 2 30 30 H 0.97004 * 119.99808 * 174.25644 * 1 2 3 31 31 H 1.08995 * 110.36440 * 322.93608 * 10 9 7 32 32 H 1.09004 * 110.36476 * 85.25907 * 10 9 7 33 33 H 1.09008 * 111.00348 * 81.06686 * 11 10 9 34 34 H 1.09000 * 111.00478 * 204.91821 * 11 10 9 35 35 H 0.96701 * 113.99984 * 179.97438 * 13 12 11 36 36 H 1.09001 * 109.47435 * 305.00101 * 14 12 11 37 37 H 1.09008 * 109.47052 * 64.99670 * 14 12 11 38 38 H 0.96998 * 119.99392 * 359.97438 * 15 14 12 39 39 H 1.08997 * 109.47644 * 300.00024 * 18 16 15 40 40 H 1.09004 * 109.46920 * 60.00089 * 18 16 15 41 41 H 1.08004 * 119.13283 * 359.97438 * 20 19 18 42 42 H 1.08003 * 120.23191 * 180.28300 * 21 20 19 43 43 H 1.08007 * 126.04127 * 0.02562 * 23 22 21 44 44 H 1.07998 * 120.20034 * 0.02562 * 28 19 18 45 45 H 1.09001 * 109.88532 * 298.39571 * 29 9 7 46 46 H 1.09005 * 109.88581 * 59.55849 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1038 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 2.9516 -1.2823 -0.5228 9 7 1.5014 -2.2862 0.6645 10 6 0.3735 -2.2609 1.6136 11 6 0.5848 -3.5038 2.5137 12 6 1.1334 -4.5370 1.4946 13 8 0.0635 -5.1628 0.7834 14 6 1.9987 -5.5845 2.1981 15 7 2.5980 -6.4734 1.1997 16 6 3.4046 -7.4797 1.5911 17 8 3.6346 -7.6491 2.7697 18 6 4.0206 -8.3945 0.5640 19 6 4.8730 -9.4261 1.2570 20 6 6.2238 -9.1510 1.4821 21 6 7.0383 -10.0386 2.1057 22 6 6.5184 -11.2794 2.5321 23 6 7.0418 -12.3867 3.1731 24 7 6.0561 -13.2824 3.3192 25 1 6.1515 -14.1515 3.7394 26 7 4.8687 -12.7787 2.7760 27 6 5.0972 -11.5727 2.2891 28 6 4.3086 -10.5985 1.6400 29 6 1.9853 -3.6693 0.5441 30 1 -0.4850 -0.8359 -0.0841 31 1 0.4014 -1.3501 2.2116 32 1 -0.5736 -2.3361 1.0793 33 1 1.3164 -3.3000 3.2957 34 1 -0.3591 -3.8409 2.9422 35 1 0.3532 -5.8174 0.1333 36 1 2.7878 -5.0855 2.7606 37 1 1.3801 -6.1683 2.8798 38 1 2.4137 -6.3381 0.2570 39 1 3.2313 -8.8932 0.0016 40 1 4.6394 -7.8109 -0.1177 41 1 6.6294 -8.2051 1.1547 42 1 8.0783 -9.7989 2.2714 43 1 8.0644 -12.5083 3.4987 44 1 3.2623 -10.7859 1.4485 45 1 1.8673 -4.0154 -0.4827 46 1 3.0339 -3.7220 0.8370 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672040465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:38:05 Heat of formation + Delta-G solvation = 34.772276 kcal Electronic energy + Delta-G solvation = -29019.908981 eV Core-core repulsion = 24911.767086 eV Total energy + Delta-G solvation = -4108.141895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54192 -40.07866 -38.75830 -37.47282 -35.36468 -34.18864 -32.77861 -32.32391 -32.17358 -29.71773 -29.14725 -28.86274 -27.71818 -25.46655 -24.04155 -23.34142 -21.82710 -21.01771 -20.75520 -20.07637 -20.01116 -18.41224 -17.73033 -17.44340 -17.03313 -16.44982 -15.98077 -15.68105 -15.27647 -15.14216 -14.81812 -14.55512 -14.20983 -14.12864 -13.87534 -13.68693 -13.34628 -13.18094 -13.11049 -12.91927 -12.45563 -12.18350 -11.99943 -11.89436 -11.81792 -11.75837 -11.03416 -10.77463 -10.62591 -10.60362 -10.58147 -10.48216 -10.39562 -10.02797 -9.90474 -9.74293 -9.53628 -9.12239 -8.90293 -8.34238 -7.88632 -6.98336 -6.15766 -3.09349 0.33835 1.53048 2.17188 2.36642 2.59298 3.06831 3.50444 3.55904 3.65759 3.73389 3.95116 4.25586 4.34110 4.50807 4.53652 4.72068 4.76793 4.89102 4.89668 4.98414 5.06752 5.21901 5.22501 5.24780 5.26690 5.36787 5.40587 5.52620 5.75698 5.86435 5.90663 6.00873 6.17343 6.19278 6.25038 6.27311 6.33171 6.42367 6.44101 6.48981 6.61614 6.72168 6.96074 7.08973 7.28054 7.38106 7.76258 7.81897 8.15866 8.47180 8.99357 9.80861 10.35947 11.18748 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024449 B = 0.001909 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.977060 B =14664.390456 C =15314.759106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.021 4.021 3 Si 1.057 2.943 4 H -0.293 1.293 5 H -0.286 1.286 6 H -0.294 1.294 7 C -0.347 4.347 8 H 0.066 0.934 9 N -0.598 5.598 10 C 0.148 3.852 11 C -0.119 4.119 12 C 0.106 3.894 13 O -0.544 6.544 14 C 0.105 3.895 15 N -0.729 5.729 16 C 0.515 3.485 17 O -0.530 6.530 18 C -0.107 4.107 19 C -0.018 4.018 20 C -0.135 4.135 21 C -0.046 4.046 22 C -0.206 4.206 23 C 0.079 3.921 24 N -0.428 5.428 25 H 0.443 0.557 26 N -0.308 5.308 27 C 0.109 3.891 28 C -0.093 4.093 29 C 0.118 3.882 30 H 0.270 0.730 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.366 0.634 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.399 0.601 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.187 0.813 44 H 0.127 0.873 45 H 0.024 0.976 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 -25.633 3.579 29.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.224 4.224 3 Si 0.886 3.114 4 H -0.220 1.220 5 H -0.211 1.211 6 H -0.221 1.221 7 C -0.474 4.474 8 H 0.084 0.916 9 N -0.325 5.325 10 C 0.023 3.977 11 C -0.158 4.158 12 C 0.064 3.936 13 O -0.348 6.348 14 C -0.019 4.019 15 N -0.382 5.382 16 C 0.301 3.699 17 O -0.406 6.406 18 C -0.147 4.147 19 C -0.023 4.023 20 C -0.155 4.155 21 C -0.066 4.066 22 C -0.215 4.215 23 C -0.078 4.078 24 N -0.129 5.129 25 H 0.287 0.713 26 N -0.137 5.137 27 C -0.044 4.044 28 C -0.114 4.114 29 C -0.009 4.009 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.212 0.788 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.233 0.767 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.204 0.796 44 H 0.145 0.855 45 H 0.042 0.958 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 12.211 -24.548 5.024 27.874 hybrid contribution 1.194 -1.853 -0.836 2.357 sum 13.405 -26.401 4.188 29.904 Atomic orbital electron populations 1.70782 1.06874 1.30231 1.46614 1.25668 0.96167 1.00932 0.99603 0.83648 0.75103 0.76378 0.76231 1.22039 1.21125 1.22113 1.19657 1.04042 0.89590 1.34124 0.91580 1.44513 1.37563 1.01852 1.48580 1.21501 0.91389 0.94590 0.90267 1.22823 1.01121 0.95271 0.96588 1.22530 0.86913 0.90959 0.93175 1.86627 1.33561 1.58617 1.56011 1.22027 0.96982 0.91449 0.91400 1.45986 1.49880 1.31632 1.10727 1.20449 0.78627 0.80859 0.89952 1.90745 1.60065 1.71419 1.18326 1.20778 1.00186 0.96168 0.97574 1.18750 0.93695 0.93086 0.96755 1.20401 0.92995 0.99892 1.02189 1.20163 0.99218 0.91038 0.96177 1.19662 0.94423 0.97372 1.10084 1.22685 0.95147 0.90127 0.99856 1.46306 1.06795 1.16495 1.43266 0.71338 1.77680 1.02239 1.12113 1.21671 1.20855 0.93650 0.92410 0.97526 1.19625 0.98755 0.91959 1.01041 1.21922 0.95951 0.87158 0.95853 0.91943 0.92795 0.95233 0.90112 0.90578 0.78755 0.90280 0.90713 0.76665 0.87587 0.87371 0.85913 0.85738 0.79566 0.85548 0.95780 0.94912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.41 12.87 55.49 0.71 -26.69 16 2 C -0.02 -0.60 4.95 -17.43 -0.09 -0.69 16 3 Si 1.06 25.27 30.03 -169.99 -5.10 20.17 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.35 -9.78 9.97 -15.06 -0.15 -9.93 16 8 H 0.07 1.85 8.02 -52.48 -0.42 1.43 16 9 N -0.60 -15.05 3.33 -170.06 -0.57 -15.62 16 10 C 0.15 3.48 5.33 -2.53 -0.01 3.46 16 11 C -0.12 -2.16 6.26 -24.58 -0.15 -2.32 16 12 C 0.11 1.73 0.93 -88.78 -0.08 1.65 16 13 O -0.54 -8.68 13.10 -35.23 -0.46 -9.14 16 14 C 0.11 1.48 4.74 -4.04 -0.02 1.46 16 15 N -0.73 -8.28 5.13 -60.29 -0.31 -8.58 16 16 C 0.52 6.26 7.82 -10.99 -0.09 6.18 16 17 O -0.53 -8.74 16.03 5.56 0.09 -8.65 16 18 C -0.11 -0.91 5.78 -29.03 -0.17 -1.08 16 19 C -0.02 -0.19 4.33 -105.01 -0.45 -0.64 16 20 C -0.14 -1.34 9.51 -39.97 -0.38 -1.72 16 21 C -0.05 -0.42 10.09 -39.41 -0.40 -0.82 16 22 C -0.21 -2.05 6.33 -105.19 -0.67 -2.72 16 23 C 0.08 0.51 12.07 -16.61 -0.20 0.31 16 24 N -0.43 -3.06 7.18 30.84 0.22 -2.84 16 25 H 0.44 1.38 8.96 -182.71 -1.64 -0.26 16 26 N -0.31 -3.61 12.70 33.25 0.42 -3.18 16 27 C 0.11 1.33 7.49 -83.06 -0.62 0.71 16 28 C -0.09 -1.07 9.65 -39.41 -0.38 -1.45 16 29 C 0.12 2.32 6.04 -3.06 -0.02 2.30 16 30 H 0.27 8.27 6.45 -40.82 -0.26 8.00 16 31 H 0.05 1.37 7.82 -51.93 -0.41 0.97 16 32 H 0.03 0.76 7.03 -51.93 -0.36 0.39 16 33 H 0.08 1.37 8.04 -51.92 -0.42 0.95 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.37 4.25 8.05 45.56 0.37 4.61 16 36 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 37 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 38 H 0.40 3.59 7.37 -40.82 -0.30 3.29 16 39 H 0.11 0.65 8.06 -51.93 -0.42 0.23 16 40 H 0.11 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 42 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 43 H 0.19 0.34 8.06 -52.48 -0.42 -0.08 16 44 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.02 0.48 8.07 -51.93 -0.42 0.06 16 46 H 0.03 0.64 7.82 -51.93 -0.41 0.24 16 LS Contribution 383.40 15.07 5.78 5.78 Total: -1.00 -39.10 383.40 -9.96 -49.06 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -6.86 Total: 5.00 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -3.88 Total: -5.30 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.48 Total: -56.92 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.37 Total: -17.79 kcal Atomic # 14 Polarization: 25.27 SS G_CDS: -5.10 Total: 20.17 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.10 -9.96 -49.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672040465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.832 kcal (2) G-P(sol) polarization free energy of solvation -39.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds