Wall clock time and date at job start Wed Apr 1 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48502 * 109.46936 * 275.00218 * 3 2 1 5 5 H 1.48498 * 109.47246 * 35.00021 * 3 2 1 6 6 H 1.48503 * 109.47021 * 155.00497 * 3 2 1 7 7 C 1.38809 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99800 * 185.08694 * 7 2 1 9 9 N 1.36937 * 120.00074 * 5.08581 * 7 2 1 10 10 C 1.47589 * 134.48959 * 184.93792 * 9 7 2 11 11 C 1.53952 * 86.11202 * 155.35546 * 10 9 7 12 12 C 1.52993 * 113.74451 * 269.15237 * 11 10 9 13 13 C 1.53003 * 109.47384 * 172.51213 * 12 11 10 14 14 O 1.42904 * 109.47152 * 175.19103 * 13 12 11 15 15 N 1.46499 * 113.73703 * 137.95244 * 11 10 9 16 16 C 1.34774 * 120.00034 * 74.86162 * 15 11 10 17 17 O 1.21279 * 119.99909 * 355.07597 * 16 15 11 18 18 C 1.50703 * 120.00153 * 175.07609 * 16 15 11 19 19 C 1.50697 * 109.47367 * 179.97438 * 18 16 15 20 20 C 1.39683 * 119.13920 * 89.99955 * 19 18 16 21 21 C 1.35631 * 121.81744 * 180.02562 * 20 19 18 22 22 C 1.41147 * 119.59787 * 359.97438 * 21 20 19 23 23 N 1.32066 * 134.67876 * 180.02562 * 22 21 20 24 24 N 1.39951 * 108.95842 * 179.97438 * 23 22 21 25 25 H 0.97002 * 125.02386 * 180.02562 * 24 23 22 26 26 C 1.33986 * 109.95937 * 359.97438 * 24 23 22 27 27 C 1.38244 * 107.90771 * 0.02562 * 26 24 23 28 28 C 1.35663 * 119.13567 * 269.73300 * 19 18 16 29 29 C 1.47812 * 134.45699 * 4.80054 * 9 7 2 30 30 H 0.97005 * 120.00128 * 359.97438 * 1 2 3 31 31 H 1.08999 * 113.76971 * 41.05992 * 10 9 7 32 32 H 1.08992 * 113.87090 * 269.67089 * 10 9 7 33 33 H 1.09004 * 109.47565 * 292.51329 * 12 11 10 34 34 H 1.09004 * 109.46960 * 52.50968 * 12 11 10 35 35 H 1.09005 * 109.46758 * 295.19040 * 13 12 11 36 36 H 1.08992 * 109.47335 * 55.18757 * 13 12 11 37 37 H 0.96703 * 113.99594 * 180.02562 * 14 13 12 38 38 H 0.97001 * 120.00091 * 254.85498 * 15 11 10 39 39 H 1.09005 * 109.46923 * 60.00122 * 18 16 15 40 40 H 1.08993 * 109.47214 * 300.00217 * 18 16 15 41 41 H 1.08001 * 119.08751 * 0.02562 * 20 19 18 42 42 H 1.07998 * 120.19896 * 180.02562 * 21 20 19 43 43 H 1.07999 * 126.04879 * 180.02562 * 26 24 23 44 44 H 1.08000 * 120.23369 * 359.92620 * 28 19 18 45 45 H 1.09002 * 113.76271 * 90.38523 * 29 9 7 46 46 H 1.08998 * 113.83690 * 318.92177 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3919 2.1074 -1.3948 5 1 1.5045 2.6199 0.8030 6 1 3.5966 1.4119 0.5916 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2040 0.0824 9 7 1.3295 -2.3857 -0.1062 10 6 1.7151 -3.8092 -0.0495 11 6 0.2602 -4.0781 0.3760 12 6 0.0467 -4.0536 1.8907 13 6 -1.4497 -4.1442 2.1965 14 8 -1.6425 -4.2342 3.6096 15 7 -0.3342 -5.2533 -0.2657 16 6 0.0197 -6.4907 0.1344 17 8 0.8944 -6.6334 0.9622 18 6 -0.6716 -7.6971 -0.4470 19 6 -0.0946 -8.9489 0.1622 20 6 -0.6675 -9.4650 1.3268 21 6 -0.1917 -10.5876 1.9209 22 6 0.9121 -11.2614 1.3553 23 7 1.5998 -12.3442 1.6698 24 7 2.6103 -12.5328 0.7201 25 1 3.2523 -13.2599 0.7273 26 6 2.5592 -11.5614 -0.2012 27 6 1.5146 -10.7178 0.1280 28 6 0.9643 -9.5480 -0.4381 29 6 -0.0870 -2.7497 -0.3204 30 1 -0.4850 0.8401 0.0004 31 1 2.4481 -4.0352 0.7249 32 1 1.9753 -4.2346 -1.0186 33 1 0.5621 -4.9004 2.3441 34 1 0.4455 -3.1249 2.2989 35 1 -1.9525 -3.2546 1.8171 36 1 -1.8658 -5.0295 1.7159 37 1 -2.5699 -4.2952 3.8769 38 1 -0.9826 -5.1409 -0.9784 39 1 -0.5220 -7.7165 -1.5265 40 1 -1.7382 -7.6448 -0.2289 41 1 -1.5126 -8.9562 1.7663 42 1 -0.6550 -10.9641 2.8209 43 1 3.2176 -11.4559 -1.0508 44 1 1.3849 -9.1311 -1.3412 45 1 -0.3577 -2.8617 -1.3703 46 1 -0.7899 -2.1315 0.2380 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675085999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:41 Heat of formation + Delta-G solvation = 37.106012 kcal Electronic energy + Delta-G solvation = -29822.747088 eV Core-core repulsion = 25714.706392 eV Total energy + Delta-G solvation = -4108.040697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14758 -41.37402 -39.54314 -38.01229 -37.66319 -35.14580 -33.87383 -33.47734 -32.16689 -31.70365 -30.91532 -29.04235 -27.81462 -26.78392 -25.21173 -24.68348 -23.33565 -22.48404 -21.60100 -21.13104 -20.09128 -19.05730 -18.75482 -18.38016 -17.92491 -17.58783 -17.03874 -16.69730 -16.38327 -16.12300 -15.83126 -15.76987 -15.60993 -15.20133 -14.88479 -14.83743 -14.68300 -14.34526 -13.92530 -13.70894 -13.27552 -13.23052 -12.97890 -12.83014 -12.68608 -12.66018 -12.55141 -12.49939 -12.24751 -12.19471 -12.00447 -11.72391 -11.37923 -11.24131 -11.21116 -10.94496 -10.84469 -10.45313 -9.89042 -9.62804 -8.91134 -8.47324 -7.90095 -5.24296 -0.23904 0.87384 1.46755 1.47842 1.53503 1.56815 1.90004 1.91818 2.28898 2.52663 2.98514 3.21247 3.28799 3.35928 3.44405 3.70986 3.81785 3.92651 4.16610 4.20080 4.27962 4.31090 4.37088 4.42412 4.53439 4.54977 4.64601 4.71352 4.76069 4.77418 4.81910 4.89444 4.90450 5.11731 5.18508 5.25079 5.29238 5.30917 5.52341 5.52503 5.55902 5.81076 5.83303 5.95420 6.02546 6.32164 6.64634 6.84184 6.92678 6.95129 7.55092 7.59205 8.53277 9.25028 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.002447 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.122924 B =11439.821406 C =12226.630371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.058 4.058 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.236 4.236 8 H 0.076 0.924 9 N -0.633 5.633 10 C 0.121 3.879 11 C 0.161 3.839 12 C -0.089 4.089 13 C 0.094 3.906 14 O -0.594 6.594 15 N -0.708 5.708 16 C 0.510 3.490 17 O -0.570 6.570 18 C -0.086 4.086 19 C -0.118 4.118 20 C -0.054 4.054 21 C -0.138 4.138 22 C 0.082 3.918 23 N -0.357 5.357 24 N -0.418 5.418 25 H 0.458 0.542 26 C 0.110 3.890 27 C -0.238 4.238 28 C -0.029 4.029 29 C 0.162 3.838 30 H 0.251 0.749 31 H 0.031 0.969 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.396 0.604 38 H 0.416 0.584 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.129 0.871 43 H 0.236 0.764 44 H 0.143 0.857 45 H 0.039 0.961 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.197 -23.885 -5.197 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.252 4.252 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.198 1.198 7 C -0.364 4.364 8 H 0.094 0.906 9 N -0.360 5.360 10 C -0.005 4.005 11 C 0.073 3.927 12 C -0.128 4.128 13 C 0.016 3.984 14 O -0.402 6.402 15 N -0.362 5.362 16 C 0.298 3.702 17 O -0.448 6.448 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.076 4.076 21 C -0.159 4.159 22 C -0.070 4.070 23 N -0.187 5.187 24 N -0.119 5.119 25 H 0.306 0.694 26 C -0.049 4.049 27 C -0.248 4.248 28 C -0.049 4.049 29 C 0.037 3.963 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.245 0.755 38 H 0.253 0.747 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.147 0.853 43 H 0.253 0.747 44 H 0.161 0.839 45 H 0.057 0.943 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.771 -24.639 -3.694 25.068 hybrid contribution 0.105 1.510 -0.618 1.635 sum -2.666 -23.130 -4.312 23.679 Atomic orbital electron populations 1.69940 1.06050 1.25686 1.57495 1.25524 0.96630 1.00426 1.02631 0.85103 0.77732 0.79383 0.77361 1.21163 1.21871 1.19839 1.19279 0.90814 0.83271 1.43033 0.90606 1.45929 1.05780 1.00149 1.84107 1.22962 0.95739 0.84088 0.97704 1.22056 0.93482 0.85110 0.92046 1.21165 0.96713 1.01244 0.93689 1.21951 0.95274 1.00078 0.81053 1.86450 1.33068 1.97322 1.23393 1.45992 1.46232 1.04307 1.39645 1.21324 0.82603 0.84735 0.81524 1.90717 1.32619 1.86569 1.34863 1.20695 1.01831 0.87295 1.02729 1.18868 0.98792 0.97214 0.97145 1.20767 0.98978 0.93805 0.94065 1.19984 0.96482 0.97588 1.01888 1.21279 0.96754 0.93398 0.95600 1.77561 1.05409 1.21217 1.14508 1.46342 1.25082 1.22544 1.17949 0.69409 1.23453 0.97781 0.88161 0.95505 1.20008 1.02375 1.02140 1.00276 1.20355 0.93460 0.91926 0.99175 1.22611 0.87920 0.89205 0.96590 0.94033 0.95046 0.93314 0.91722 0.93838 0.93769 0.91666 0.75480 0.74658 0.85132 0.85238 0.84310 0.85275 0.74739 0.83928 0.94322 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.03 11.29 21.65 0.24 -54.78 16 2 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 3 Si 0.98 45.76 29.56 68.60 2.03 47.78 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.24 -13.40 10.69 84.03 0.90 -12.50 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -32.59 3.54 -715.47 -2.53 -35.12 16 10 C 0.12 5.28 8.04 86.49 0.70 5.98 16 11 C 0.16 5.96 0.68 5.36 0.00 5.96 16 12 C -0.09 -3.57 4.67 30.59 0.14 -3.43 16 13 C 0.09 3.02 6.86 71.98 0.49 3.51 16 14 O -0.59 -18.88 13.66 -148.98 -2.04 -20.92 16 15 N -0.71 -18.32 4.52 -427.56 -1.93 -20.26 16 16 C 0.51 13.16 7.38 87.66 0.65 13.81 16 17 O -0.57 -20.54 14.22 -3.03 -0.04 -20.58 16 18 C -0.09 -1.35 5.78 29.10 0.17 -1.18 16 19 C -0.12 -2.45 4.33 -20.11 -0.09 -2.53 16 20 C -0.05 -1.18 9.51 22.01 0.21 -0.97 16 21 C -0.14 -3.42 10.08 22.38 0.23 -3.19 16 22 C 0.08 2.16 7.49 42.16 0.32 2.48 16 23 N -0.36 -8.98 12.70 -48.70 -0.62 -9.60 16 24 N -0.42 -6.27 7.18 -56.35 -0.40 -6.68 16 25 H 0.46 3.00 8.96 -213.41 -1.91 1.09 16 26 C 0.11 1.46 12.07 84.37 1.02 2.48 16 27 C -0.24 -5.13 6.33 -20.23 -0.13 -5.25 16 28 C -0.03 -0.58 9.66 22.38 0.22 -0.37 16 29 C 0.16 7.16 6.90 86.44 0.60 7.76 16 30 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 31 H 0.03 1.46 8.10 -2.39 -0.02 1.44 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.06 2.78 6.54 -2.38 -0.02 2.76 16 34 H 0.04 2.10 8.02 -2.38 -0.02 2.08 16 35 H 0.04 1.46 7.61 -2.38 -0.02 1.44 16 36 H 0.07 1.71 7.43 -2.39 -0.02 1.69 16 37 H 0.40 7.87 9.12 -74.06 -0.68 7.19 16 38 H 0.42 7.75 8.67 -92.71 -0.80 6.95 16 39 H 0.13 1.26 8.06 -2.38 -0.02 1.24 16 40 H 0.13 1.29 8.07 -2.39 -0.02 1.27 16 41 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 43 H 0.24 0.58 8.06 -2.91 -0.02 0.56 16 44 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.06 3.13 6.29 -2.39 -0.02 3.12 16 Total: -1.00 -86.29 385.50 -1.75 -88.05 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: -2.34 Total: 22.40 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.88 Total: 9.71 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -5.25 Total: -126.44 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -2.08 Total: -41.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -86.29 -1.75 -88.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675085999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.154 kcal (2) G-P(sol) polarization free energy of solvation -86.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds