Wall clock time and date at job start Wed Apr 1 2020 02:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99774 * 2 1 4 4 H 1.48502 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47269 * 299.99827 * 3 2 1 6 6 H 1.48501 * 109.47296 * 60.00545 * 3 2 1 7 7 C 1.37875 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00401 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99415 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46904 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.46907 * 180.02562 * 11 10 9 13 13 C 1.34777 * 119.99961 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99886 * 4.97756 * 13 12 11 15 15 N 1.34770 * 120.00505 * 184.98700 * 13 12 11 16 16 C 1.46927 * 120.64030 * 354.77709 * 15 13 12 17 17 C 1.53185 * 108.83724 * 233.83320 * 16 15 13 18 18 C 1.53074 * 109.31187 * 305.15212 * 17 16 15 19 19 C 1.52875 * 109.53086 * 61.01225 * 18 17 16 20 20 C 1.53878 * 109.72996 * 59.62746 * 19 18 17 21 21 C 1.55062 * 106.70083 * 166.66807 * 20 19 18 22 22 S 1.83289 * 102.58888 * 317.77931 * 21 20 19 23 23 O 1.42102 * 109.35486 * 269.78054 * 22 21 20 24 24 O 1.42105 * 109.47882 * 136.61149 * 22 21 20 25 25 C 1.54015 * 109.51196 * 179.00003 * 19 18 17 26 26 C 1.46966 * 120.65119 * 174.80684 * 15 13 12 27 27 H 0.97010 * 119.99917 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47815 * 60.00063 * 9 7 2 29 29 H 1.09003 * 109.46936 * 299.99203 * 9 7 2 30 30 H 1.09003 * 109.47179 * 59.99509 * 10 9 7 31 31 H 1.08997 * 109.47460 * 299.99635 * 10 9 7 32 32 H 1.08999 * 109.47367 * 60.00330 * 11 10 9 33 33 H 1.09003 * 109.47107 * 299.99639 * 11 10 9 34 34 H 0.96993 * 120.00491 * 0.02562 * 12 11 10 35 35 H 1.09000 * 109.57308 * 114.03051 * 16 15 13 36 36 H 1.08996 * 109.68393 * 353.70544 * 16 15 13 37 37 H 1.08999 * 109.49847 * 185.19868 * 17 16 15 38 38 H 1.08998 * 109.52779 * 65.12222 * 17 16 15 39 39 H 1.08993 * 109.45931 * 300.99139 * 18 17 16 40 40 H 1.09001 * 109.45153 * 181.02003 * 18 17 16 41 41 H 1.09004 * 109.94878 * 47.37627 * 20 19 18 42 42 H 1.09002 * 110.07180 * 286.03529 * 20 19 18 43 43 H 1.09002 * 110.79089 * 199.50386 * 21 20 19 44 44 H 1.08995 * 110.78467 * 76.05525 * 21 20 19 45 45 H 1.09001 * 110.32460 * 93.48105 * 25 19 18 46 46 H 1.09002 * 110.32149 * 331.37412 * 25 19 18 47 47 H 1.09002 * 109.58834 * 6.92463 * 26 15 13 48 48 H 1.08999 * 109.58720 * 246.49242 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4990 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4803 -4.9870 -0.0033 12 7 2.4324 -6.1005 -0.0037 13 6 1.9832 -7.3712 -0.0047 14 8 0.7915 -7.5947 -0.0967 15 7 2.8547 -8.3942 0.0964 16 6 4.3030 -8.1471 0.0936 17 6 4.9492 -9.0063 -0.9976 18 6 4.5671 -10.4725 -0.7801 19 6 3.0487 -10.6240 -0.8723 20 6 2.5639 -10.1639 -2.2584 21 6 1.1009 -10.6564 -2.4049 22 16 1.1792 -12.3523 -1.7139 23 8 1.4788 -13.2717 -2.7552 24 8 0.0536 -12.5748 -0.8755 25 6 2.6666 -12.1033 -0.6784 26 6 2.3750 -9.7786 0.2110 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6241 -2.5574 0.8881 30 1 2.8720 -3.6050 0.8873 31 1 2.8719 -3.6035 -0.8927 32 1 0.8533 -5.0443 -0.8931 33 1 0.8540 -5.0453 0.8869 34 1 3.3860 -5.9233 -0.0032 35 1 4.7209 -8.4143 1.0642 36 1 4.4953 -7.0936 -0.1093 37 1 6.0331 -8.9017 -0.9488 38 1 4.5960 -8.6794 -1.9756 39 1 4.9049 -10.7935 0.2051 40 1 5.0405 -11.0883 -1.5449 41 1 3.1865 -10.6067 -3.0360 42 1 2.6004 -9.0766 -2.3256 43 1 0.8035 -10.6793 -3.4533 44 1 0.4227 -10.0325 -1.8229 45 1 2.4365 -12.3008 0.3686 46 1 3.4758 -12.7507 -1.0162 47 1 1.2938 -9.8032 0.0743 48 1 2.6302 -10.1736 1.1943 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678484687.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:12 Heat of formation + Delta-G solvation = -108.063191 kcal Electronic energy + Delta-G solvation = -28863.258532 eV Core-core repulsion = 24852.074027 eV Total energy + Delta-G solvation = -4011.184505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02215 -38.88316 -37.36258 -36.34556 -35.49562 -35.39312 -33.30643 -32.67987 -31.26654 -30.90978 -27.98097 -26.93347 -25.50878 -24.55888 -22.99442 -22.79417 -20.71980 -20.30203 -19.29530 -18.93464 -18.13984 -17.11695 -16.93059 -16.53332 -16.18924 -15.96900 -15.62144 -15.21538 -14.98992 -14.78014 -14.60634 -14.35112 -14.18249 -13.87558 -13.59177 -13.53843 -13.30701 -12.81887 -12.66913 -12.46562 -12.34273 -12.31393 -12.18402 -11.86247 -11.79828 -11.71487 -11.59922 -11.32038 -11.22406 -10.94950 -10.75356 -10.73352 -10.59845 -10.55997 -10.13389 -9.91025 -9.48830 -9.14651 -9.07293 -8.61038 -8.40525 -6.04837 -4.08064 -0.31916 2.13810 2.49571 3.16639 3.21383 3.27435 3.35083 3.38098 3.58135 3.75907 3.89652 3.99779 4.07559 4.21013 4.41397 4.43703 4.48774 4.50109 4.55851 4.86108 4.98105 5.01695 5.07802 5.16069 5.24199 5.31088 5.31759 5.33638 5.39296 5.45982 5.50574 5.62105 5.66698 5.75574 5.78590 6.12747 6.19573 6.45656 6.56809 6.69856 6.91583 6.97266 7.60563 7.72821 7.93795 7.94933 8.34526 8.60702 8.98840 9.56328 11.06432 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022987 B = 0.002059 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.797729 B =13594.708318 C =14258.676023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.740 5.740 13 C 0.704 3.296 14 O -0.588 6.588 15 N -0.631 5.631 16 C 0.109 3.891 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.066 4.066 20 C -0.108 4.108 21 C -0.585 4.585 22 S 2.380 3.620 23 O -0.940 6.940 24 O -0.936 6.936 25 C -0.585 4.585 26 C 0.130 3.870 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.393 0.607 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.099 0.901 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.327 -26.017 -2.149 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.397 5.397 13 C 0.405 3.595 14 O -0.465 6.465 15 N -0.370 5.370 16 C -0.015 4.015 17 C -0.179 4.179 18 C -0.139 4.139 19 C -0.069 4.069 20 C -0.147 4.147 21 C -0.715 4.715 22 S 2.564 3.436 23 O -0.937 6.937 24 O -0.933 6.933 25 C -0.715 4.715 26 C 0.006 3.994 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.157 0.843 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.118 0.882 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.669 -26.825 -2.329 28.963 hybrid contribution 1.461 1.763 0.158 2.295 sum 12.130 -25.062 -2.171 27.928 Atomic orbital electron populations 1.69975 1.06060 1.26609 1.50557 1.25035 0.94857 0.99327 0.95281 0.86531 0.80009 0.83771 0.77626 1.19786 1.20994 1.20987 1.21225 0.92992 0.90918 1.50903 0.92622 1.19029 0.93840 0.90800 0.97707 1.21887 0.99797 0.93343 1.00757 1.21545 0.91311 0.84147 1.01968 1.45579 1.10562 1.04420 1.79096 1.15914 0.84879 0.80820 0.77891 1.90919 1.14195 1.83696 1.57740 1.47177 1.05570 1.05509 1.78709 1.21654 0.80278 1.00222 0.99332 1.22015 1.01052 0.94991 0.99795 1.21530 0.92295 0.96921 1.03118 1.21271 0.98510 0.90713 0.96364 1.22286 0.91568 1.05146 0.95692 1.30657 1.05088 1.22262 1.13526 1.09308 0.77856 0.78974 0.77419 1.93616 1.85139 1.59663 1.55326 1.93636 1.47558 1.84727 1.67382 1.30611 1.20970 1.03575 1.16345 1.21622 1.00703 0.79957 0.97085 0.92949 0.96245 0.96234 0.92809 0.92818 0.91824 0.91934 0.77100 0.91089 0.89950 0.90085 0.90791 0.90730 0.90777 0.89368 0.87959 0.84293 0.83612 0.83932 0.83954 0.88230 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.13 2.27 5.68 -4.04 -0.02 2.24 16 12 N -0.74 -10.01 5.47 -65.22 -0.36 -10.36 16 13 C 0.70 9.79 8.30 -86.92 -0.72 9.07 16 14 O -0.59 -10.52 15.77 5.29 0.08 -10.44 16 15 N -0.63 -5.98 2.31 -178.57 -0.41 -6.39 16 16 C 0.11 0.68 6.38 -3.71 -0.02 0.65 16 17 C -0.14 -0.63 5.79 -26.60 -0.15 -0.78 16 18 C -0.10 -0.40 4.56 -26.76 -0.12 -0.52 16 19 C -0.07 -0.37 0.54 -153.57 -0.08 -0.45 16 20 C -0.11 -0.68 4.39 -25.18 -0.11 -0.79 16 21 C -0.59 -4.17 6.83 38.25 0.26 -3.91 16 22 S 2.38 18.63 6.11 -107.50 -0.66 17.98 16 23 O -0.94 -10.22 18.15 -57.73 -1.05 -11.27 16 24 O -0.94 -11.07 18.15 -57.73 -1.05 -12.12 16 25 C -0.59 -2.64 6.23 37.69 0.23 -2.41 16 26 C 0.13 1.05 4.95 -3.77 -0.02 1.04 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.39 4.21 5.96 -40.82 -0.24 3.97 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.49 5.65 -51.93 -0.29 0.20 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.38 6.74 -51.93 -0.35 0.03 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.22 8.12 -51.93 -0.42 -0.20 16 41 H 0.09 0.39 8.11 -51.93 -0.42 -0.03 16 42 H 0.10 0.80 6.66 -51.93 -0.35 0.46 16 43 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.15 1.24 7.32 -51.93 -0.38 0.86 16 45 H 0.14 0.46 7.77 -51.93 -0.40 0.06 16 46 H 0.14 0.37 7.86 -51.93 -0.41 -0.04 16 47 H 0.10 0.99 5.73 -51.93 -0.30 0.69 16 48 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -37.90 383.97 -11.14 -49.03 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.75 Total: -1.66 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -1.45 Total: -10.93 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.03 Total: -42.55 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -2.01 Total: -33.82 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 18.63 SS G_CDS: -0.66 Total: 17.98 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.90 -11.14 -49.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678484687.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.032 kcal (2) G-P(sol) polarization free energy of solvation -37.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds