Wall clock time and date at job start Wed Apr 1 2020 02:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47043 * 274.84956 * 3 2 1 5 5 H 1.48500 * 109.46805 * 34.84914 * 3 2 1 6 6 H 1.48496 * 109.47072 * 154.84751 * 3 2 1 7 7 C 1.38811 * 119.99712 * 179.72075 * 2 1 3 8 8 H 1.07995 * 120.00145 * 341.47905 * 7 2 1 9 9 N 1.36944 * 119.99916 * 161.48601 * 7 2 1 10 10 C 1.46385 * 119.69723 * 328.28920 * 9 7 2 11 11 C 1.52704 * 109.77475 * 244.31251 * 10 9 7 12 12 S 1.81665 * 108.99127 * 301.91708 * 11 10 9 13 13 O 1.42107 * 108.65223 * 301.10187 * 12 11 10 14 14 O 1.42100 * 108.65391 * 169.80371 * 12 11 10 15 15 C 1.81668 * 101.38866 * 55.45013 * 12 11 10 16 16 H 1.08993 * 109.55548 * 64.28127 * 15 12 11 17 17 C 1.53009 * 109.55596 * 184.59470 * 15 12 11 18 18 C 1.52995 * 109.47275 * 294.47106 * 17 15 12 19 19 N 1.46502 * 109.47002 * 180.02562 * 18 17 15 20 20 C 1.34772 * 119.99895 * 179.97438 * 19 18 17 21 21 O 1.21284 * 120.00312 * 359.97438 * 20 19 18 22 22 C 1.50702 * 120.00122 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.47573 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47632 * 179.97438 * 23 22 20 25 25 C 1.52995 * 117.49965 * 243.62681 * 24 23 22 26 26 C 1.52996 * 117.50217 * 175.00290 * 24 23 22 27 27 C 1.46385 * 119.69736 * 148.56451 * 9 7 2 28 28 H 0.97004 * 119.99675 * 0.28311 * 1 2 3 29 29 H 1.09002 * 109.46436 * 4.33566 * 10 9 7 30 30 H 1.08998 * 109.46425 * 124.30491 * 10 9 7 31 31 H 1.08994 * 109.62844 * 182.00664 * 11 10 9 32 32 H 1.09003 * 109.53170 * 61.76682 * 11 10 9 33 33 H 1.09003 * 109.46843 * 54.47102 * 17 15 12 34 34 H 1.09002 * 109.46664 * 174.46737 * 17 15 12 35 35 H 1.09009 * 109.46852 * 299.99544 * 18 17 15 36 36 H 1.08993 * 109.47526 * 59.99919 * 18 17 15 37 37 H 0.96995 * 120.00190 * 359.97438 * 19 18 17 38 38 H 1.09003 * 109.46857 * 300.00347 * 22 20 19 39 39 H 1.09007 * 109.47159 * 60.00033 * 22 20 19 40 40 H 1.09005 * 109.47152 * 300.00594 * 23 22 20 41 41 H 1.09007 * 109.46804 * 59.99873 * 23 22 20 42 42 H 1.09000 * 115.54536 * 29.33155 * 24 23 22 43 43 H 1.09001 * 117.49921 * 359.97438 * 25 24 23 44 44 H 1.09002 * 117.50133 * 145.02116 * 25 24 23 45 45 H 1.09003 * 117.49773 * 214.97963 * 26 24 23 46 46 H 1.09007 * 117.49838 * 359.97438 * 26 24 23 47 47 H 1.09007 * 109.46515 * 235.68919 * 27 9 7 48 48 H 1.08999 * 109.46959 * 355.67981 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3953 2.1056 -1.3951 5 1 1.5027 2.6209 0.8000 6 1 3.5952 1.4127 0.5951 7 6 2.0102 -1.2022 0.0059 8 1 1.5121 -2.1117 0.3074 9 7 3.3264 -1.2347 -0.3706 10 6 3.8155 -0.2943 -1.3801 11 6 4.2709 -1.0590 -2.6210 12 16 5.5662 -2.2405 -2.1450 13 8 6.6459 -1.5217 -1.5643 14 8 5.8167 -3.1070 -3.2430 15 6 4.7279 -3.1849 -0.8390 16 1 3.8812 -3.7235 -1.2645 17 6 5.7095 -4.1795 -0.2158 18 6 6.1094 -5.2238 -1.2600 19 7 7.0487 -6.1764 -0.6630 20 6 7.5394 -7.1915 -1.4014 21 8 7.2030 -7.3167 -2.5599 22 6 8.5061 -8.1712 -0.7875 23 6 8.9050 -9.2163 -1.8313 24 6 9.8870 -10.2105 -1.2083 25 6 11.3007 -10.2662 -1.7905 26 6 10.3169 -11.4067 -2.0598 27 6 4.2302 -2.2137 0.2359 28 1 -0.4850 0.8401 -0.0042 29 1 3.0154 0.3937 -1.6535 30 1 4.6560 0.2691 -0.9748 31 1 4.6675 -0.3597 -3.3570 32 1 3.4249 -1.5975 -3.0481 33 1 6.5979 -3.6480 0.1252 34 1 5.2353 -4.6756 0.6312 35 1 5.2209 -5.7554 -1.6010 36 1 6.5834 -4.7278 -2.1069 37 1 7.3175 -6.0766 0.2636 38 1 9.3948 -7.6397 -0.4469 39 1 8.0322 -8.6669 0.0597 40 1 8.0161 -9.7476 -2.1715 41 1 9.3788 -8.7209 -2.6788 42 1 9.7775 -10.3697 -0.1355 43 1 11.5311 -9.5949 -2.6178 44 1 12.1217 -10.4621 -1.1009 45 1 10.4907 -12.3528 -1.5472 46 1 9.8999 -11.4856 -3.0638 47 1 5.0808 -1.6965 0.6800 48 1 3.6986 -2.7688 1.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688868775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:34 Heat of formation + Delta-G solvation = -66.590214 kcal Electronic energy + Delta-G solvation = -28332.780015 eV Core-core repulsion = 24323.393913 eV Total energy + Delta-G solvation = -4009.386102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.90286 -37.89556 -37.59252 -36.68822 -36.02282 -35.54121 -33.44345 -32.46519 -32.06175 -30.22593 -28.27762 -25.52813 -24.12121 -23.53146 -22.70259 -22.03428 -21.01853 -20.77449 -20.39200 -18.57088 -17.32031 -17.06897 -16.91107 -16.38909 -16.08435 -15.96520 -15.53657 -15.25574 -15.15673 -14.80086 -14.51418 -14.41895 -14.06917 -13.50497 -13.38609 -13.02001 -12.76294 -12.69958 -12.59668 -12.45000 -12.29262 -11.92587 -11.86852 -11.78898 -11.73586 -11.66091 -11.51921 -11.36876 -11.20884 -11.02670 -10.85294 -10.65759 -10.55122 -10.22096 -10.04593 -9.92734 -9.83160 -9.51936 -9.15288 -8.90696 -7.39975 -6.19674 -3.67542 0.33745 2.55006 2.94030 2.98030 3.13947 3.33773 3.34741 3.45631 3.83634 4.24270 4.28926 4.31227 4.42871 4.46580 4.57506 4.60104 4.66081 4.83221 4.89186 4.93225 5.00155 5.04388 5.11845 5.16659 5.26000 5.30402 5.37349 5.42035 5.50266 5.56626 5.62967 5.65980 5.69026 5.76389 5.81173 5.83646 5.97482 6.05517 6.14047 6.21756 6.23587 6.29062 6.39147 7.35110 7.67195 8.06254 8.12254 8.62147 9.42060 9.67826 10.94405 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.002149 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.814164 B =13024.848898 C =13430.433249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.035 3.965 3 Si 0.874 3.126 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.283 4.283 8 H 0.091 0.909 9 N -0.608 5.608 10 C 0.133 3.867 11 C -0.616 4.616 12 S 2.405 3.595 13 O -0.946 6.946 14 O -0.950 6.950 15 C -0.576 4.576 16 H 0.143 0.857 17 C -0.113 4.113 18 C 0.091 3.909 19 N -0.730 5.730 20 C 0.507 3.493 21 O -0.535 6.535 22 C -0.137 4.137 23 C -0.075 4.075 24 C -0.154 4.154 25 C -0.182 4.182 26 C -0.181 4.181 27 C 0.164 3.836 28 H 0.267 0.733 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.401 0.599 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.053 0.947 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.253 -14.805 0.910 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.166 4.166 3 Si 0.704 3.296 4 H -0.212 1.212 5 H -0.224 1.224 6 H -0.187 1.187 7 C -0.410 4.410 8 H 0.109 0.891 9 N -0.329 5.329 10 C 0.006 3.994 11 C -0.750 4.750 12 S 2.590 3.410 13 O -0.943 6.943 14 O -0.947 6.947 15 C -0.690 4.690 16 H 0.161 0.839 17 C -0.152 4.152 18 C -0.033 4.033 19 N -0.382 5.382 20 C 0.294 3.706 21 O -0.412 6.412 22 C -0.177 4.177 23 C -0.113 4.113 24 C -0.173 4.173 25 C -0.219 4.219 26 C -0.218 4.218 27 C 0.036 3.964 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.071 0.929 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.681 -14.875 -0.249 23.107 hybrid contribution -0.452 1.130 0.583 1.349 sum 17.230 -13.745 0.334 22.043 Atomic orbital electron populations 1.69801 1.05803 1.27078 1.50953 1.25372 0.95246 0.97872 0.98147 0.87049 0.80768 0.84446 0.77382 1.21160 1.22403 1.18685 1.18871 0.83536 0.94969 1.43649 0.89126 1.44354 1.08411 1.38011 1.42140 1.21085 0.99963 0.92797 0.85589 1.30548 1.18190 1.16519 1.09694 1.08333 0.77864 0.77661 0.77152 1.93534 1.49763 1.72505 1.78484 1.93563 1.84468 1.65129 1.51507 1.30458 1.10864 1.10296 1.17388 0.83933 1.21520 0.98781 0.95570 0.99348 1.21866 0.94037 0.90829 0.96575 1.45969 1.47543 1.29177 1.15553 1.20772 0.81642 0.81596 0.86630 1.90744 1.59651 1.73685 1.17082 1.21658 0.99048 0.96732 1.00222 1.20932 0.98699 0.94550 0.97113 1.22355 0.96321 0.99631 0.98959 1.23062 0.92928 1.02367 1.03562 1.22966 1.04124 0.93291 1.01455 1.20701 0.94372 0.89207 0.92096 0.92295 0.88878 0.92633 0.85551 0.84493 0.89703 0.88651 0.90343 0.89618 0.76489 0.88704 0.88790 0.90706 0.90921 0.87726 0.88686 0.88949 0.88891 0.88685 0.92856 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.52 13.97 55.49 0.78 -24.74 16 2 C 0.03 0.92 5.25 -17.43 -0.09 0.83 16 3 Si 0.87 20.42 24.48 -169.99 -4.16 16.26 16 4 H -0.28 -6.38 6.71 56.52 0.38 -6.00 16 5 H -0.30 -7.10 7.11 56.52 0.40 -6.69 16 6 H -0.26 -5.93 6.72 56.52 0.38 -5.55 16 7 C -0.28 -7.06 9.90 -15.06 -0.15 -7.21 16 8 H 0.09 2.41 8.06 -52.49 -0.42 1.98 16 9 N -0.61 -12.66 2.55 -173.49 -0.44 -13.11 16 10 C 0.13 2.63 4.03 -4.26 -0.02 2.61 16 11 C -0.62 -10.04 6.53 37.01 0.24 -9.80 16 12 S 2.41 38.63 4.33 -107.50 -0.47 38.17 16 13 O -0.95 -17.07 18.00 -57.81 -1.04 -18.11 16 14 O -0.95 -17.09 15.85 -57.81 -0.92 -18.01 16 15 C -0.58 -8.17 2.65 -26.63 -0.07 -8.24 16 16 H 0.14 1.93 8.14 -51.93 -0.42 1.51 16 17 C -0.11 -1.28 4.80 -26.73 -0.13 -1.41 16 18 C 0.09 1.17 5.34 -4.04 -0.02 1.15 16 19 N -0.73 -7.56 5.56 -60.29 -0.33 -7.89 16 20 C 0.51 5.99 7.83 -10.99 -0.09 5.91 16 21 O -0.54 -8.86 15.98 5.55 0.09 -8.77 16 22 C -0.14 -1.03 5.66 -27.89 -0.16 -1.19 16 23 C -0.08 -0.64 4.79 -26.73 -0.13 -0.77 16 24 C -0.15 -1.05 5.74 -90.63 -0.52 -1.57 16 25 C -0.18 -1.19 10.18 -26.74 -0.27 -1.46 16 26 C -0.18 -1.20 10.25 -26.74 -0.27 -1.48 16 27 C 0.16 2.71 5.56 -4.01 -0.02 2.69 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.09 1.99 3.93 -51.93 -0.20 1.79 16 30 H 0.06 1.05 7.62 -51.93 -0.40 0.66 16 31 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.14 2.13 8.14 -51.93 -0.42 1.71 16 33 H 0.08 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 36 H 0.09 1.34 5.66 -51.93 -0.29 1.04 16 37 H 0.40 2.68 8.47 -40.82 -0.35 2.33 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 41 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 42 H 0.10 0.59 8.07 -51.93 -0.42 0.18 16 43 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 44 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.09 1.45 7.88 -51.93 -0.41 1.04 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -34.32 389.43 -10.31 -44.63 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.99 Total: 5.63 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -1.70 Total: -19.93 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.00 Total: -45.74 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.87 Total: -44.89 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.16 Total: 16.26 kcal Atomic # 16 Polarization: 38.63 SS G_CDS: -0.47 Total: 38.17 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.32 -10.31 -44.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688868775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.958 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds