Wall clock time and date at job start Wed Apr 1 2020 02:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00199 * 2 1 4 4 H 1.48501 * 109.47043 * 274.84956 * 3 2 1 5 5 H 1.48500 * 109.46805 * 34.84914 * 3 2 1 6 6 H 1.48496 * 109.47072 * 154.84751 * 3 2 1 7 7 C 1.38811 * 119.99712 * 179.72075 * 2 1 3 8 8 H 1.07995 * 120.00145 * 341.47905 * 7 2 1 9 9 N 1.36944 * 119.99916 * 161.48601 * 7 2 1 10 10 C 1.46385 * 119.69723 * 328.28920 * 9 7 2 11 11 C 1.52704 * 109.77475 * 244.31251 * 10 9 7 12 12 S 1.81665 * 108.99127 * 301.91708 * 11 10 9 13 13 O 1.42107 * 108.65223 * 301.10187 * 12 11 10 14 14 O 1.42100 * 108.65391 * 169.80371 * 12 11 10 15 15 C 1.81668 * 101.38866 * 55.45013 * 12 11 10 16 16 H 1.08993 * 109.55548 * 64.28127 * 15 12 11 17 17 C 1.53009 * 109.55596 * 184.59470 * 15 12 11 18 18 C 1.52995 * 109.47275 * 294.47106 * 17 15 12 19 19 N 1.46502 * 109.47002 * 180.02562 * 18 17 15 20 20 C 1.34772 * 119.99895 * 179.97438 * 19 18 17 21 21 O 1.21284 * 120.00312 * 359.97438 * 20 19 18 22 22 C 1.50702 * 120.00122 * 179.97438 * 20 19 18 23 23 C 1.52994 * 109.47573 * 179.97438 * 22 20 19 24 24 C 1.52999 * 109.47632 * 179.97438 * 23 22 20 25 25 C 1.52995 * 117.49965 * 243.62681 * 24 23 22 26 26 C 1.52996 * 117.50217 * 175.00290 * 24 23 22 27 27 C 1.46385 * 119.69736 * 148.56451 * 9 7 2 28 28 H 0.97004 * 119.99675 * 0.28311 * 1 2 3 29 29 H 1.09002 * 109.46436 * 4.33566 * 10 9 7 30 30 H 1.08998 * 109.46425 * 124.30491 * 10 9 7 31 31 H 1.08994 * 109.62844 * 182.00664 * 11 10 9 32 32 H 1.09003 * 109.53170 * 61.76682 * 11 10 9 33 33 H 1.09003 * 109.46843 * 54.47102 * 17 15 12 34 34 H 1.09002 * 109.46664 * 174.46737 * 17 15 12 35 35 H 1.09009 * 109.46852 * 299.99544 * 18 17 15 36 36 H 1.08993 * 109.47526 * 59.99919 * 18 17 15 37 37 H 0.96995 * 120.00190 * 359.97438 * 19 18 17 38 38 H 1.09003 * 109.46857 * 300.00347 * 22 20 19 39 39 H 1.09007 * 109.47159 * 60.00033 * 22 20 19 40 40 H 1.09005 * 109.47152 * 300.00594 * 23 22 20 41 41 H 1.09007 * 109.46804 * 59.99873 * 23 22 20 42 42 H 1.09000 * 115.54536 * 29.33155 * 24 23 22 43 43 H 1.09001 * 117.49921 * 359.97438 * 25 24 23 44 44 H 1.09002 * 117.50133 * 145.02116 * 25 24 23 45 45 H 1.09003 * 117.49773 * 214.97963 * 26 24 23 46 46 H 1.09007 * 117.49838 * 359.97438 * 26 24 23 47 47 H 1.09007 * 109.46515 * 235.68919 * 27 9 7 48 48 H 1.08999 * 109.46959 * 355.67981 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3953 2.1056 -1.3951 5 1 1.5027 2.6209 0.8000 6 1 3.5952 1.4127 0.5951 7 6 2.0102 -1.2022 0.0059 8 1 1.5121 -2.1117 0.3074 9 7 3.3264 -1.2347 -0.3706 10 6 3.8155 -0.2943 -1.3801 11 6 4.2709 -1.0590 -2.6210 12 16 5.5662 -2.2405 -2.1450 13 8 6.6459 -1.5217 -1.5643 14 8 5.8167 -3.1070 -3.2430 15 6 4.7279 -3.1849 -0.8390 16 1 3.8812 -3.7235 -1.2645 17 6 5.7095 -4.1795 -0.2158 18 6 6.1094 -5.2238 -1.2600 19 7 7.0487 -6.1764 -0.6630 20 6 7.5394 -7.1915 -1.4014 21 8 7.2030 -7.3167 -2.5599 22 6 8.5061 -8.1712 -0.7875 23 6 8.9050 -9.2163 -1.8313 24 6 9.8870 -10.2105 -1.2083 25 6 11.3007 -10.2662 -1.7905 26 6 10.3169 -11.4067 -2.0598 27 6 4.2302 -2.2137 0.2359 28 1 -0.4850 0.8401 -0.0042 29 1 3.0154 0.3937 -1.6535 30 1 4.6560 0.2691 -0.9748 31 1 4.6675 -0.3597 -3.3570 32 1 3.4249 -1.5975 -3.0481 33 1 6.5979 -3.6480 0.1252 34 1 5.2353 -4.6756 0.6312 35 1 5.2209 -5.7554 -1.6010 36 1 6.5834 -4.7278 -2.1069 37 1 7.3175 -6.0766 0.2636 38 1 9.3948 -7.6397 -0.4469 39 1 8.0322 -8.6669 0.0597 40 1 8.0161 -9.7476 -2.1715 41 1 9.3788 -8.7209 -2.6788 42 1 9.7775 -10.3697 -0.1355 43 1 11.5311 -9.5949 -2.6178 44 1 12.1217 -10.4621 -1.1009 45 1 10.4907 -12.3528 -1.5472 46 1 9.8999 -11.4856 -3.0638 47 1 5.0808 -1.6965 0.6800 48 1 3.6986 -2.7688 1.0088 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688868775.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:32 Heat of formation + Delta-G solvation = -92.194697 kcal Electronic energy + Delta-G solvation = -28333.890309 eV Core-core repulsion = 24323.393913 eV Total energy + Delta-G solvation = -4010.496396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.83115 -39.10764 -38.42525 -38.00550 -37.30066 -36.78335 -34.65936 -33.89644 -33.12534 -31.66790 -29.55029 -26.54311 -25.69302 -24.68415 -23.20275 -23.07638 -22.54121 -21.47448 -21.17146 -19.91183 -18.96841 -18.15848 -17.94109 -17.69452 -17.20763 -16.85092 -16.73256 -16.62204 -16.30040 -16.14178 -15.50861 -15.33528 -15.20296 -14.76602 -14.47360 -14.37097 -14.26170 -14.00842 -13.85817 -13.68977 -13.24294 -13.16043 -13.10980 -13.01670 -12.66698 -12.52721 -12.44794 -12.38250 -12.35744 -12.29520 -12.21007 -12.11209 -11.72582 -11.45578 -11.23125 -10.91749 -10.89425 -10.77954 -10.71286 -10.12472 -9.15716 -8.20887 -5.64375 -0.94545 1.29496 1.44032 1.50810 1.65293 1.68801 2.11171 2.37555 2.58955 2.85268 2.93617 3.02817 3.17928 3.43062 3.61828 3.79784 3.80314 3.83943 3.94682 3.97659 4.06546 4.10850 4.19840 4.26310 4.30377 4.35276 4.44504 4.59315 4.62999 4.65786 4.76105 4.79561 4.82362 4.87259 4.93832 5.02268 5.07322 5.08263 5.08949 5.16221 5.29429 5.37234 5.48366 5.82262 6.10209 6.56759 6.79236 7.28954 7.49705 7.81247 8.96853 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027971 B = 0.002149 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.814164 B =13024.848898 C =13430.433249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.022 4.022 3 Si 0.925 3.075 4 H -0.274 1.274 5 H -0.309 1.309 6 H -0.247 1.247 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.620 5.620 10 C 0.122 3.878 11 C -0.618 4.618 12 S 2.415 3.585 13 O -0.963 6.963 14 O -0.972 6.972 15 C -0.560 4.560 16 H 0.149 0.851 17 C -0.107 4.107 18 C 0.089 3.911 19 N -0.716 5.716 20 C 0.500 3.500 21 O -0.592 6.592 22 C -0.126 4.126 23 C -0.075 4.075 24 C -0.152 4.152 25 C -0.183 4.183 26 C -0.189 4.189 27 C 0.159 3.841 28 H 0.264 0.736 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.422 0.578 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.655 -15.596 2.677 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.219 4.219 3 Si 0.754 3.246 4 H -0.200 1.200 5 H -0.238 1.238 6 H -0.171 1.171 7 C -0.388 4.388 8 H 0.085 0.915 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.751 4.751 12 S 2.601 3.399 13 O -0.961 6.961 14 O -0.969 6.969 15 C -0.676 4.676 16 H 0.167 0.833 17 C -0.146 4.146 18 C -0.036 4.036 19 N -0.370 5.370 20 C 0.288 3.712 21 O -0.473 6.473 22 C -0.165 4.165 23 C -0.113 4.113 24 C -0.170 4.170 25 C -0.220 4.220 26 C -0.226 4.226 27 C 0.033 3.967 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.260 0.740 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.143 0.857 43 H 0.105 0.895 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 20.162 -15.662 1.534 25.577 hybrid contribution -1.175 1.260 0.009 1.723 sum 18.987 -14.402 1.542 23.881 Atomic orbital electron populations 1.69927 1.07427 1.27459 1.54276 1.25956 0.95718 1.00959 0.99244 0.86204 0.79968 0.80737 0.77732 1.20046 1.23813 1.17067 1.18826 0.85198 0.93772 1.41051 0.91502 1.44437 1.07619 1.39045 1.43165 1.21113 0.99707 0.92921 0.86697 1.30540 1.18572 1.17047 1.08931 1.07997 0.77538 0.77215 0.77100 1.93505 1.50827 1.73020 1.78710 1.93547 1.84920 1.65441 1.52982 1.30296 1.11432 1.10100 1.15744 0.83349 1.21571 0.98900 0.94667 0.99443 1.21698 0.93930 0.91454 0.96495 1.45836 1.46556 1.28114 1.16457 1.21613 0.81566 0.81993 0.86013 1.90724 1.61726 1.75112 1.19703 1.21693 0.98971 0.95576 1.00253 1.20868 0.98287 0.95070 0.97068 1.22350 0.95821 0.98993 0.99801 1.23116 0.93249 1.02026 1.03598 1.23040 1.04288 0.93976 1.01253 1.20911 0.94257 0.88838 0.92724 0.92729 0.90725 0.91413 0.83080 0.84135 0.88108 0.85359 0.91378 0.92538 0.74007 0.86186 0.85637 0.92513 0.93146 0.85698 0.89514 0.87520 0.87611 0.89666 0.91068 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.23 13.97 21.65 0.30 -54.93 16 2 C -0.02 -1.19 5.25 84.86 0.45 -0.74 16 3 Si 0.93 41.88 24.48 68.60 1.68 43.56 16 4 H -0.27 -11.75 6.71 99.48 0.67 -11.09 16 5 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 6 H -0.25 -10.41 6.72 99.48 0.67 -9.74 16 7 C -0.26 -12.87 9.90 84.03 0.83 -12.04 16 8 H 0.07 3.58 8.06 -2.91 -0.02 3.56 16 9 N -0.62 -24.74 2.55 -702.80 -1.79 -26.54 16 10 C 0.12 4.59 4.03 86.30 0.35 4.94 16 11 C -0.62 -19.07 6.53 71.88 0.47 -18.60 16 12 S 2.41 73.36 4.33 -56.49 -0.24 73.11 16 13 O -0.96 -32.61 18.00 -127.39 -2.29 -34.91 16 14 O -0.97 -34.34 15.85 -127.39 -2.02 -36.36 16 15 C -0.56 -14.47 2.65 30.66 0.08 -14.39 16 16 H 0.15 3.73 8.14 -2.39 -0.02 3.71 16 17 C -0.11 -2.06 4.80 30.60 0.15 -1.92 16 18 C 0.09 2.15 5.34 86.38 0.46 2.61 16 19 N -0.72 -13.10 5.56 -463.06 -2.57 -15.68 16 20 C 0.50 11.17 7.83 87.66 0.69 11.86 16 21 O -0.59 -19.98 15.98 -3.04 -0.05 -20.03 16 22 C -0.13 -1.56 5.66 29.85 0.17 -1.39 16 23 C -0.07 -1.21 4.79 30.59 0.15 -1.07 16 24 C -0.15 -1.76 5.74 -10.80 -0.06 -1.82 16 25 C -0.18 -2.11 10.18 30.59 0.31 -1.80 16 26 C -0.19 -2.28 10.25 30.59 0.31 -1.96 16 27 C 0.16 4.79 5.56 86.46 0.48 5.27 16 28 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 29 H 0.07 3.09 3.93 -2.39 -0.01 3.08 16 30 H 0.07 2.38 7.62 -2.39 -0.02 2.36 16 31 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 33 H 0.10 1.70 8.13 -2.39 -0.02 1.68 16 34 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.06 1.73 5.66 -2.39 -0.01 1.72 16 37 H 0.42 4.01 8.47 -92.71 -0.79 3.22 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.06 1.11 8.10 -2.38 -0.02 1.09 16 41 H 0.05 1.02 7.83 -2.38 -0.02 1.00 16 42 H 0.13 0.97 8.07 -2.39 -0.02 0.95 16 43 H 0.09 1.13 8.03 -2.39 -0.02 1.11 16 44 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 47 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.10 2.90 7.88 -2.39 -0.02 2.88 16 Total: -1.00 -76.87 389.43 -2.07 -78.93 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.09 Total: 23.88 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.83 Total: -31.05 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -4.06 Total: -97.14 kcal Atomic # 8 Polarization: -86.94 SS G_CDS: -4.36 Total: -91.30 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.68 Total: 43.56 kcal Atomic # 16 Polarization: 73.36 SS G_CDS: -0.24 Total: 73.11 kcal Total: -76.87 -2.07 -78.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688868775.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.261 kcal (2) G-P(sol) polarization free energy of solvation -76.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds