Wall clock time and date at job start Wed Apr 1 2020 03:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00066 * 2 1 4 4 H 1.48493 * 109.47521 * 274.90998 * 3 2 1 5 5 H 1.48501 * 109.47119 * 34.91288 * 3 2 1 6 6 H 1.48504 * 109.46759 * 154.90935 * 3 2 1 7 7 C 1.38809 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99586 * 339.75118 * 7 2 1 9 9 N 1.36937 * 120.00456 * 159.75303 * 7 2 1 10 10 C 1.46922 * 120.63209 * 152.78517 * 9 7 2 11 11 C 1.53194 * 108.77336 * 126.37314 * 10 9 7 12 12 C 1.53049 * 109.33664 * 54.61875 * 11 10 9 13 13 C 1.53032 * 109.54068 * 298.68580 * 12 11 10 14 14 H 1.09001 * 109.46915 * 301.36439 * 13 12 11 15 15 N 1.46498 * 109.52360 * 181.30261 * 13 12 11 16 16 C 1.34777 * 120.00184 * 155.11316 * 15 13 12 17 17 O 1.21283 * 119.99849 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99917 * 179.97438 * 16 15 13 19 19 S 1.81406 * 109.46989 * 179.97438 * 18 16 15 20 20 O 1.42099 * 108.57812 * 294.48634 * 19 18 16 21 21 O 1.42098 * 108.57559 * 65.51340 * 19 18 16 22 22 C 1.81400 * 101.91994 * 179.97438 * 19 18 16 23 23 C 1.54261 * 110.03293 * 302.90813 * 22 19 18 24 24 C 1.54968 * 104.16193 * 217.13525 * 23 22 19 25 25 C 1.54895 * 102.77233 * 37.88684 * 24 23 22 26 26 C 1.53873 * 110.03066 * 185.69080 * 22 19 18 27 27 C 1.46925 * 120.62633 * 332.77418 * 9 7 2 28 28 H 0.97003 * 119.99736 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58606 * 6.59308 * 10 9 7 30 30 H 1.08998 * 109.58973 * 246.16028 * 10 9 7 31 31 H 1.08995 * 109.50154 * 174.58627 * 11 10 9 32 32 H 1.08998 * 109.50210 * 294.65750 * 11 10 9 33 33 H 1.09005 * 109.45820 * 58.67590 * 12 11 10 34 34 H 1.09003 * 109.46114 * 178.63064 * 12 11 10 35 35 H 0.97001 * 120.00084 * 335.10828 * 15 13 12 36 36 H 1.09002 * 109.47471 * 299.99648 * 18 16 15 37 37 H 1.08997 * 109.47430 * 60.00021 * 18 16 15 38 38 H 1.09000 * 110.01672 * 64.30132 * 22 19 18 39 39 H 1.09004 * 110.48890 * 335.78062 * 23 22 19 40 40 H 1.09002 * 110.48641 * 98.42779 * 23 22 19 41 41 H 1.09001 * 110.72126 * 279.57908 * 24 23 22 42 42 H 1.08995 * 110.76971 * 156.22243 * 24 23 22 43 43 H 1.09004 * 110.48448 * 203.40607 * 25 24 23 44 44 H 1.08997 * 110.48240 * 80.76722 * 25 24 23 45 45 H 1.09002 * 110.03030 * 238.57125 * 26 22 19 46 46 H 1.09006 * 110.03363 * 359.95136 * 26 22 19 47 47 H 1.08997 * 109.59093 * 353.41016 * 27 9 7 48 48 H 1.09000 * 109.58628 * 113.84061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3940 2.1064 -1.3948 5 1 1.5035 2.6205 0.8013 6 1 3.5959 1.4123 0.5937 7 6 2.0103 -1.2021 -0.0005 8 1 1.5202 -2.1087 0.3228 9 7 3.3162 -1.2387 -0.4109 10 6 4.2334 -2.2659 0.1012 11 6 4.8795 -2.9863 -1.0863 12 6 5.5396 -1.9562 -2.0058 13 6 4.4774 -0.9946 -2.5431 14 1 3.7171 -1.5583 -3.0838 15 7 5.1047 -0.0278 -3.4476 16 6 4.3713 0.5734 -4.4053 17 8 3.1921 0.3137 -4.5186 18 6 5.0166 1.5683 -5.3352 19 16 3.7782 2.1960 -6.5028 20 8 3.3557 1.1240 -7.3344 21 8 2.8061 2.9360 -5.7772 22 6 4.7567 3.3519 -7.5013 23 6 5.4076 4.4151 -6.5927 24 6 5.3423 5.7189 -7.4278 25 6 3.9670 5.6064 -8.1313 26 6 3.8414 4.1089 -8.4795 27 6 3.8267 -0.2516 -1.3720 28 1 -0.4850 0.8401 0.0004 29 1 3.6779 -2.9832 0.7055 30 1 5.0070 -1.7953 0.7080 31 1 5.6330 -3.6846 -0.7222 32 1 4.1156 -3.5317 -1.6405 33 1 6.2867 -1.3947 -1.4447 34 1 6.0210 -2.4686 -2.8388 35 1 6.0480 0.1797 -3.3571 36 1 5.4229 2.3971 -4.7555 37 1 5.8212 1.0816 -5.8864 38 1 5.5256 2.8105 -8.0525 39 1 4.8407 4.5257 -5.6683 40 1 6.4429 4.1506 -6.3772 41 1 6.1493 5.7487 -8.1599 42 1 5.3744 6.5948 -6.7800 43 1 3.9516 6.2115 -9.0379 44 1 3.1671 5.9094 -7.4557 45 1 4.1666 3.9355 -9.5053 46 1 2.8093 3.7810 -8.3548 47 1 3.0030 0.3602 -1.7399 48 1 4.5671 0.3832 -0.8854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690041460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:06 Heat of formation + Delta-G solvation = -87.078630 kcal Electronic energy + Delta-G solvation = -29514.487160 eV Core-core repulsion = 25504.212613 eV Total energy + Delta-G solvation = -4010.274547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -39.89534 -38.43668 -37.71122 -36.99815 -36.02200 -34.46065 -32.77218 -31.26192 -30.67130 -29.59054 -29.35303 -28.45252 -25.29341 -23.02078 -22.08088 -21.54559 -21.23002 -20.51495 -19.57576 -18.83457 -17.78153 -17.21416 -16.87538 -16.44053 -16.27777 -16.00591 -15.53926 -15.13080 -14.93070 -14.61241 -14.18922 -13.93111 -13.83662 -13.74540 -13.33913 -13.11751 -12.85796 -12.76472 -12.36933 -12.28182 -12.18878 -12.06922 -12.01020 -11.66768 -11.61719 -11.59971 -11.54675 -11.20287 -11.14490 -11.06655 -10.76333 -10.62488 -10.46172 -10.29430 -10.23884 -9.93440 -9.76434 -9.43476 -8.99422 -8.50772 -6.95173 -5.88347 -3.25608 -0.29281 2.51191 2.54354 2.94936 3.44406 3.50560 3.55595 3.55918 3.65779 3.95002 4.07476 4.33153 4.42252 4.60211 4.60917 4.71701 4.81841 4.85070 4.87707 5.03083 5.05851 5.12241 5.18636 5.20793 5.23197 5.39078 5.43390 5.50583 5.51065 5.59603 5.62427 5.78202 5.87214 5.90809 5.98952 6.16953 6.23564 6.39590 6.44903 6.57850 6.63117 6.73715 6.89933 7.44376 7.99662 8.15858 8.39065 8.97681 9.77633 10.12228 11.27412 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.003387 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.106468 B = 8264.744609 C = 9140.089719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.030 3.970 3 Si 0.874 3.126 4 H -0.283 1.283 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.267 4.267 8 H 0.088 0.912 9 N -0.600 5.600 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.115 4.115 13 C 0.120 3.880 14 H 0.096 0.904 15 N -0.712 5.712 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.661 4.661 19 S 2.446 3.554 20 O -0.920 6.920 21 O -0.909 6.909 22 C -0.586 4.586 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.099 4.099 27 C 0.118 3.882 28 H 0.264 0.736 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.398 0.602 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.619 8.228 -16.065 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.170 4.170 3 Si 0.704 3.296 4 H -0.211 1.211 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.395 4.395 8 H 0.105 0.895 9 N -0.324 5.324 10 C 0.020 3.980 11 C -0.173 4.173 12 C -0.154 4.154 13 C 0.015 3.985 14 H 0.114 0.886 15 N -0.363 5.363 16 C 0.316 3.684 17 O -0.391 6.391 18 C -0.789 4.789 19 S 2.623 3.377 20 O -0.917 6.917 21 O -0.906 6.906 22 C -0.695 4.695 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.166 4.166 26 C -0.138 4.138 27 C -0.009 4.009 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.176 0.824 37 H 0.176 0.824 38 H 0.158 0.842 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 17.691 7.858 -16.147 25.208 hybrid contribution 1.979 1.240 0.033 2.336 sum 19.671 9.099 -16.114 27.007 Atomic orbital electron populations 1.69821 1.05709 1.26656 1.52243 1.25250 0.95202 0.97550 0.98970 0.87036 0.80050 0.85164 0.77331 1.21060 1.22926 1.19592 1.18880 0.84778 0.94802 1.41070 0.89477 1.44269 1.08742 1.33037 1.46333 1.20989 0.92496 0.91326 0.93237 1.22015 0.99675 0.97315 0.98273 1.21682 0.97311 0.97276 0.99100 1.21954 0.95604 0.89822 0.91130 0.88572 1.45979 1.12997 1.44318 1.33018 1.19093 0.86844 0.81222 0.81217 1.90944 1.14623 1.62571 1.70941 1.30892 1.21192 1.10512 1.16279 1.07828 0.77006 0.76310 0.76567 1.93580 1.78228 1.53321 1.66558 1.93615 1.53196 1.72191 1.71564 1.31007 1.13149 1.13695 1.11610 1.22341 1.01242 0.94055 0.97618 1.22451 0.97528 0.96797 0.98714 1.22432 0.98078 0.94890 1.01157 1.21849 0.97869 0.95585 0.98467 1.21727 0.97773 0.92475 0.88914 0.92640 0.91532 0.95886 0.92033 0.91519 0.92023 0.92335 0.76847 0.82396 0.82429 0.84212 0.89833 0.89606 0.90941 0.90584 0.90684 0.90371 0.89548 0.91013 0.90205 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -29.23 13.97 55.49 0.78 -28.46 16 2 C 0.03 0.92 5.24 -17.43 -0.09 0.83 16 3 Si 0.87 23.76 24.35 -169.99 -4.14 19.62 16 4 H -0.28 -7.83 6.70 56.52 0.38 -7.45 16 5 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 6 H -0.27 -6.98 6.45 56.52 0.36 -6.61 16 7 C -0.27 -7.80 10.04 -15.06 -0.15 -7.95 16 8 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 9 N -0.60 -14.70 2.77 -172.32 -0.48 -15.18 16 10 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 11 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 12 C -0.12 -1.66 5.36 -26.69 -0.14 -1.80 16 13 C 0.12 2.21 2.60 -67.81 -0.18 2.04 16 14 H 0.10 2.06 7.58 -51.93 -0.39 1.66 16 15 N -0.71 -10.59 5.08 -53.69 -0.27 -10.87 16 16 C 0.53 9.03 7.81 -10.99 -0.09 8.94 16 17 O -0.52 -11.83 15.29 2.56 0.04 -11.79 16 18 C -0.66 -6.88 5.94 36.01 0.21 -6.66 16 19 S 2.45 32.62 3.12 -107.50 -0.34 32.28 16 20 O -0.92 -15.56 17.95 -59.52 -1.07 -16.63 16 21 O -0.91 -16.30 17.57 -59.53 -1.05 -17.34 16 22 C -0.59 -4.49 3.38 -25.62 -0.09 -4.58 16 23 C -0.11 -0.72 5.49 -25.03 -0.14 -0.86 16 24 C -0.12 -0.69 6.91 -24.69 -0.17 -0.86 16 25 C -0.13 -0.91 6.83 -25.07 -0.17 -1.08 16 26 C -0.10 -0.81 6.48 -25.62 -0.17 -0.97 16 27 C 0.12 2.71 3.76 -3.71 -0.01 2.70 16 28 H 0.26 8.15 8.31 -40.82 -0.34 7.81 16 29 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.40 3.99 8.60 -40.82 -0.35 3.64 16 36 H 0.16 1.06 7.62 -51.92 -0.40 0.66 16 37 H 0.16 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.60 7.49 -51.93 -0.39 0.21 16 40 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.68 7.60 -51.93 -0.39 0.28 16 47 H 0.08 2.16 4.49 -51.93 -0.23 1.92 16 48 H 0.03 0.57 6.98 -51.93 -0.36 0.21 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -42.09 383.32 -10.16 -52.24 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.05 Total: 0.04 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.37 Total: -9.70 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: 0.02 Total: -54.50 kcal Atomic # 8 Polarization: -43.69 SS G_CDS: -2.07 Total: -45.76 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.14 Total: 19.62 kcal Atomic # 16 Polarization: 32.62 SS G_CDS: -0.34 Total: 32.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -42.09 -10.16 -52.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690041460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.834 kcal (2) G-P(sol) polarization free energy of solvation -42.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds