Wall clock time and date at job start Wed Apr 1 2020 03:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00066 * 2 1 4 4 H 1.48493 * 109.47521 * 274.90998 * 3 2 1 5 5 H 1.48501 * 109.47119 * 34.91288 * 3 2 1 6 6 H 1.48504 * 109.46759 * 154.90935 * 3 2 1 7 7 C 1.38809 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99586 * 339.75118 * 7 2 1 9 9 N 1.36937 * 120.00456 * 159.75303 * 7 2 1 10 10 C 1.46922 * 120.63209 * 152.78517 * 9 7 2 11 11 C 1.53194 * 108.77336 * 126.37314 * 10 9 7 12 12 C 1.53049 * 109.33664 * 54.61875 * 11 10 9 13 13 C 1.53032 * 109.54068 * 298.68580 * 12 11 10 14 14 H 1.09001 * 109.46915 * 301.36439 * 13 12 11 15 15 N 1.46498 * 109.52360 * 181.30261 * 13 12 11 16 16 C 1.34777 * 120.00184 * 155.11316 * 15 13 12 17 17 O 1.21283 * 119.99849 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99917 * 179.97438 * 16 15 13 19 19 S 1.81406 * 109.46989 * 179.97438 * 18 16 15 20 20 O 1.42099 * 108.57812 * 294.48634 * 19 18 16 21 21 O 1.42098 * 108.57559 * 65.51340 * 19 18 16 22 22 C 1.81400 * 101.91994 * 179.97438 * 19 18 16 23 23 C 1.54261 * 110.03293 * 302.90813 * 22 19 18 24 24 C 1.54968 * 104.16193 * 217.13525 * 23 22 19 25 25 C 1.54895 * 102.77233 * 37.88684 * 24 23 22 26 26 C 1.53873 * 110.03066 * 185.69080 * 22 19 18 27 27 C 1.46925 * 120.62633 * 332.77418 * 9 7 2 28 28 H 0.97003 * 119.99736 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58606 * 6.59308 * 10 9 7 30 30 H 1.08998 * 109.58973 * 246.16028 * 10 9 7 31 31 H 1.08995 * 109.50154 * 174.58627 * 11 10 9 32 32 H 1.08998 * 109.50210 * 294.65750 * 11 10 9 33 33 H 1.09005 * 109.45820 * 58.67590 * 12 11 10 34 34 H 1.09003 * 109.46114 * 178.63064 * 12 11 10 35 35 H 0.97001 * 120.00084 * 335.10828 * 15 13 12 36 36 H 1.09002 * 109.47471 * 299.99648 * 18 16 15 37 37 H 1.08997 * 109.47430 * 60.00021 * 18 16 15 38 38 H 1.09000 * 110.01672 * 64.30132 * 22 19 18 39 39 H 1.09004 * 110.48890 * 335.78062 * 23 22 19 40 40 H 1.09002 * 110.48641 * 98.42779 * 23 22 19 41 41 H 1.09001 * 110.72126 * 279.57908 * 24 23 22 42 42 H 1.08995 * 110.76971 * 156.22243 * 24 23 22 43 43 H 1.09004 * 110.48448 * 203.40607 * 25 24 23 44 44 H 1.08997 * 110.48240 * 80.76722 * 25 24 23 45 45 H 1.09002 * 110.03030 * 238.57125 * 26 22 19 46 46 H 1.09006 * 110.03363 * 359.95136 * 26 22 19 47 47 H 1.08997 * 109.59093 * 353.41016 * 27 9 7 48 48 H 1.09000 * 109.58628 * 113.84061 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3940 2.1064 -1.3948 5 1 1.5035 2.6205 0.8013 6 1 3.5959 1.4123 0.5937 7 6 2.0103 -1.2021 -0.0005 8 1 1.5202 -2.1087 0.3228 9 7 3.3162 -1.2387 -0.4109 10 6 4.2334 -2.2659 0.1012 11 6 4.8795 -2.9863 -1.0863 12 6 5.5396 -1.9562 -2.0058 13 6 4.4774 -0.9946 -2.5431 14 1 3.7171 -1.5583 -3.0838 15 7 5.1047 -0.0278 -3.4476 16 6 4.3713 0.5734 -4.4053 17 8 3.1921 0.3137 -4.5186 18 6 5.0166 1.5683 -5.3352 19 16 3.7782 2.1960 -6.5028 20 8 3.3557 1.1240 -7.3344 21 8 2.8061 2.9360 -5.7772 22 6 4.7567 3.3519 -7.5013 23 6 5.4076 4.4151 -6.5927 24 6 5.3423 5.7189 -7.4278 25 6 3.9670 5.6064 -8.1313 26 6 3.8414 4.1089 -8.4795 27 6 3.8267 -0.2516 -1.3720 28 1 -0.4850 0.8401 0.0004 29 1 3.6779 -2.9832 0.7055 30 1 5.0070 -1.7953 0.7080 31 1 5.6330 -3.6846 -0.7222 32 1 4.1156 -3.5317 -1.6405 33 1 6.2867 -1.3947 -1.4447 34 1 6.0210 -2.4686 -2.8388 35 1 6.0480 0.1797 -3.3571 36 1 5.4229 2.3971 -4.7555 37 1 5.8212 1.0816 -5.8864 38 1 5.5256 2.8105 -8.0525 39 1 4.8407 4.5257 -5.6683 40 1 6.4429 4.1506 -6.3772 41 1 6.1493 5.7487 -8.1599 42 1 5.3744 6.5948 -6.7800 43 1 3.9516 6.2115 -9.0379 44 1 3.1671 5.9094 -7.4557 45 1 4.1666 3.9355 -9.5053 46 1 2.8093 3.7810 -8.3548 47 1 3.0030 0.3602 -1.7399 48 1 4.5671 0.3832 -0.8854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690041460.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:05 Heat of formation + Delta-G solvation = -123.522970 kcal Electronic energy + Delta-G solvation = -29516.067505 eV Core-core repulsion = 25504.212613 eV Total energy + Delta-G solvation = -4011.854892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28072 -39.29653 -38.99729 -38.07621 -37.11693 -36.07763 -34.58421 -32.71873 -32.27561 -30.41955 -30.00869 -29.45377 -27.24760 -24.58979 -23.69711 -22.34379 -21.95094 -21.64926 -21.04076 -19.77867 -18.95312 -18.72040 -18.33699 -17.60644 -17.38353 -17.22225 -16.64471 -16.42948 -16.15445 -15.92361 -15.51745 -15.38939 -15.06725 -15.01767 -14.55057 -14.45524 -14.16806 -13.89194 -13.77733 -13.71756 -13.46086 -13.20592 -13.14279 -12.85096 -12.69442 -12.62607 -12.49464 -12.22416 -12.15996 -12.08328 -11.97648 -11.85782 -11.77723 -11.68887 -11.53070 -11.41182 -11.34894 -11.13858 -10.87423 -10.34042 -8.98128 -8.25273 -5.56133 -1.21481 1.21773 1.25585 1.26779 1.37049 1.65631 1.80912 2.34855 2.70305 2.87090 2.98980 3.26599 3.30764 3.43000 3.48553 3.76750 3.84362 3.89407 3.99684 4.11384 4.15345 4.19269 4.30584 4.31980 4.36622 4.38850 4.48198 4.63745 4.71788 4.75336 4.77548 4.84328 4.94359 4.96488 5.04181 5.04635 5.13700 5.13923 5.20281 5.20332 5.28555 5.41614 5.52598 5.80139 6.05265 6.25668 6.84776 7.03534 7.55932 7.94248 8.94579 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014795 B = 0.003387 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.106468 B = 8264.744609 C = 9140.089719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.038 4.038 3 Si 0.940 3.060 4 H -0.301 1.301 5 H -0.305 1.305 6 H -0.238 1.238 7 C -0.249 4.249 8 H 0.056 0.944 9 N -0.618 5.618 10 C 0.136 3.864 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.127 3.873 14 H 0.052 0.948 15 N -0.692 5.692 16 C 0.515 3.485 17 O -0.591 6.591 18 C -0.639 4.639 19 S 2.403 3.597 20 O -0.980 6.980 21 O -0.983 6.983 22 C -0.538 4.538 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.135 4.135 26 C -0.117 4.117 27 C 0.115 3.885 28 H 0.259 0.741 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.428 0.572 36 H 0.205 0.795 37 H 0.222 0.778 38 H 0.191 0.809 39 H 0.069 0.931 40 H 0.134 0.866 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.054 0.946 45 H 0.114 0.886 46 H 0.043 0.957 47 H 0.029 0.971 48 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.048 9.244 -17.184 33.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.233 4.233 3 Si 0.769 3.231 4 H -0.229 1.229 5 H -0.234 1.234 6 H -0.161 1.161 7 C -0.379 4.379 8 H 0.074 0.926 9 N -0.343 5.343 10 C 0.012 3.988 11 C -0.166 4.166 12 C -0.142 4.142 13 C 0.020 3.980 14 H 0.071 0.929 15 N -0.345 5.345 16 C 0.301 3.699 17 O -0.472 6.472 18 C -0.769 4.769 19 S 2.590 3.410 20 O -0.977 6.977 21 O -0.980 6.980 22 C -0.652 4.652 23 C -0.163 4.163 24 C -0.152 4.152 25 C -0.173 4.173 26 C -0.156 4.156 27 C -0.012 4.012 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.267 0.733 36 H 0.222 0.778 37 H 0.239 0.761 38 H 0.209 0.791 39 H 0.087 0.913 40 H 0.152 0.848 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.132 0.868 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 25.192 8.829 -17.238 31.776 hybrid contribution -0.286 0.866 0.313 0.964 sum 24.905 9.695 -16.925 31.634 Atomic orbital electron populations 1.69967 1.07479 1.27035 1.55779 1.25947 0.95883 1.01185 1.00286 0.85985 0.80148 0.80767 0.76184 1.22900 1.23371 1.16118 1.18893 0.87042 0.93394 1.38533 0.92627 1.44434 1.07878 1.34556 1.47443 1.21290 0.92106 0.90174 0.95192 1.21945 1.00124 0.97874 0.96651 1.21678 0.96076 0.96192 1.00235 1.21542 0.96599 0.90333 0.89525 0.92946 1.45707 1.14180 1.43029 1.31548 1.20212 0.86217 0.81579 0.81921 1.90936 1.18309 1.65005 1.72944 1.30725 1.20794 1.10442 1.14904 1.08516 0.78744 0.76552 0.77169 1.93501 1.80812 1.55851 1.67534 1.93530 1.57975 1.73121 1.73384 1.30701 1.12225 1.11943 1.10340 1.22632 1.03468 0.93536 0.96681 1.22512 0.96878 0.96719 0.99100 1.22509 0.98791 0.94251 1.01783 1.22098 0.96788 0.96462 1.00233 1.21708 0.96688 0.92418 0.90369 0.93175 0.92585 0.93240 0.87462 0.93786 0.88754 0.88754 0.73292 0.77828 0.76131 0.79147 0.91263 0.84774 0.88409 0.90073 0.88980 0.92692 0.86753 0.93870 0.95250 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -66.18 13.97 21.65 0.30 -65.88 16 2 C -0.04 -2.46 5.24 84.86 0.44 -2.02 16 3 Si 0.94 51.49 24.35 68.60 1.67 53.16 16 4 H -0.30 -17.16 6.70 99.48 0.67 -16.49 16 5 H -0.31 -16.64 7.11 99.48 0.71 -15.93 16 6 H -0.24 -11.55 6.45 99.48 0.64 -10.90 16 7 C -0.25 -15.19 10.04 84.03 0.84 -14.34 16 8 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 9 N -0.62 -30.38 2.77 -699.11 -1.94 -32.32 16 10 C 0.14 4.98 6.52 86.36 0.56 5.55 16 11 C -0.13 -3.49 6.08 30.68 0.19 -3.31 16 12 C -0.10 -2.47 5.36 30.62 0.16 -2.31 16 13 C 0.13 4.48 2.60 45.07 0.12 4.59 16 14 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 15 N -0.69 -18.46 5.08 -442.17 -2.25 -20.71 16 16 C 0.51 16.96 7.81 87.66 0.69 17.65 16 17 O -0.59 -28.93 15.29 -0.17 0.00 -28.94 16 18 C -0.64 -11.00 5.94 71.24 0.42 -10.58 16 19 S 2.40 64.59 3.12 -56.49 -0.18 64.41 16 20 O -0.98 -35.16 17.95 -125.76 -2.26 -37.42 16 21 O -0.98 -38.55 17.57 -125.74 -2.21 -40.76 16 22 C -0.54 -6.34 3.38 31.32 0.11 -6.23 16 23 C -0.12 -0.98 5.49 31.69 0.17 -0.80 16 24 C -0.11 -0.86 6.91 31.91 0.22 -0.64 16 25 C -0.14 -1.69 6.83 31.67 0.22 -1.48 16 26 C -0.12 -1.73 6.48 31.32 0.20 -1.53 16 27 C 0.11 5.19 3.76 86.36 0.33 5.52 16 28 H 0.26 17.21 8.31 -92.71 -0.77 16.44 16 29 H 0.06 2.12 7.93 -2.39 -0.02 2.11 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.43 6.05 8.60 -92.71 -0.80 5.25 16 36 H 0.20 1.59 7.62 -2.39 -0.02 1.57 16 37 H 0.22 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.19 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.07 0.80 7.49 -2.39 -0.02 0.78 16 40 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.04 0.89 7.60 -2.38 -0.02 0.87 16 47 H 0.03 1.64 4.49 -2.39 -0.01 1.63 16 48 H 0.05 1.92 6.98 -2.39 -0.02 1.90 16 Total: -1.00 -110.09 383.32 -2.13 -112.22 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: 0.05 Total: 6.15 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.67 Total: -9.92 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -3.88 Total: -118.90 kcal Atomic # 8 Polarization: -102.65 SS G_CDS: -4.47 Total: -107.12 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 1.67 Total: 53.16 kcal Atomic # 16 Polarization: 64.59 SS G_CDS: -0.18 Total: 64.41 kcal Total: -110.09 -2.13 -112.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690041460.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.303 kcal (2) G-P(sol) polarization free energy of solvation -110.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -112.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds