Wall clock time and date at job start Wed Apr 1 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21274 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99587 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.46756 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.47101 * 179.97438 * 18 17 15 20 20 N 1.30106 * 124.95301 * 305.02414 * 19 18 17 21 21 C 1.35780 * 109.64625 * 179.97438 * 20 19 18 22 22 C 1.39741 * 133.60618 * 179.97438 * 21 20 19 23 23 C 1.36607 * 119.88809 * 179.97438 * 22 21 20 24 24 C 1.38775 * 120.67127 * 359.97438 * 23 22 21 25 25 C 1.37854 * 120.44703 * 359.97438 * 24 23 22 26 26 C 1.38839 * 119.69261 * 0.04214 * 25 24 23 27 27 N 1.36039 * 124.95109 * 124.71591 * 19 18 17 28 28 H 0.97005 * 126.34911 * 0.02562 * 27 19 18 29 29 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 30 30 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 31 31 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 32 32 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 33 33 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 34 34 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 35 35 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 36 36 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 37 37 H 1.08998 * 109.47307 * 300.00221 * 17 15 14 38 38 H 1.08993 * 109.47428 * 60.00427 * 17 15 14 39 39 H 1.08998 * 109.46930 * 299.99885 * 18 17 15 40 40 H 1.08997 * 109.47740 * 59.99834 * 18 17 15 41 41 H 1.08003 * 120.05356 * 0.02622 * 22 21 20 42 42 H 1.08000 * 119.66440 * 180.02562 * 23 22 21 43 43 H 1.07995 * 119.77746 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.15209 * 180.02562 * 25 24 23 45 45 H 1.09001 * 113.46935 * 321.86111 * 29 9 7 46 46 H 1.09004 * 113.46453 * 92.23850 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0123 -0.9440 4.4398 17 6 7.4671 0.8990 4.2022 18 6 7.5284 0.8100 5.7284 19 6 8.4386 1.8880 6.2582 20 7 9.6732 2.0687 5.8898 21 6 10.2003 3.1243 6.5617 22 6 11.4539 3.7417 6.5560 23 6 11.6874 4.8159 7.3670 24 6 10.6904 5.3041 8.1997 25 6 9.4459 4.7116 8.2212 26 6 9.1903 3.6186 7.4042 27 7 8.0872 2.8176 7.1872 28 1 7.2220 2.9017 7.6178 29 6 4.4122 -2.2290 -0.3436 30 1 -0.4850 -0.8367 0.0748 31 1 4.6585 0.1322 -1.2473 32 1 4.2790 0.6435 0.4530 33 1 7.3158 -0.6161 0.0950 34 1 4.4664 -1.2102 2.2427 35 1 5.8529 -2.3197 2.1221 36 1 6.7868 0.3168 1.7318 37 1 8.4673 0.7654 3.7903 38 1 7.0814 1.8757 3.9101 39 1 6.5282 0.9435 6.1405 40 1 7.9143 -0.1666 6.0203 41 1 12.2366 3.3707 5.9109 42 1 12.6575 5.2906 7.3593 43 1 10.8906 6.1545 8.8346 44 1 8.6733 5.0958 8.8709 45 1 4.2424 -3.1307 0.2449 46 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699915743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:00 Heat of formation + Delta-G solvation = 48.072759 kcal Electronic energy + Delta-G solvation = -28779.266490 eV Core-core repulsion = 24671.701348 eV Total energy + Delta-G solvation = -4107.565143 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.49474 -40.16083 -39.05883 -37.75480 -35.44148 -34.22999 -33.84316 -33.39493 -32.31996 -30.35007 -29.56956 -28.50329 -26.71499 -25.59360 -24.88924 -22.75041 -22.38178 -21.81325 -21.05530 -20.43555 -19.29634 -18.25042 -17.91466 -17.54649 -17.45768 -16.67878 -16.14769 -15.77570 -15.67425 -15.50311 -15.04089 -14.68890 -14.48354 -14.29418 -14.24976 -13.69283 -13.62820 -13.21369 -13.10420 -12.93747 -12.60848 -12.40363 -12.22129 -12.13758 -11.97117 -11.89832 -11.72515 -11.49748 -11.11100 -11.03134 -10.75935 -10.42190 -10.30356 -10.17371 -9.95190 -9.29130 -9.17693 -8.95289 -8.94725 -8.74062 -8.47068 -7.25864 -6.39728 -3.31979 0.58557 1.16042 2.36895 2.48084 2.58230 3.08616 3.30995 3.36055 3.52971 3.56794 3.73550 4.17729 4.23286 4.51279 4.51668 4.57781 4.65846 4.70903 4.72977 4.73403 4.85784 4.95271 5.01196 5.08064 5.11295 5.24915 5.36289 5.42420 5.52053 5.63316 5.66040 5.71053 5.99386 6.03626 6.05850 6.15519 6.16248 6.18232 6.20974 6.24578 6.37516 6.51142 6.56504 6.94037 6.96630 7.36333 7.53672 7.73225 8.13842 8.16722 8.89644 9.40843 10.24626 11.12983 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.002102 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.432774 B =13319.422310 C =14021.671161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.023 4.023 3 Si 1.070 2.930 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.304 4.304 8 H 0.086 0.914 9 N -0.620 5.620 10 C 0.079 3.921 11 C 0.065 3.935 12 O -0.546 6.546 13 C 0.123 3.877 14 N -0.728 5.728 15 C 0.516 3.484 16 O -0.538 6.538 17 C -0.132 4.132 18 C -0.027 4.027 19 C 0.292 3.708 20 N -0.489 5.489 21 C 0.048 3.952 22 C -0.065 4.065 23 C -0.129 4.129 24 C -0.104 4.104 25 C -0.111 4.111 26 C 0.044 3.956 27 N -0.597 5.597 28 H 0.424 0.576 29 C 0.144 3.856 30 H 0.262 0.738 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.365 0.635 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.055 0.945 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.513 9.217 15.265 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.222 4.222 3 Si 0.903 3.097 4 H -0.221 1.221 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.430 4.430 8 H 0.104 0.896 9 N -0.350 5.350 10 C -0.047 4.047 11 C 0.022 3.978 12 O -0.349 6.349 13 C 0.000 4.000 14 N -0.381 5.381 15 C 0.302 3.698 16 O -0.415 6.415 17 C -0.173 4.173 18 C -0.066 4.066 19 C 0.025 3.975 20 N -0.210 5.210 21 C -0.070 4.070 22 C -0.084 4.084 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.066 4.066 27 N -0.208 5.208 28 H 0.263 0.737 29 C 0.016 3.984 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.212 0.788 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.231 0.769 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.140 0.860 45 H 0.073 0.927 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 22.848 9.354 14.775 28.773 hybrid contribution -0.314 -0.365 0.815 0.947 sum 22.534 8.989 15.590 28.839 Atomic orbital electron populations 1.70913 1.05255 1.29604 1.51483 1.25740 0.96473 1.00949 0.99071 0.83690 0.73896 0.76084 0.76001 1.22141 1.22310 1.21303 1.20095 0.77953 0.95939 1.48977 0.89599 1.45680 1.02110 1.01727 1.85467 1.23462 0.88118 0.93993 0.99139 1.23716 0.82142 1.01149 0.90776 1.86615 1.23253 1.66175 1.58883 1.21585 0.95917 0.90733 0.91778 1.45925 1.49412 1.35311 1.07424 1.20459 0.81841 0.85366 0.82102 1.90732 1.49961 1.44329 1.56491 1.21549 1.01549 0.98977 0.95230 1.19907 0.97217 0.95028 0.94472 1.23611 0.92388 0.92060 0.89431 1.70404 1.06523 1.17606 1.26456 1.19120 0.94983 0.95617 0.97295 1.20052 0.94077 0.95180 0.99130 1.20665 0.99723 0.97160 0.97390 1.20894 0.92291 0.99868 0.99340 1.19987 0.98243 0.94996 0.99963 1.18915 0.88628 0.96855 1.02190 1.43123 1.13481 1.26893 1.37332 0.73682 1.22275 0.84985 0.92839 0.98255 0.92751 0.92706 0.93034 0.78838 0.88679 0.90565 0.76912 0.87188 0.88530 0.88801 0.87435 0.85292 0.85338 0.85280 0.85952 0.92711 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.10 13.70 55.49 0.76 -28.34 16 2 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 3 Si 1.07 26.32 25.13 -169.99 -4.27 22.05 16 4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -6.79 6.63 56.52 0.37 -6.42 16 6 H -0.29 -6.55 6.13 56.52 0.35 -6.21 16 7 C -0.30 -8.60 11.08 -15.06 -0.17 -8.77 16 8 H 0.09 2.56 8.05 -52.49 -0.42 2.14 16 9 N -0.62 -14.86 3.47 -184.61 -0.64 -15.50 16 10 C 0.08 1.60 5.12 -8.39 -0.04 1.56 16 11 C 0.06 1.08 1.74 -89.98 -0.16 0.92 16 12 O -0.55 -7.75 13.56 -35.23 -0.48 -8.23 16 13 C 0.12 1.94 5.33 -4.04 -0.02 1.92 16 14 N -0.73 -8.93 5.32 -60.30 -0.32 -9.25 16 15 C 0.52 6.49 7.83 -10.99 -0.09 6.40 16 16 O -0.54 -8.83 15.98 5.56 0.09 -8.74 16 17 C -0.13 -1.17 5.64 -27.88 -0.16 -1.33 16 18 C -0.03 -0.23 5.13 -27.88 -0.14 -0.38 16 19 C 0.29 2.84 7.37 -154.82 -1.14 1.70 16 20 N -0.49 -5.73 11.21 -8.23 -0.09 -5.82 16 21 C 0.05 0.54 7.23 -84.70 -0.61 -0.08 16 22 C -0.06 -0.59 10.05 -39.61 -0.40 -0.98 16 23 C -0.13 -0.90 9.96 -39.97 -0.40 -1.30 16 24 C -0.10 -0.69 10.03 -39.52 -0.40 -1.09 16 25 C -0.11 -0.84 10.07 -39.50 -0.40 -1.24 16 26 C 0.04 0.42 7.30 -83.99 -0.61 -0.19 16 27 N -0.60 -4.96 6.23 -8.00 -0.05 -5.01 16 28 H 0.42 2.26 8.96 -40.82 -0.37 1.89 16 29 C 0.14 2.82 8.10 -8.52 -0.07 2.75 16 30 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 31 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 32 H 0.05 1.06 4.65 -51.93 -0.24 0.82 16 33 H 0.36 3.53 7.50 45.56 0.34 3.87 16 34 H 0.10 1.84 7.94 -51.93 -0.41 1.43 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.40 3.64 7.24 -40.82 -0.30 3.34 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.11 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -37.10 381.86 -9.82 -46.92 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.68 Total: 7.04 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -4.90 Total: -0.88 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.34 Total: -63.92 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.39 Total: -16.96 kcal Atomic # 14 Polarization: 26.32 SS G_CDS: -4.27 Total: 22.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.10 -9.82 -46.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699915743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.990 kcal (2) G-P(sol) polarization free energy of solvation -37.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds