Wall clock time and date at job start Wed Apr 1 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21274 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99587 * 179.97438 * 15 14 13 18 18 C 1.53000 * 109.46756 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.47101 * 179.97438 * 18 17 15 20 20 N 1.30106 * 124.95301 * 305.02414 * 19 18 17 21 21 C 1.35780 * 109.64625 * 179.97438 * 20 19 18 22 22 C 1.39741 * 133.60618 * 179.97438 * 21 20 19 23 23 C 1.36607 * 119.88809 * 179.97438 * 22 21 20 24 24 C 1.38775 * 120.67127 * 359.97438 * 23 22 21 25 25 C 1.37854 * 120.44703 * 359.97438 * 24 23 22 26 26 C 1.38839 * 119.69261 * 0.04214 * 25 24 23 27 27 N 1.36039 * 124.95109 * 124.71591 * 19 18 17 28 28 H 0.97005 * 126.34911 * 0.02562 * 27 19 18 29 29 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 30 30 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 31 31 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 32 32 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 33 33 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 34 34 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 35 35 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 36 36 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 37 37 H 1.08998 * 109.47307 * 300.00221 * 17 15 14 38 38 H 1.08993 * 109.47428 * 60.00427 * 17 15 14 39 39 H 1.08998 * 109.46930 * 299.99885 * 18 17 15 40 40 H 1.08997 * 109.47740 * 59.99834 * 18 17 15 41 41 H 1.08003 * 120.05356 * 0.02622 * 22 21 20 42 42 H 1.08000 * 119.66440 * 180.02562 * 23 22 21 43 43 H 1.07995 * 119.77746 * 180.02562 * 24 23 22 44 44 H 1.08000 * 120.15209 * 180.02562 * 25 24 23 45 45 H 1.09001 * 113.46935 * 321.86111 * 29 9 7 46 46 H 1.09004 * 113.46453 * 92.23850 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0123 -0.9440 4.4398 17 6 7.4671 0.8990 4.2022 18 6 7.5284 0.8100 5.7284 19 6 8.4386 1.8880 6.2582 20 7 9.6732 2.0687 5.8898 21 6 10.2003 3.1243 6.5617 22 6 11.4539 3.7417 6.5560 23 6 11.6874 4.8159 7.3670 24 6 10.6904 5.3041 8.1997 25 6 9.4459 4.7116 8.2212 26 6 9.1903 3.6186 7.4042 27 7 8.0872 2.8176 7.1872 28 1 7.2220 2.9017 7.6178 29 6 4.4122 -2.2290 -0.3436 30 1 -0.4850 -0.8367 0.0748 31 1 4.6585 0.1322 -1.2473 32 1 4.2790 0.6435 0.4530 33 1 7.3158 -0.6161 0.0950 34 1 4.4664 -1.2102 2.2427 35 1 5.8529 -2.3197 2.1221 36 1 6.7868 0.3168 1.7318 37 1 8.4673 0.7654 3.7903 38 1 7.0814 1.8757 3.9101 39 1 6.5282 0.9435 6.1405 40 1 7.9143 -0.1666 6.0203 41 1 12.2366 3.3707 5.9109 42 1 12.6575 5.2906 7.3593 43 1 10.8906 6.1545 8.8346 44 1 8.6733 5.0958 8.8709 45 1 4.2424 -3.1307 0.2449 46 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699915743.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:59 Heat of formation + Delta-G solvation = 18.148242 kcal Electronic energy + Delta-G solvation = -28780.564115 eV Core-core repulsion = 24671.701348 eV Total energy + Delta-G solvation = -4108.862767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.13374 -41.44364 -40.33585 -38.33379 -36.87818 -35.35309 -34.58854 -34.43230 -34.06179 -30.93495 -30.58105 -29.80218 -28.08809 -27.20662 -25.87449 -23.63819 -23.32774 -22.96911 -21.89180 -21.36692 -20.87103 -19.55756 -19.01552 -18.75874 -18.17944 -17.84853 -17.38138 -16.91696 -16.61307 -16.31607 -16.11023 -15.88423 -15.66644 -15.25267 -15.14201 -15.01933 -14.84959 -14.64120 -14.28962 -13.96494 -13.66039 -13.58618 -13.42545 -13.30811 -12.88011 -12.72825 -12.58917 -12.52646 -12.45809 -12.17628 -12.10804 -11.80951 -11.70170 -11.39128 -11.07697 -11.00305 -10.98505 -10.61523 -10.20602 -9.33902 -9.27379 -9.09515 -8.69909 -5.52950 -0.01060 0.57291 1.33117 1.44976 1.58555 1.63993 1.68546 1.84328 2.13572 2.50806 2.75148 2.92446 3.05867 3.06817 3.22836 3.30824 3.56591 3.67555 3.77897 3.94097 4.06144 4.18578 4.22737 4.26563 4.43641 4.44186 4.47391 4.53457 4.59132 4.60548 4.63812 4.71496 4.79792 4.80823 4.90848 4.98528 5.06458 5.12428 5.16090 5.26818 5.46960 5.57144 5.61029 5.90201 5.97743 6.38836 6.42097 6.64524 6.72542 6.86293 7.17433 7.26135 8.18438 8.85665 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.015785 B = 0.002102 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.432774 B =13319.422310 C =14021.671161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.086 4.086 3 Si 1.109 2.891 4 H -0.305 1.305 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.289 4.289 8 H 0.053 0.947 9 N -0.650 5.650 10 C 0.072 3.928 11 C 0.104 3.896 12 O -0.540 6.540 13 C 0.134 3.866 14 N -0.718 5.718 15 C 0.517 3.483 16 O -0.580 6.580 17 C -0.119 4.119 18 C -0.022 4.022 19 C 0.288 3.712 20 N -0.517 5.517 21 C 0.013 3.987 22 C -0.086 4.086 23 C -0.125 4.125 24 C -0.102 4.102 25 C -0.118 4.118 26 C 0.029 3.971 27 N -0.590 5.590 28 H 0.436 0.564 29 C 0.133 3.867 30 H 0.247 0.753 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.390 0.610 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.415 0.585 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.132 0.868 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.144 0.856 45 H 0.059 0.941 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.931 11.445 15.959 33.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.277 4.277 3 Si 0.934 3.066 4 H -0.234 1.234 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.416 4.416 8 H 0.071 0.929 9 N -0.381 5.381 10 C -0.053 4.053 11 C 0.062 3.938 12 O -0.347 6.347 13 C 0.009 3.991 14 N -0.373 5.373 15 C 0.305 3.695 16 O -0.459 6.459 17 C -0.159 4.159 18 C -0.061 4.061 19 C 0.021 3.979 20 N -0.239 5.239 21 C -0.105 4.105 22 C -0.105 4.105 23 C -0.145 4.145 24 C -0.121 4.121 25 C -0.139 4.139 26 C -0.081 4.081 27 N -0.202 5.202 28 H 0.277 0.723 29 C 0.007 3.993 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.241 0.759 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.143 0.857 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.150 0.850 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.162 0.838 45 H 0.077 0.923 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 26.348 11.582 15.461 32.671 hybrid contribution -1.258 -1.141 0.632 1.813 sum 25.090 10.440 16.093 31.583 Atomic orbital electron populations 1.71023 1.06634 1.28733 1.54910 1.27134 0.96516 1.04714 0.99369 0.83273 0.73429 0.71744 0.78110 1.23366 1.19723 1.18191 1.19924 0.80441 0.94579 1.46643 0.92926 1.45656 1.01482 1.05022 1.85891 1.23664 0.87646 0.94265 0.99705 1.22909 0.82662 0.97573 0.90705 1.86580 1.22195 1.67041 1.58851 1.21237 0.94781 0.92166 0.90935 1.45784 1.48712 1.34863 1.07895 1.21076 0.81420 0.85364 0.81650 1.90723 1.51651 1.46057 1.57479 1.21497 1.01235 0.98089 0.95082 1.19853 0.97279 0.94500 0.94512 1.23621 0.92131 0.92368 0.89807 1.70328 1.07453 1.18478 1.27618 1.19534 0.96285 0.96291 0.98418 1.20299 0.93800 0.96186 1.00252 1.21037 1.01011 0.96175 0.96252 1.21335 0.91641 1.00189 0.98960 1.20357 0.99364 0.94386 0.99809 1.19227 0.88627 0.97628 1.02624 1.43075 1.13877 1.26325 1.36968 0.72277 1.22481 0.84671 0.93045 0.99098 0.94402 0.92014 0.92829 0.75912 0.92460 0.90075 0.74755 0.85744 0.86826 0.88281 0.88121 0.84971 0.82714 0.82279 0.83838 0.92290 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.73 13.70 21.65 0.30 -62.43 16 2 C -0.09 -5.12 5.50 84.86 0.47 -4.65 16 3 Si 1.11 52.47 25.13 68.60 1.72 54.19 16 4 H -0.31 -14.94 7.11 99.48 0.71 -14.24 16 5 H -0.27 -11.59 6.63 99.48 0.66 -10.93 16 6 H -0.26 -10.82 6.13 99.48 0.61 -10.21 16 7 C -0.29 -16.75 11.08 84.03 0.93 -15.82 16 8 H 0.05 3.31 8.05 -2.91 -0.02 3.28 16 9 N -0.65 -30.82 3.47 -738.47 -2.56 -33.38 16 10 C 0.07 2.74 5.12 83.26 0.43 3.17 16 11 C 0.10 3.20 1.74 -10.38 -0.02 3.18 16 12 O -0.54 -13.01 13.56 -148.98 -2.02 -15.03 16 13 C 0.13 3.96 5.33 86.38 0.46 4.42 16 14 N -0.72 -15.61 5.32 -463.07 -2.46 -18.07 16 15 C 0.52 11.98 7.83 87.66 0.69 12.66 16 16 O -0.58 -18.57 15.98 -3.01 -0.05 -18.61 16 17 C -0.12 -1.83 5.64 29.85 0.17 -1.66 16 18 C -0.02 -0.36 5.13 29.85 0.15 -0.21 16 19 C 0.29 5.32 7.37 137.92 1.02 6.34 16 20 N -0.52 -11.78 11.21 -179.97 -2.02 -13.80 16 21 C 0.01 0.27 7.23 39.45 0.29 0.56 16 22 C -0.09 -1.47 10.05 22.25 0.22 -1.24 16 23 C -0.12 -1.46 9.96 22.02 0.22 -1.24 16 24 C -0.10 -1.05 10.03 22.31 0.22 -0.83 16 25 C -0.12 -1.53 10.07 22.32 0.22 -1.30 16 26 C 0.03 0.52 7.30 38.86 0.28 0.81 16 27 N -0.59 -9.12 6.23 -179.23 -1.12 -10.24 16 28 H 0.44 4.07 8.96 -92.70 -0.83 3.24 16 29 C 0.13 5.05 8.10 83.17 0.67 5.72 16 30 H 0.25 16.09 8.73 -92.71 -0.81 15.28 16 31 H 0.06 2.31 7.71 -2.39 -0.02 2.29 16 32 H 0.05 2.03 4.65 -2.39 -0.01 2.02 16 33 H 0.39 5.53 7.50 -74.06 -0.56 4.98 16 34 H 0.06 2.19 7.94 -2.39 -0.02 2.17 16 35 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.41 5.91 7.24 -92.71 -0.67 5.24 16 37 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.10 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.10 1.79 8.10 -2.39 -0.02 1.77 16 41 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 43 H 0.16 0.64 8.06 -2.91 -0.02 0.61 16 44 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 45 H 0.06 2.17 8.12 -2.39 -0.02 2.15 16 46 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -83.85 381.86 -2.98 -86.83 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -1.19 Total: 20.64 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: 6.43 Total: 9.90 kcal Atomic # 7 Polarization: -130.05 SS G_CDS: -7.87 Total: -137.92 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -2.07 Total: -33.65 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 1.72 Total: 54.19 kcal Total: -83.85 -2.98 -86.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699915743.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.975 kcal (2) G-P(sol) polarization free energy of solvation -83.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds