Wall clock time and date at job start Wed Apr 1 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47068 * 274.98627 * 3 2 1 5 5 H 1.48500 * 109.47027 * 34.99052 * 3 2 1 6 6 H 1.48500 * 109.46717 * 154.99020 * 3 2 1 7 7 C 1.38810 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00807 * 209.53004 * 7 2 1 9 9 N 1.36945 * 119.99711 * 29.52294 * 7 2 1 10 10 C 1.46998 * 120.61299 * 25.00726 * 9 7 2 11 11 C 1.53186 * 108.74114 * 126.38337 * 10 9 7 12 12 C 1.53041 * 109.34081 * 54.61898 * 11 10 9 13 13 C 1.53034 * 109.53782 * 298.62081 * 12 11 10 14 14 C 1.53006 * 109.50020 * 181.34613 * 13 12 11 15 15 O 1.42894 * 109.47035 * 174.64301 * 14 13 12 16 16 N 1.46504 * 109.49955 * 301.41170 * 13 12 11 17 17 C 1.34777 * 119.99763 * 297.05640 * 16 13 12 18 18 O 1.21611 * 119.99888 * 4.74775 * 17 16 13 19 19 C 1.47383 * 119.99971 * 184.74861 * 17 16 13 20 20 N 1.31574 * 126.82479 * 359.67986 * 19 17 16 21 21 N 1.28381 * 111.96554 * 179.87365 * 20 19 17 22 22 H 0.97007 * 124.36552 * 180.21114 * 21 20 19 23 23 C 1.37045 * 111.25719 * 0.41429 * 21 20 19 24 24 C 1.39124 * 134.72336 * 179.78551 * 23 21 20 25 25 C 1.36684 * 119.78591 * 179.97438 * 24 23 21 26 26 C 1.38897 * 120.89114 * 359.97438 * 25 24 23 27 27 C 1.36718 * 120.52681 * 0.06672 * 26 25 24 28 28 C 1.39196 * 119.50693 * 359.91782 * 27 26 25 29 29 C 1.46918 * 120.63184 * 204.97544 * 9 7 2 30 30 H 0.96999 * 119.99645 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.62848 * 6.58790 * 10 9 7 32 32 H 1.09002 * 109.57844 * 246.14615 * 10 9 7 33 33 H 1.08997 * 109.50000 * 294.65423 * 11 10 9 34 34 H 1.09000 * 109.49830 * 174.58454 * 11 10 9 35 35 H 1.09008 * 109.45559 * 58.63686 * 12 11 10 36 36 H 1.08995 * 109.46264 * 178.60871 * 12 11 10 37 37 H 1.08997 * 109.46712 * 294.64593 * 14 13 12 38 38 H 1.08998 * 109.46651 * 54.63849 * 14 13 12 39 39 H 0.96701 * 113.99995 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99862 * 117.04870 * 16 13 12 41 41 H 1.08004 * 120.11178 * 359.94709 * 24 23 21 42 42 H 1.08003 * 119.55454 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.73764 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.24878 * 179.97438 * 27 26 25 45 45 H 1.08999 * 109.58451 * 113.84472 * 29 9 7 46 46 H 1.09006 * 109.58949 * 353.42461 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6200 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0104 -1.2021 0.0005 8 1 2.9851 -1.2627 0.4615 9 7 1.4590 -2.3113 -0.5834 10 6 0.4574 -2.1757 -1.6507 11 6 0.9178 -2.9896 -2.8641 12 6 1.1866 -4.4334 -2.4335 13 6 2.3022 -4.4559 -1.3861 14 6 2.5933 -5.9023 -0.9810 15 8 3.7166 -5.9328 -0.0983 16 7 3.5130 -3.8524 -1.9483 17 6 4.1194 -4.4214 -3.0089 18 8 3.6151 -5.3850 -3.5530 19 6 5.3938 -3.8758 -3.5094 20 7 6.0514 -2.8418 -3.0301 21 7 7.1333 -2.6160 -3.6834 22 1 7.7555 -1.8998 -3.4813 23 6 7.2933 -3.5147 -4.7056 24 6 8.2546 -3.7157 -5.6909 25 6 8.1071 -4.7392 -6.5847 26 6 7.0078 -5.5860 -6.5242 27 6 6.0479 -5.4104 -5.5666 28 6 6.1790 -4.3743 -4.6463 29 6 1.8578 -3.6590 -0.1555 30 1 -0.4849 0.8401 0.0004 31 1 0.3597 -1.1266 -1.9301 32 1 -0.5031 -2.5537 -1.3004 33 1 1.8317 -2.5545 -3.2684 34 1 0.1399 -2.9765 -3.6274 35 1 0.2789 -4.8599 -2.0065 36 1 1.4907 -5.0202 -3.3002 37 1 1.7226 -6.3203 -0.4757 38 1 2.8143 -6.4914 -1.8710 39 1 3.9588 -6.8203 0.1996 40 1 3.8782 -3.0434 -1.5572 41 1 9.1145 -3.0649 -5.7497 42 1 8.8559 -4.8921 -7.3479 43 1 6.9101 -6.3891 -7.2396 44 1 5.1947 -6.0712 -5.5239 45 1 1.0115 -4.1578 0.3168 46 1 2.6841 -3.5883 0.5520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700006748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:34 Heat of formation + Delta-G solvation = 31.501743 kcal Electronic energy + Delta-G solvation = -31235.822486 eV Core-core repulsion = 27127.538770 eV Total energy + Delta-G solvation = -4108.283716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.48497 -39.88349 -37.84906 -37.34000 -36.00930 -33.82343 -32.75613 -32.05796 -30.51289 -30.30255 -30.28165 -29.31805 -25.42736 -25.04502 -24.26126 -23.27880 -22.43666 -22.13924 -20.89243 -19.86956 -18.68088 -18.27413 -17.39981 -16.93954 -16.69223 -16.50238 -15.80777 -15.38688 -15.17139 -14.78055 -14.63599 -14.31033 -14.13226 -13.99931 -13.84938 -13.37445 -13.28516 -12.86147 -12.63262 -12.37790 -12.29864 -12.16205 -11.88663 -11.54238 -11.33485 -11.16878 -11.08090 -10.93192 -10.70835 -10.35682 -10.21847 -10.19081 -10.08266 -9.78556 -9.72322 -9.57096 -9.14957 -8.89383 -8.49270 -8.39879 -8.15429 -6.77087 -5.84068 -3.15325 0.76885 1.24859 1.95859 2.64158 3.38838 3.45622 3.47603 3.48411 3.49536 3.79790 4.34124 4.43844 4.50022 4.54123 4.73779 4.82527 5.06241 5.25652 5.26447 5.34805 5.40626 5.49602 5.59599 5.66027 5.70353 5.80770 5.82918 5.97079 6.04636 6.09838 6.28382 6.31425 6.38254 6.42166 6.49106 6.65309 6.67202 6.71363 6.82141 6.88506 6.92578 7.10615 7.33034 7.54900 7.73389 7.83086 7.90622 8.14198 8.38171 8.63680 9.16472 9.82985 10.39295 11.24416 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003871 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.223113 B = 7231.062485 C = 8581.326485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.011 3.989 3 Si 0.888 3.112 4 H -0.289 1.289 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.261 4.261 8 H 0.068 0.932 9 N -0.587 5.587 10 C 0.170 3.830 11 C -0.136 4.136 12 C -0.120 4.120 13 C 0.166 3.834 14 C 0.066 3.934 15 O -0.564 6.564 16 N -0.670 5.670 17 C 0.606 3.394 18 O -0.545 6.545 19 C 0.014 3.986 20 N -0.199 5.199 21 N -0.418 5.418 22 H 0.446 0.554 23 C 0.062 3.938 24 C -0.122 4.122 25 C -0.086 4.086 26 C -0.147 4.147 27 C -0.039 4.039 28 C -0.109 4.109 29 C 0.148 3.852 30 H 0.253 0.747 31 H 0.077 0.923 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.370 0.630 40 H 0.414 0.586 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.138 0.862 45 H 0.033 0.967 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.753 -11.287 -10.614 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.189 4.189 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.390 4.390 8 H 0.086 0.914 9 N -0.310 5.310 10 C 0.044 3.956 11 C -0.175 4.175 12 C -0.158 4.158 13 C 0.078 3.922 14 C -0.014 4.014 15 O -0.368 6.368 16 N -0.320 5.320 17 C 0.390 3.610 18 O -0.422 6.422 19 C -0.158 4.158 20 N -0.028 5.028 21 N -0.137 5.137 22 H 0.291 0.709 23 C -0.051 4.051 24 C -0.144 4.144 25 C -0.107 4.107 26 C -0.166 4.166 27 C -0.059 4.059 28 C -0.117 4.117 29 C 0.021 3.979 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.215 0.785 40 H 0.250 0.750 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.156 0.844 45 H 0.051 0.949 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.154 -10.346 -10.169 19.582 hybrid contribution 1.000 0.668 -0.225 1.224 sum 14.154 -9.678 -10.394 20.050 Atomic orbital electron populations 1.70221 1.05468 1.25697 1.51502 1.24837 0.94818 0.98486 1.00806 0.86490 0.79801 0.84349 0.77588 1.21567 1.22018 1.20265 1.19120 0.98511 0.87146 1.34251 0.91378 1.44140 1.47989 0.99908 1.38940 1.20763 0.90151 0.99213 0.85486 1.22068 1.00585 0.95230 0.99627 1.21769 0.96784 0.98579 0.98705 1.21045 0.84241 0.91068 0.95838 1.22641 0.88200 0.97447 0.93071 1.86528 1.50320 1.32921 1.67023 1.45656 1.26836 1.29185 1.30318 1.16590 0.81426 0.82792 0.80237 1.90673 1.64859 1.27910 1.58799 1.23008 0.98581 0.96324 0.97919 1.73046 0.95857 1.15609 1.18313 1.43085 1.18963 1.27776 1.23838 0.70900 1.19244 0.98392 0.93642 0.93814 1.19752 0.98452 1.00905 0.95280 1.20707 0.97887 0.94168 0.97926 1.20820 0.94964 1.00929 0.99877 1.20417 0.98687 0.95035 0.91801 1.19462 0.94948 0.99005 0.98263 1.21085 0.98088 0.86847 0.91854 0.93700 0.90504 0.96239 0.92667 0.93133 0.91903 0.90878 0.93365 0.91798 0.78476 0.74975 0.85590 0.85328 0.85419 0.84369 0.94935 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 11.85 55.49 0.66 -24.85 16 2 C 0.01 0.29 4.57 -17.43 -0.08 0.21 16 3 Si 0.89 21.49 29.64 -169.99 -5.04 16.45 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.26 -7.00 9.52 -15.06 -0.14 -7.14 16 8 H 0.07 1.81 7.97 -52.49 -0.42 1.39 16 9 N -0.59 -14.24 2.86 -172.26 -0.49 -14.73 16 10 C 0.17 3.99 5.44 -3.67 -0.02 3.97 16 11 C -0.14 -2.70 5.93 -26.61 -0.16 -2.86 16 12 C -0.12 -2.16 4.52 -26.69 -0.12 -2.28 16 13 C 0.17 3.01 0.45 -131.69 -0.06 2.95 16 14 C 0.07 1.03 5.59 37.16 0.21 1.24 16 15 O -0.56 -8.59 13.08 -35.23 -0.46 -9.06 16 16 N -0.67 -12.40 3.94 -48.57 -0.19 -12.59 16 17 C 0.61 10.94 7.22 -12.54 -0.09 10.85 16 18 O -0.55 -10.21 12.71 5.27 0.07 -10.14 16 19 C 0.01 0.23 7.32 -80.76 -0.59 -0.36 16 20 N -0.20 -3.11 11.81 34.46 0.41 -2.70 16 21 N -0.42 -5.05 6.85 32.34 0.22 -4.83 16 22 H 0.45 3.67 8.96 -190.49 -1.71 1.97 16 23 C 0.06 0.77 7.38 -84.22 -0.62 0.14 16 24 C -0.12 -1.14 10.03 -39.81 -0.40 -1.54 16 25 C -0.09 -0.74 9.96 -39.90 -0.40 -1.14 16 26 C -0.15 -1.43 9.98 -39.89 -0.40 -1.83 16 27 C -0.04 -0.50 9.87 -39.78 -0.39 -0.89 16 28 C -0.11 -1.60 6.34 -105.05 -0.67 -2.27 16 29 C 0.15 3.09 5.08 -3.71 -0.02 3.08 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.08 2.02 6.24 -51.93 -0.32 1.70 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 1.16 7.53 -51.93 -0.39 0.77 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 36 H 0.07 1.33 6.26 -51.93 -0.33 1.00 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.03 6.30 -51.93 -0.33 0.70 16 39 H 0.37 3.83 9.12 45.56 0.42 4.24 16 40 H 0.41 8.19 8.17 -40.82 -0.33 7.85 16 41 H 0.13 0.81 8.06 -52.48 -0.42 0.38 16 42 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 44 H 0.14 1.78 7.65 -52.49 -0.40 1.38 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.47 7.78 -51.93 -0.40 1.07 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -32.74 372.43 -9.90 -42.64 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -6.73 Total: 12.07 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -3.95 Total: 2.13 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.60 Total: -59.70 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.39 Total: -19.20 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.04 Total: 16.45 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.74 -9.90 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700006748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.141 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds