Wall clock time and date at job start Wed Apr 1 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47068 * 274.98627 * 3 2 1 5 5 H 1.48500 * 109.47027 * 34.99052 * 3 2 1 6 6 H 1.48500 * 109.46717 * 154.99020 * 3 2 1 7 7 C 1.38810 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00807 * 209.53004 * 7 2 1 9 9 N 1.36945 * 119.99711 * 29.52294 * 7 2 1 10 10 C 1.46998 * 120.61299 * 25.00726 * 9 7 2 11 11 C 1.53186 * 108.74114 * 126.38337 * 10 9 7 12 12 C 1.53041 * 109.34081 * 54.61898 * 11 10 9 13 13 C 1.53034 * 109.53782 * 298.62081 * 12 11 10 14 14 C 1.53006 * 109.50020 * 181.34613 * 13 12 11 15 15 O 1.42894 * 109.47035 * 174.64301 * 14 13 12 16 16 N 1.46504 * 109.49955 * 301.41170 * 13 12 11 17 17 C 1.34777 * 119.99763 * 297.05640 * 16 13 12 18 18 O 1.21611 * 119.99888 * 4.74775 * 17 16 13 19 19 C 1.47383 * 119.99971 * 184.74861 * 17 16 13 20 20 N 1.31574 * 126.82479 * 359.67986 * 19 17 16 21 21 N 1.28381 * 111.96554 * 179.87365 * 20 19 17 22 22 H 0.97007 * 124.36552 * 180.21114 * 21 20 19 23 23 C 1.37045 * 111.25719 * 0.41429 * 21 20 19 24 24 C 1.39124 * 134.72336 * 179.78551 * 23 21 20 25 25 C 1.36684 * 119.78591 * 179.97438 * 24 23 21 26 26 C 1.38897 * 120.89114 * 359.97438 * 25 24 23 27 27 C 1.36718 * 120.52681 * 0.06672 * 26 25 24 28 28 C 1.39196 * 119.50693 * 359.91782 * 27 26 25 29 29 C 1.46918 * 120.63184 * 204.97544 * 9 7 2 30 30 H 0.96999 * 119.99645 * 359.97438 * 1 2 3 31 31 H 1.09005 * 109.62848 * 6.58790 * 10 9 7 32 32 H 1.09002 * 109.57844 * 246.14615 * 10 9 7 33 33 H 1.08997 * 109.50000 * 294.65423 * 11 10 9 34 34 H 1.09000 * 109.49830 * 174.58454 * 11 10 9 35 35 H 1.09008 * 109.45559 * 58.63686 * 12 11 10 36 36 H 1.08995 * 109.46264 * 178.60871 * 12 11 10 37 37 H 1.08997 * 109.46712 * 294.64593 * 14 13 12 38 38 H 1.08998 * 109.46651 * 54.63849 * 14 13 12 39 39 H 0.96701 * 113.99995 * 180.02562 * 15 14 13 40 40 H 0.97000 * 119.99862 * 117.04870 * 16 13 12 41 41 H 1.08004 * 120.11178 * 359.94709 * 24 23 21 42 42 H 1.08003 * 119.55454 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.73764 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.24878 * 179.97438 * 27 26 25 45 45 H 1.08999 * 109.58451 * 113.84472 * 29 9 7 46 46 H 1.09006 * 109.58949 * 353.42461 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1073 -1.3948 5 1 1.5044 2.6200 0.8029 6 1 3.5965 1.4120 0.5919 7 6 2.0104 -1.2021 0.0005 8 1 2.9851 -1.2627 0.4615 9 7 1.4590 -2.3113 -0.5834 10 6 0.4574 -2.1757 -1.6507 11 6 0.9178 -2.9896 -2.8641 12 6 1.1866 -4.4334 -2.4335 13 6 2.3022 -4.4559 -1.3861 14 6 2.5933 -5.9023 -0.9810 15 8 3.7166 -5.9328 -0.0983 16 7 3.5130 -3.8524 -1.9483 17 6 4.1194 -4.4214 -3.0089 18 8 3.6151 -5.3850 -3.5530 19 6 5.3938 -3.8758 -3.5094 20 7 6.0514 -2.8418 -3.0301 21 7 7.1333 -2.6160 -3.6834 22 1 7.7555 -1.8998 -3.4813 23 6 7.2933 -3.5147 -4.7056 24 6 8.2546 -3.7157 -5.6909 25 6 8.1071 -4.7392 -6.5847 26 6 7.0078 -5.5860 -6.5242 27 6 6.0479 -5.4104 -5.5666 28 6 6.1790 -4.3743 -4.6463 29 6 1.8578 -3.6590 -0.1555 30 1 -0.4849 0.8401 0.0004 31 1 0.3597 -1.1266 -1.9301 32 1 -0.5031 -2.5537 -1.3004 33 1 1.8317 -2.5545 -3.2684 34 1 0.1399 -2.9765 -3.6274 35 1 0.2789 -4.8599 -2.0065 36 1 1.4907 -5.0202 -3.3002 37 1 1.7226 -6.3203 -0.4757 38 1 2.8143 -6.4914 -1.8710 39 1 3.9588 -6.8203 0.1996 40 1 3.8782 -3.0434 -1.5572 41 1 9.1145 -3.0649 -5.7497 42 1 8.8559 -4.8921 -7.3479 43 1 6.9101 -6.3891 -7.2396 44 1 5.1947 -6.0712 -5.5239 45 1 1.0115 -4.1578 0.3168 46 1 2.6841 -3.5883 0.5520 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700006748.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:33 Heat of formation + Delta-G solvation = 7.282594 kcal Electronic energy + Delta-G solvation = -31236.872707 eV Core-core repulsion = 27127.538770 eV Total energy + Delta-G solvation = -4109.333937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.47680 -41.32336 -38.86200 -38.67879 -37.38742 -35.48604 -34.10623 -33.39777 -32.37634 -31.60513 -31.18493 -30.45837 -27.30781 -26.61079 -25.45552 -24.17959 -23.93438 -23.29949 -22.47661 -21.25578 -20.14073 -19.21990 -18.66585 -18.50500 -18.15215 -17.58887 -16.90708 -16.85080 -16.46929 -16.16916 -16.01408 -15.77649 -15.56932 -15.06469 -15.01513 -14.83625 -14.67021 -14.50851 -14.24565 -14.01194 -13.47735 -13.21517 -13.15017 -12.98850 -12.88259 -12.83350 -12.47040 -12.20869 -12.17242 -11.99645 -11.95998 -11.79738 -11.53408 -11.29077 -11.21883 -11.04698 -10.62538 -10.43067 -9.89118 -9.77292 -9.07196 -8.77551 -7.92497 -5.25447 -0.17866 0.39292 0.90265 1.44023 1.47804 1.55793 1.73425 2.21430 2.30937 2.50750 2.83906 3.19504 3.29425 3.31005 3.50482 3.63295 3.74590 3.98966 4.05827 4.14047 4.26073 4.28922 4.35033 4.46279 4.49943 4.53496 4.62071 4.73800 4.77413 4.86088 4.88503 4.97507 5.05084 5.07273 5.16302 5.24198 5.25696 5.46325 5.48827 5.58027 5.59753 5.67683 5.71139 5.87856 6.11921 6.33105 6.56968 6.82153 6.94560 7.10754 7.24478 7.82674 8.35638 9.14372 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.003871 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.223113 B = 7231.062485 C = 8581.326485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.038 4.038 3 Si 0.949 3.051 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.600 5.600 10 C 0.179 3.821 11 C -0.123 4.123 12 C -0.113 4.113 13 C 0.167 3.833 14 C 0.075 3.925 15 O -0.580 6.580 16 N -0.675 5.675 17 C 0.606 3.394 18 O -0.558 6.558 19 C -0.024 4.024 20 N -0.217 5.217 21 N -0.401 5.401 22 H 0.461 0.539 23 C 0.052 3.948 24 C -0.115 4.115 25 C -0.080 4.080 26 C -0.132 4.132 27 C -0.071 4.071 28 C -0.136 4.136 29 C 0.153 3.847 30 H 0.250 0.750 31 H 0.044 0.956 32 H 0.006 0.994 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.392 0.608 40 H 0.405 0.595 41 H 0.162 0.838 42 H 0.170 0.830 43 H 0.156 0.844 44 H 0.124 0.876 45 H 0.035 0.965 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.490 -12.247 -12.433 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.235 4.235 3 Si 0.778 3.222 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.322 5.322 10 C 0.053 3.947 11 C -0.162 4.162 12 C -0.151 4.151 13 C 0.080 3.920 14 C -0.004 4.004 15 O -0.387 6.387 16 N -0.324 5.324 17 C 0.391 3.609 18 O -0.436 6.436 19 C -0.194 4.194 20 N -0.048 5.048 21 N -0.123 5.123 22 H 0.309 0.691 23 C -0.061 4.061 24 C -0.136 4.136 25 C -0.101 4.101 26 C -0.151 4.151 27 C -0.091 4.091 28 C -0.143 4.143 29 C 0.027 3.973 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.241 0.759 40 H 0.240 0.760 41 H 0.180 0.820 42 H 0.188 0.812 43 H 0.174 0.826 44 H 0.142 0.858 45 H 0.053 0.947 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.922 -11.350 -11.988 22.935 hybrid contribution 0.283 0.907 0.279 0.990 sum 16.205 -10.443 -11.709 22.556 Atomic orbital electron populations 1.70315 1.06720 1.25986 1.53443 1.25489 0.95466 1.01117 1.01408 0.85530 0.78917 0.80664 0.77127 1.21831 1.22346 1.19222 1.19360 0.98309 0.88249 1.33431 0.91654 1.44289 1.47995 1.00735 1.39220 1.20574 0.89675 0.97789 0.86654 1.21892 1.00261 0.95797 0.98268 1.21711 0.97401 0.97091 0.98909 1.20975 0.84394 0.92153 0.94497 1.22473 0.89195 0.95321 0.93395 1.86475 1.50219 1.35150 1.66872 1.45657 1.26990 1.28986 1.30752 1.16775 0.81875 0.82516 0.79743 1.90638 1.65474 1.28421 1.59108 1.22861 0.98886 0.97843 0.99856 1.72931 0.96995 1.15663 1.19216 1.43115 1.18100 1.27852 1.23245 0.69072 1.19571 0.98700 0.93267 0.94542 1.20264 0.98386 1.01253 0.93706 1.21228 0.97907 0.92823 0.98101 1.21224 0.94009 1.01211 0.98650 1.20477 0.99876 0.95405 0.93330 1.19706 0.95719 1.00480 0.98420 1.21099 0.97626 0.85538 0.93024 0.94107 0.93762 0.97585 0.94130 0.91305 0.90510 0.90504 0.91322 0.92039 0.75928 0.76023 0.82017 0.81208 0.82645 0.85763 0.94688 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 11.85 21.65 0.26 -54.23 16 2 C -0.04 -2.11 4.57 84.86 0.39 -1.72 16 3 Si 0.95 45.18 29.64 68.60 2.03 47.22 16 4 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 5 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.26 -14.45 9.52 84.03 0.80 -13.65 16 8 H 0.07 3.55 7.97 -2.91 -0.02 3.53 16 9 N -0.60 -29.79 2.86 -698.92 -2.00 -31.79 16 10 C 0.18 8.66 5.44 86.35 0.47 9.13 16 11 C -0.12 -4.95 5.93 30.67 0.18 -4.76 16 12 C -0.11 -4.03 4.52 30.62 0.14 -3.89 16 13 C 0.17 6.08 0.45 3.68 0.00 6.09 16 14 C 0.08 2.29 5.59 71.98 0.40 2.69 16 15 O -0.58 -17.22 13.08 -148.98 -1.95 -19.17 16 16 N -0.68 -25.56 3.94 -425.82 -1.68 -27.24 16 17 C 0.61 22.46 7.22 86.65 0.63 23.08 16 18 O -0.56 -21.29 12.71 -4.07 -0.05 -21.34 16 19 C -0.02 -0.84 7.32 43.86 0.32 -0.52 16 20 N -0.22 -6.87 11.81 -44.88 -0.53 -7.40 16 21 N -0.40 -9.34 6.85 -51.61 -0.35 -9.69 16 22 H 0.46 6.94 8.96 -220.03 -1.97 4.96 16 23 C 0.05 1.20 7.38 39.18 0.29 1.49 16 24 C -0.12 -1.71 10.03 22.12 0.22 -1.48 16 25 C -0.08 -1.02 9.96 22.06 0.22 -0.80 16 26 C -0.13 -2.18 9.98 22.07 0.22 -1.96 16 27 C -0.07 -1.76 9.87 22.14 0.22 -1.54 16 28 C -0.14 -3.97 6.34 -20.14 -0.13 -4.10 16 29 C 0.15 6.47 5.08 86.37 0.44 6.90 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.04 2.42 6.24 -2.38 -0.01 2.40 16 32 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.04 1.74 7.53 -2.39 -0.02 1.72 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 35 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 36 H 0.08 2.74 6.26 -2.39 -0.01 2.73 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.06 1.93 6.30 -2.39 -0.02 1.92 16 39 H 0.39 7.58 9.12 -74.06 -0.68 6.90 16 40 H 0.40 16.62 8.17 -92.71 -0.76 15.86 16 41 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 43 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 44 H 0.12 3.30 7.65 -2.91 -0.02 3.28 16 45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 2.54 7.78 -2.38 -0.02 2.52 16 Total: -1.00 -73.47 372.43 -1.81 -75.28 By element: Atomic # 1 Polarization: 35.75 SS G_CDS: -2.35 Total: 33.40 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 4.81 Total: 14.96 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -4.31 Total: -130.35 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -2.00 Total: -40.51 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.47 -1.81 -75.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700006748.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.566 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds