Wall clock time and date at job start Wed Apr 1 2020 02:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99573 * 2 1 4 4 H 1.48498 * 109.47343 * 269.99865 * 3 2 1 5 5 H 1.48496 * 109.47445 * 30.00472 * 3 2 1 6 6 H 1.48499 * 109.46815 * 150.00214 * 3 2 1 7 7 C 1.38806 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00513 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99835 * 179.97438 * 7 2 1 10 10 C 1.46503 * 119.99977 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47038 * 179.97438 * 10 9 7 12 12 O 1.42904 * 109.46502 * 299.97228 * 11 10 9 13 13 C 1.53038 * 109.45909 * 180.02562 * 11 10 9 14 14 C 1.53195 * 109.31506 * 178.61561 * 13 11 10 15 15 N 1.46929 * 108.77317 * 54.63234 * 14 13 11 16 16 C 1.34774 * 120.62883 * 126.37393 * 15 14 13 17 17 O 1.21607 * 120.00410 * 3.85953 * 16 15 14 18 18 C 1.47518 * 120.00029 * 183.86635 * 16 15 14 19 19 C 1.41041 * 119.39404 * 308.80084 * 18 16 15 20 20 C 1.35186 * 121.65448 * 180.26099 * 19 18 16 21 21 C 1.41381 * 119.93121 * 359.46161 * 20 19 18 22 22 N 1.31924 * 134.39523 * 180.23238 * 21 20 19 23 23 N 1.39922 * 109.06392 * 180.02562 * 22 21 20 24 24 H 0.97002 * 124.98480 * 180.02562 * 23 22 21 25 25 C 1.33810 * 110.02543 * 0.02562 * 23 22 21 26 26 C 1.38544 * 107.83959 * 359.97438 * 25 23 22 27 27 C 1.38228 * 119.39304 * 128.54018 * 18 16 15 28 28 C 1.46928 * 118.74172 * 306.64368 * 15 14 13 29 29 C 1.52768 * 109.00205 * 53.31041 * 28 15 14 30 30 H 0.97003 * 120.00342 * 359.97438 * 1 2 3 31 31 H 0.96998 * 119.99904 * 359.97438 * 9 7 2 32 32 H 1.09002 * 109.47205 * 60.00151 * 10 9 7 33 33 H 1.08999 * 109.47439 * 300.00030 * 10 9 7 34 34 H 0.96703 * 113.99375 * 60.02384 * 12 11 10 35 35 H 1.09001 * 109.50101 * 58.66858 * 13 11 10 36 36 H 1.08992 * 109.49868 * 298.56482 * 13 11 10 37 37 H 1.09000 * 109.58534 * 294.84760 * 14 13 11 38 38 H 1.09000 * 109.59152 * 174.42259 * 14 13 11 39 39 H 1.07994 * 119.17209 * 0.02696 * 19 18 16 40 40 H 1.07998 * 120.03218 * 179.74493 * 20 19 18 41 41 H 1.07997 * 126.08135 * 179.97438 * 25 23 22 42 42 H 1.07997 * 120.32712 * 0.04560 * 27 18 16 43 43 H 1.08995 * 109.58475 * 173.14148 * 28 15 14 44 44 H 1.08996 * 109.58951 * 293.57624 * 28 15 14 45 45 H 1.09003 * 109.55812 * 185.55466 * 29 28 15 46 46 H 1.08994 * 109.35829 * 65.50029 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0022 11 6 5.6163 -2.1912 -0.0032 12 8 5.9606 -1.4419 -1.1704 13 6 6.3813 -3.5167 -0.0051 14 6 7.8863 -3.2331 -0.0410 15 7 8.2264 -2.3416 1.0763 16 6 9.1977 -2.6745 1.9493 17 8 9.8496 -3.6865 1.7768 18 6 9.4700 -1.8114 3.1142 19 6 9.6739 -0.4295 2.9192 20 6 9.9317 0.4024 3.9532 21 6 9.9910 -0.1071 5.2707 22 7 10.2106 0.4259 6.4573 23 7 10.1493 -0.5797 7.4284 24 1 10.2766 -0.4422 8.3801 25 6 9.8893 -1.7587 6.8514 26 6 9.7744 -1.5473 5.4870 27 6 9.5154 -2.3710 4.3773 28 6 7.4833 -1.0831 1.2274 29 6 5.9865 -1.3884 1.2460 30 1 -0.4851 0.8400 0.0004 31 1 3.8645 -0.3620 -0.0014 32 1 3.8485 -3.0418 -0.8925 33 1 3.8492 -3.0430 0.8875 34 1 5.5117 -0.5878 -1.2359 35 1 6.0997 -4.0981 -0.8830 36 1 6.1384 -4.0781 0.8970 37 1 8.1450 -2.7518 -0.9842 38 1 8.4370 -4.1686 0.0573 39 1 9.6265 -0.0264 1.9185 40 1 10.0877 1.4558 3.7734 41 1 9.7872 -2.7064 7.3589 42 1 9.3537 -3.4305 4.5105 43 1 7.7680 -0.6007 2.1624 44 1 7.7083 -0.4230 0.3898 45 1 5.4239 -0.4549 1.2584 46 1 5.7474 -1.9699 2.1363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700305138.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:03 Heat of formation + Delta-G solvation = 35.863090 kcal Electronic energy + Delta-G solvation = -30210.435730 eV Core-core repulsion = 26102.341136 eV Total energy + Delta-G solvation = -4108.094594 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70524 -40.48898 -38.72797 -37.04232 -35.62726 -34.16368 -32.62064 -32.16612 -31.57497 -30.82458 -30.66706 -29.35489 -27.08143 -25.14120 -23.93853 -23.37489 -22.68767 -21.50651 -21.08587 -20.43553 -19.28939 -18.68197 -18.04710 -17.68082 -16.83298 -16.27988 -15.94993 -15.43385 -15.22413 -14.91614 -14.70696 -14.62767 -14.45711 -14.27077 -14.14137 -13.63930 -13.42269 -13.27944 -13.16049 -12.92186 -12.59357 -12.48140 -12.11175 -12.00023 -11.88286 -11.57518 -11.41332 -11.17740 -11.12534 -10.93914 -10.78616 -10.71367 -10.32837 -10.23113 -9.92017 -9.65880 -9.55693 -9.12201 -8.98759 -8.63104 -8.00434 -7.33412 -5.83416 -3.20553 0.16475 1.22489 1.98832 2.24575 2.62949 2.93774 3.26966 3.31187 3.39190 3.50289 3.85122 4.17893 4.36963 4.42641 4.51018 4.64528 4.73808 4.80610 4.83297 4.95352 5.04432 5.07550 5.14916 5.20916 5.33376 5.45425 5.46218 5.51254 5.63900 5.72064 5.76024 5.88212 5.90351 5.94429 6.03522 6.04379 6.13042 6.20110 6.26383 6.38133 6.51041 6.53929 6.59150 6.60582 7.14436 7.35133 7.83947 7.95124 8.09029 8.34184 9.11288 9.83247 10.01008 11.34874 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.003051 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.720285 B = 9174.649271 C =10644.365188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.134 3.866 11 C 0.125 3.875 12 O -0.557 6.557 13 C -0.116 4.116 14 C 0.118 3.882 15 N -0.599 5.599 16 C 0.565 3.435 17 O -0.544 6.544 18 C -0.163 4.163 19 C -0.054 4.054 20 C -0.106 4.106 21 C 0.117 3.883 22 N -0.307 5.307 23 N -0.423 5.423 24 H 0.445 0.555 25 C 0.100 3.900 26 C -0.216 4.216 27 C 0.021 3.979 28 C 0.103 3.897 29 C -0.160 4.160 30 H 0.260 0.740 31 H 0.356 0.644 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.377 0.623 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.193 0.807 42 H 0.133 0.867 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.965 -3.235 12.108 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.399 5.399 10 C 0.006 3.994 11 C 0.084 3.916 12 O -0.364 6.364 13 C -0.154 4.154 14 C -0.004 4.004 15 N -0.332 5.332 16 C 0.354 3.646 17 O -0.423 6.423 18 C -0.168 4.168 19 C -0.076 4.076 20 C -0.127 4.127 21 C -0.037 4.037 22 N -0.135 5.135 23 N -0.122 5.122 24 H 0.290 0.710 25 C -0.058 4.058 26 C -0.226 4.226 27 C -0.001 4.001 28 C -0.019 4.019 29 C -0.198 4.198 30 H 0.070 0.930 31 H 0.190 0.810 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.225 0.775 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.210 0.790 42 H 0.151 0.849 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.696 -3.241 12.545 27.007 hybrid contribution -0.238 1.136 0.342 1.210 sum 23.458 -2.105 12.887 26.847 Atomic orbital electron populations 1.69698 1.05121 1.25896 1.57277 1.24689 0.95255 0.97207 1.01929 0.86577 0.79115 0.85070 0.77831 1.20862 1.21622 1.20473 1.19024 0.80402 0.94800 1.43285 0.89169 1.42642 1.04185 1.01781 1.91341 1.21295 0.88742 0.89801 0.99549 1.21388 0.94396 0.91340 0.84435 1.86421 1.70728 1.35382 1.43837 1.21846 0.94327 0.95783 1.03490 1.21554 0.95180 0.94780 0.88869 1.48041 1.35399 1.21770 1.27959 1.18252 0.79622 0.84813 0.81942 1.90778 1.49031 1.27109 1.75372 1.19392 1.09905 0.94033 0.93424 1.20698 0.96003 0.91598 0.99345 1.19747 1.04932 1.00234 0.87833 1.21040 0.97315 0.92110 0.93273 1.77673 1.30033 1.09519 0.96295 1.46333 1.49919 1.05215 1.10759 0.71014 1.22856 0.98186 0.91649 0.93148 1.19498 1.15617 0.94667 0.92812 1.20462 0.91796 0.98579 0.89217 1.21923 0.91686 0.85468 1.02836 1.22500 0.95266 1.02471 0.99571 0.92963 0.81011 0.94451 0.94818 0.77487 0.89691 0.90266 0.90486 0.89184 0.84832 0.84755 0.79015 0.84915 0.89005 0.90620 0.89750 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.06 27.73 -169.99 -4.71 16.34 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 7 C -0.25 -6.72 10.47 -15.06 -0.16 -6.88 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -16.66 4.87 -59.91 -0.29 -16.95 16 10 C 0.13 2.45 5.40 -4.04 -0.02 2.43 16 11 C 0.13 1.81 0.71 -90.58 -0.06 1.75 16 12 O -0.56 -8.23 11.71 -35.23 -0.41 -8.64 16 13 C -0.12 -1.46 5.11 -26.61 -0.14 -1.60 16 14 C 0.12 1.46 6.19 -3.71 -0.02 1.44 16 15 N -0.60 -7.38 2.98 -174.26 -0.52 -7.90 16 16 C 0.56 7.51 7.17 -12.48 -0.09 7.42 16 17 O -0.54 -8.83 16.46 5.27 0.09 -8.74 16 18 C -0.16 -1.86 4.97 -105.06 -0.52 -2.38 16 19 C -0.05 -0.54 7.18 -39.61 -0.28 -0.82 16 20 C -0.11 -1.07 10.05 -39.47 -0.40 -1.46 16 21 C 0.12 1.29 7.49 -82.98 -0.62 0.67 16 22 N -0.31 -3.27 12.69 33.30 0.42 -2.85 16 23 N -0.42 -2.72 7.17 30.87 0.22 -2.49 16 24 H 0.45 1.11 8.96 -182.73 -1.64 -0.53 16 25 C 0.10 0.60 12.09 -16.58 -0.20 0.40 16 26 C -0.22 -2.07 6.32 -105.24 -0.66 -2.74 16 27 C 0.02 0.21 9.76 -38.69 -0.38 -0.16 16 28 C 0.10 1.18 5.06 -3.93 -0.02 1.16 16 29 C -0.16 -2.15 4.91 -26.83 -0.13 -2.28 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.36 7.44 3.44 -40.82 -0.14 7.30 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.38 5.34 7.85 45.56 0.36 5.70 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.96 7.81 -51.93 -0.41 0.56 16 38 H 0.09 1.13 7.03 -51.93 -0.36 0.77 16 39 H 0.13 1.13 7.06 -52.49 -0.37 0.76 16 40 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.19 0.29 8.06 -52.49 -0.42 -0.13 16 42 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.09 0.96 4.58 -51.93 -0.24 0.72 16 44 H 0.08 0.82 7.81 -51.93 -0.41 0.41 16 45 H 0.08 1.24 6.83 -51.93 -0.35 0.89 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -36.31 369.31 -9.21 -45.51 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.53 Total: 11.16 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -3.81 Total: -3.02 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.61 Total: -58.19 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.33 Total: -17.38 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.31 -9.21 -45.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700305138.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.375 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds