Wall clock time and date at job start Wed Apr 1 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00214 * 2 1 4 4 H 1.48503 * 109.46561 * 274.98319 * 3 2 1 5 5 H 1.48502 * 109.47040 * 34.98247 * 3 2 1 6 6 H 1.48498 * 109.47288 * 154.98374 * 3 2 1 7 7 C 1.38815 * 119.99951 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00361 * 210.10265 * 7 2 1 9 9 N 1.36934 * 120.00064 * 30.11152 * 7 2 1 10 10 C 1.46923 * 120.63269 * 205.91375 * 9 7 2 11 11 C 1.53200 * 108.77612 * 233.62762 * 10 9 7 12 12 C 1.53044 * 109.31018 * 305.36448 * 11 10 9 13 13 C 1.52995 * 109.45699 * 181.38530 * 12 11 10 14 14 O 1.42901 * 109.47354 * 174.50759 * 13 12 11 15 15 N 1.46500 * 109.46094 * 301.35764 * 12 11 10 16 16 C 1.34781 * 119.99518 * 298.14699 * 15 12 11 17 17 O 1.21792 * 120.00499 * 4.32906 * 16 15 12 18 18 C 1.41703 * 119.99531 * 184.32395 * 16 15 12 19 19 C 1.39185 * 125.87380 * 180.02562 * 18 16 15 20 20 C 1.38087 * 107.67935 * 179.97438 * 19 18 16 21 21 C 1.39505 * 107.56719 * 359.97438 * 20 19 18 22 22 C 1.40616 * 132.42045 * 179.97438 * 21 20 19 23 23 C 1.36294 * 119.16457 * 180.02562 * 22 21 20 24 24 C 1.39969 * 120.03884 * 0.02562 * 23 22 21 25 25 N 1.30642 * 120.98876 * 0.02562 * 24 23 22 26 26 N 1.37161 * 108.20526 * 359.76135 * 21 20 19 27 27 C 1.53040 * 109.52664 * 61.37134 * 12 11 10 28 28 C 1.46932 * 120.63146 * 25.93187 * 9 7 2 29 29 H 0.96993 * 119.99837 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.59073 * 113.84518 * 10 9 7 31 31 H 1.09000 * 109.58715 * 353.41412 * 10 9 7 32 32 H 1.08996 * 109.50021 * 185.41426 * 11 10 9 33 33 H 1.08999 * 109.49571 * 65.31317 * 11 10 9 34 34 H 1.08994 * 109.47493 * 54.50213 * 13 12 11 35 35 H 1.09011 * 109.47322 * 294.50113 * 13 12 11 36 36 H 0.96694 * 114.00154 * 179.97438 * 14 13 12 37 37 H 0.96998 * 120.00273 * 118.14723 * 15 12 11 38 38 H 1.08001 * 126.15811 * 359.97438 * 19 18 16 39 39 H 1.07997 * 126.21565 * 180.02562 * 20 19 18 40 40 H 1.08007 * 120.41634 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.97808 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.50123 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.49846 * 58.58042 * 27 12 11 44 44 H 1.09008 * 109.49695 * 178.67525 * 27 12 11 45 45 H 1.08996 * 109.58796 * 246.16398 * 28 9 7 46 46 H 1.09002 * 109.58314 * 6.58528 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3924 2.1071 -1.3949 5 1 1.5043 2.6200 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 0.0005 8 1 2.9810 -1.2651 0.4697 9 7 1.4642 -2.3083 -0.5939 10 6 1.8439 -3.6582 -0.1554 11 6 2.3096 -4.4600 -1.3749 12 6 1.2175 -4.4313 -2.4467 13 6 1.6649 -5.2599 -3.6525 14 8 0.5968 -5.3395 -4.5985 15 7 -0.0189 -4.9948 -1.8989 16 6 -0.0486 -6.2762 -1.4821 17 8 0.9711 -6.9421 -1.4872 18 6 -1.2664 -6.8486 -1.0380 19 6 -1.4365 -8.1530 -0.5833 20 6 -2.7668 -8.3100 -0.2477 21 6 -3.4100 -7.0977 -0.4978 22 6 -4.7449 -6.6829 -0.3448 23 6 -5.0865 -5.4069 -0.6804 24 6 -4.1145 -4.5273 -1.1710 25 7 -2.8735 -4.9090 -1.3156 26 7 -2.4802 -6.2098 -0.9757 27 6 0.9689 -2.9862 -2.8849 28 6 0.4876 -2.1679 -1.6827 29 1 -0.4849 0.8400 -0.0004 30 1 0.9839 -4.1504 0.2987 31 1 2.6549 -3.5922 0.5699 32 1 2.5029 -5.4914 -1.0800 33 1 3.2226 -4.0180 -1.7738 34 1 1.9347 -6.2634 -3.3238 35 1 2.5286 -4.7858 -4.1189 36 1 0.8104 -5.8511 -5.3907 37 1 -0.8160 -4.4457 -1.8361 38 1 -0.6667 -8.9066 -0.5067 39 1 -3.2256 -9.2080 0.1390 40 1 -5.4902 -7.3671 0.0332 41 1 -6.1080 -5.0746 -0.5685 42 1 -4.3949 -3.5182 -1.4347 43 1 1.8946 -2.5583 -3.2696 44 1 0.2077 -2.9685 -3.6650 45 1 -0.4830 -2.5384 -1.3531 46 1 0.4037 -1.1184 -1.9651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700339495.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:04 Heat of formation + Delta-G solvation = 57.727974 kcal Electronic energy + Delta-G solvation = -31714.146939 eV Core-core repulsion = 27607.000478 eV Total energy + Delta-G solvation = -4107.146461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.03417 -39.93300 -37.81903 -36.84627 -36.04834 -34.03024 -33.47305 -31.85984 -30.50433 -30.45142 -29.93149 -28.58470 -26.65552 -24.86578 -23.81714 -23.40817 -22.31752 -21.71355 -20.70439 -20.31683 -18.67231 -18.31244 -17.28350 -17.04861 -16.67294 -16.04586 -15.86469 -15.73992 -14.99960 -14.72073 -14.64014 -14.29716 -13.93688 -13.74228 -13.64856 -13.40872 -13.12744 -13.04694 -12.92963 -12.51943 -12.41112 -12.32366 -12.00426 -11.72046 -11.38897 -11.29939 -10.98441 -10.91034 -10.71032 -10.63429 -10.38054 -10.26720 -10.00158 -9.84267 -9.72694 -9.53957 -9.08028 -8.96877 -8.49088 -8.36289 -7.80359 -6.71210 -5.81717 -3.11759 0.33428 0.94106 1.86192 2.29743 3.13076 3.39817 3.48347 3.50126 3.69551 3.73505 4.09712 4.35220 4.47541 4.51585 4.55592 4.75872 5.07045 5.16645 5.28747 5.29682 5.40241 5.49569 5.53450 5.59703 5.62747 5.69561 5.79811 5.85311 5.97937 6.03724 6.09442 6.15442 6.34226 6.37148 6.52063 6.60588 6.63150 6.69297 6.73602 6.86530 7.00462 7.13742 7.24553 7.48422 7.51661 7.85882 7.86144 8.11346 8.42537 8.66885 9.19880 9.87233 10.45813 11.26631 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011474 B = 0.004148 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.811395 B = 6749.390356 C = 8040.965795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.008 3.992 3 Si 0.888 3.112 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.258 4.258 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.153 3.847 11 C -0.144 4.144 12 C 0.192 3.808 13 C 0.064 3.936 14 O -0.566 6.566 15 N -0.690 5.690 16 C 0.589 3.411 17 O -0.549 6.549 18 C -0.016 4.016 19 C -0.086 4.086 20 C -0.175 4.175 21 C -0.001 4.001 22 C -0.014 4.014 23 C -0.199 4.199 24 C 0.140 3.860 25 N -0.268 5.268 26 N -0.232 5.232 27 C -0.141 4.141 28 C 0.174 3.826 29 H 0.252 0.748 30 H 0.014 0.986 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.369 0.631 37 H 0.410 0.590 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.199 0.801 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.018 0.982 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.435 -14.795 -5.168 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.027 3.973 11 C -0.184 4.184 12 C 0.106 3.894 13 C -0.015 4.015 14 O -0.370 6.370 15 N -0.343 5.343 16 C 0.377 3.623 17 O -0.429 6.429 18 C -0.133 4.133 19 C -0.110 4.110 20 C -0.201 4.201 21 C -0.113 4.113 22 C -0.040 4.040 23 C -0.222 4.222 24 C -0.052 4.052 25 N -0.077 5.077 26 N 0.004 4.996 27 C -0.181 4.181 28 C 0.048 3.952 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.214 0.786 37 H 0.250 0.750 38 H 0.182 0.818 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.168 0.832 42 H 0.215 0.785 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.180 -14.014 -5.119 17.518 hybrid contribution -0.571 0.623 -0.122 0.854 sum -9.751 -13.391 -5.241 17.375 Atomic orbital electron populations 1.70234 1.05475 1.25564 1.51830 1.24847 0.94825 0.98509 1.00984 0.86492 0.79832 0.84324 0.77623 1.21503 1.22032 1.20318 1.19148 0.98720 0.87460 1.33409 0.91560 1.44105 1.49817 1.00337 1.36897 1.20785 0.97154 0.86232 0.93144 1.22401 0.96996 1.01619 0.97374 1.20296 0.84843 0.93168 0.91095 1.22736 0.88833 1.00507 0.89420 1.86503 1.40770 1.76887 1.32871 1.46072 1.14947 1.11590 1.61672 1.15661 0.86514 0.82278 0.77865 1.90750 1.33027 1.62106 1.57024 1.19716 0.83907 0.93539 1.16128 1.21291 0.96839 0.93659 0.99253 1.21007 0.93800 0.96344 1.08963 1.19423 0.90971 0.92486 1.08424 1.20904 0.93131 0.96281 0.93730 1.21442 1.01654 0.94282 1.04794 1.24085 0.87973 1.01198 0.91911 1.75619 1.19204 0.94034 1.18822 1.45847 1.08246 1.06121 1.39362 1.22412 1.02113 0.93176 1.00375 1.20649 0.90612 0.98767 0.85206 0.93820 0.96770 0.92737 0.90410 0.91555 0.91800 0.93493 0.78570 0.75034 0.81843 0.82787 0.82876 0.83206 0.78501 0.91107 0.91964 0.96374 0.90466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.82 11.96 55.49 0.66 -25.16 16 2 C 0.01 0.23 4.54 -17.43 -0.08 0.15 16 3 Si 0.89 21.73 29.65 -169.99 -5.04 16.69 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.26 -7.23 9.50 -15.06 -0.14 -7.37 16 8 H 0.07 1.85 7.98 -52.49 -0.42 1.43 16 9 N -0.59 -15.12 2.99 -172.31 -0.52 -15.63 16 10 C 0.15 3.53 6.26 -3.71 -0.02 3.50 16 11 C -0.14 -2.86 4.70 -26.60 -0.12 -2.99 16 12 C 0.19 3.66 0.44 -131.78 -0.06 3.60 16 13 C 0.06 1.05 5.60 37.16 0.21 1.26 16 14 O -0.57 -8.89 12.94 -35.23 -0.46 -9.34 16 15 N -0.69 -13.35 3.86 -50.39 -0.19 -13.55 16 16 C 0.59 11.26 7.01 -14.93 -0.10 11.15 16 17 O -0.55 -11.03 13.08 5.11 0.07 -10.96 16 18 C -0.02 -0.27 6.84 -83.74 -0.57 -0.84 16 19 C -0.09 -1.19 10.49 -39.29 -0.41 -1.61 16 20 C -0.18 -2.02 10.92 -39.17 -0.43 -2.45 16 21 C 0.00 -0.02 6.80 -84.11 -0.57 -0.59 16 22 C -0.01 -0.12 10.11 -39.38 -0.40 -0.52 16 23 C -0.20 -1.66 10.04 -39.63 -0.40 -2.05 16 24 C 0.14 1.53 11.29 -17.41 -0.20 1.34 16 25 N -0.27 -4.12 9.69 30.61 0.30 -3.83 16 26 N -0.23 -3.67 4.01 -8.28 -0.03 -3.70 16 27 C -0.14 -2.85 4.88 -26.61 -0.13 -2.98 16 28 C 0.17 4.18 5.17 -3.71 -0.02 4.16 16 29 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.01 0.35 7.74 -51.93 -0.40 -0.05 16 31 H 0.05 1.24 7.93 -51.93 -0.41 0.83 16 32 H 0.08 1.55 6.19 -51.93 -0.32 1.22 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.10 6.35 -51.93 -0.33 0.78 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.37 3.98 9.12 45.56 0.42 4.39 16 37 H 0.41 8.17 4.82 -40.82 -0.20 7.98 16 38 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 39 H 0.15 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.20 1.52 8.06 -52.49 -0.42 1.09 16 43 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.06 1.20 7.80 -51.92 -0.41 0.80 16 45 H 0.02 0.46 6.90 -51.93 -0.36 0.10 16 46 H 0.08 2.05 6.33 -51.93 -0.33 1.72 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -35.44 368.26 -8.39 -43.82 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.27 Total: 12.35 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -3.45 Total: 3.76 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.22 Total: -61.87 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.39 Total: -20.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.04 Total: 16.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.44 -8.39 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700339495.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.551 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds