Wall clock time and date at job start Wed Apr 1 2020 02:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99992 * 2 1 4 4 H 1.48498 * 109.47402 * 239.99983 * 3 2 1 5 5 H 1.48503 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48512 * 109.46984 * 119.99963 * 3 2 1 7 7 C 1.38815 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00281 * 196.91343 * 7 2 1 9 9 N 1.36940 * 119.99632 * 16.91059 * 7 2 1 10 10 C 1.47156 * 120.97908 * 206.22042 * 9 7 2 11 11 C 1.53297 * 108.38393 * 230.55703 * 10 9 7 12 12 O 1.42972 * 109.21975 * 307.69834 * 11 10 9 13 13 C 1.42958 * 114.16451 * 62.58321 * 12 11 10 14 14 H 1.08995 * 109.51728 * 57.39531 * 13 12 11 15 15 C 1.53005 * 109.50772 * 177.49275 * 13 12 11 16 16 N 1.46493 * 109.47145 * 299.99896 * 15 13 12 17 17 C 1.34776 * 119.99941 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99888 * 359.97438 * 17 16 15 19 19 C 1.50694 * 120.00087 * 179.97438 * 17 16 15 20 20 N 1.46502 * 109.47498 * 179.97438 * 19 17 16 21 21 N 1.39871 * 125.45789 * 90.02322 * 20 19 17 22 22 C 1.30243 * 110.08386 * 179.97438 * 21 20 19 23 23 C 1.45926 * 107.78625 * 359.97438 * 22 21 20 24 24 C 1.39944 * 134.03278 * 179.97438 * 23 22 21 25 25 C 1.36472 * 119.63391 * 179.30073 * 24 23 22 26 26 C 1.38964 * 120.62876 * 0.60835 * 25 24 23 27 27 C 1.36592 * 120.81510 * 359.61434 * 26 25 24 28 28 C 1.37035 * 125.46451 * 269.72579 * 20 19 17 29 29 C 1.47150 * 120.98324 * 26.24099 * 9 7 2 30 30 H 0.96997 * 119.99931 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.68234 * 350.28150 * 10 9 7 32 32 H 1.09002 * 109.67852 * 110.79939 * 10 9 7 33 33 H 1.09000 * 109.51376 * 187.77813 * 11 10 9 34 34 H 1.08993 * 109.51041 * 67.62145 * 11 10 9 35 35 H 1.08998 * 109.47421 * 60.00253 * 15 13 12 36 36 H 1.09003 * 109.46922 * 179.97438 * 15 13 12 37 37 H 0.96995 * 120.00138 * 359.97438 * 16 15 13 38 38 H 1.09004 * 109.47744 * 300.00301 * 19 17 16 39 39 H 1.09003 * 109.47164 * 59.99874 * 19 17 16 40 40 H 1.08010 * 126.10484 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.18048 * 359.97438 * 24 23 22 42 42 H 1.08001 * 119.68459 * 180.24283 * 25 24 23 43 43 H 1.07995 * 119.59508 * 179.63365 * 26 25 24 44 44 H 1.07993 * 120.07804 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.68132 * 9.71914 * 29 9 7 46 46 H 1.08998 * 109.68373 * 249.16632 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2225 0.2715 9 7 1.3700 -2.3623 -0.3460 10 6 1.8345 -3.6635 0.1605 11 6 1.9823 -4.6202 -1.0282 12 8 0.7661 -4.6287 -1.7796 13 6 0.4252 -3.3655 -2.3557 14 1 1.2382 -3.0270 -2.9981 15 6 -0.8536 -3.5097 -3.1832 16 7 -0.6370 -4.4900 -4.2501 17 6 -1.6330 -4.7811 -5.1102 18 8 -2.7087 -4.2318 -5.0006 19 6 -1.4100 -5.7890 -6.2080 20 7 -2.6346 -5.9272 -7.0003 21 7 -2.9585 -5.1715 -8.1318 22 6 -4.1153 -5.5426 -8.6013 23 6 -4.6196 -6.6141 -7.7486 24 6 -5.7828 -7.3921 -7.7495 25 6 -5.9540 -8.3509 -6.7936 26 6 -4.9904 -8.5530 -5.8129 27 6 -3.8490 -7.8032 -5.7885 28 6 -3.6436 -6.8214 -6.7550 29 6 0.1976 -2.3446 -1.2351 30 1 -0.4850 0.8400 0.0004 31 1 2.7976 -3.5420 0.6560 32 1 1.1065 -4.0637 0.8662 33 1 2.1914 -5.6255 -0.6626 34 1 2.8013 -4.2858 -1.6649 35 1 -1.6666 -3.8464 -2.5400 36 1 -1.1132 -2.5462 -3.6218 37 1 0.2234 -4.9290 -4.3380 38 1 -0.5969 -5.4521 -6.8510 39 1 -1.1508 -6.7526 -5.7694 40 1 -4.6122 -5.1313 -9.4676 41 1 -6.5359 -7.2419 -8.5089 42 1 -6.8497 -8.9544 -6.7958 43 1 -5.1458 -9.3124 -5.0609 44 1 -3.1078 -7.9706 -5.0211 45 1 0.0769 -1.3497 -1.6637 46 1 -0.6954 -2.6123 -0.6704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715286898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:36 Heat of formation + Delta-G solvation = 43.262508 kcal Electronic energy + Delta-G solvation = -29307.194741 eV Core-core repulsion = 25199.421010 eV Total energy + Delta-G solvation = -4107.773731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.48173 -39.62844 -38.47963 -37.32805 -34.90915 -34.37286 -33.71828 -31.49775 -31.17193 -30.55060 -29.99600 -27.94816 -27.05573 -25.22786 -23.34894 -23.24739 -22.23460 -21.93944 -21.27353 -20.37675 -19.63097 -17.67579 -17.37675 -17.10737 -16.97258 -16.12100 -15.68168 -15.45233 -15.27208 -15.10323 -14.90548 -14.41346 -14.34615 -14.14178 -14.01080 -13.66119 -13.65249 -13.30542 -13.03555 -12.97206 -12.68711 -12.17804 -12.06520 -12.00040 -11.59162 -11.27218 -11.14794 -10.95926 -10.87969 -10.79174 -10.54395 -10.46025 -10.33462 -10.09418 -9.84369 -9.71434 -9.15997 -8.98263 -8.85416 -8.59771 -8.08217 -6.81647 -5.89426 -3.33484 0.77015 1.31944 2.02426 2.35840 2.54137 3.20678 3.32258 3.38466 3.39147 3.63312 4.16584 4.20898 4.33325 4.39471 4.55414 4.64916 4.76625 4.77029 4.96110 5.06543 5.12294 5.15863 5.30594 5.43121 5.47415 5.54363 5.58658 5.77107 5.79142 5.86562 5.94662 6.04490 6.14643 6.16103 6.28510 6.28844 6.31854 6.42486 6.53973 6.60274 6.72077 6.79867 7.00282 7.41452 7.44274 7.49536 7.65479 7.76123 8.17930 8.27872 9.05450 9.68477 10.25160 11.18722 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.002128 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.493412 B =13152.068539 C =13768.732458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.051 3.949 12 O -0.391 6.391 13 C 0.056 3.944 14 H 0.057 0.943 15 C 0.134 3.866 16 N -0.716 5.716 17 C 0.489 3.511 18 O -0.525 6.525 19 C 0.123 3.877 20 N -0.389 5.389 21 N -0.241 5.241 22 C 0.073 3.927 23 C -0.181 4.181 24 C -0.040 4.040 25 C -0.163 4.163 26 C -0.070 4.070 27 C -0.138 4.138 28 C 0.139 3.861 29 C 0.152 3.848 30 H 0.257 0.743 31 H 0.062 0.938 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.403 0.597 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.197 0.803 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.096 0.904 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.749 -18.032 -15.555 24.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.004 4.004 14 H 0.075 0.925 15 C 0.010 3.990 16 N -0.368 5.368 17 C 0.272 3.728 18 O -0.400 6.400 19 C -0.003 4.003 20 N -0.176 5.176 21 N -0.052 5.052 22 C -0.125 4.125 23 C -0.189 4.189 24 C -0.061 4.061 25 C -0.183 4.183 26 C -0.091 4.091 27 C -0.160 4.160 28 C 0.025 3.975 29 C 0.026 3.974 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.237 0.763 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.214 0.786 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.114 0.886 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.588 -16.776 -15.515 23.524 hybrid contribution 0.456 0.505 0.390 0.784 sum -5.131 -16.271 -15.125 22.800 Atomic orbital electron populations 1.70002 1.05273 1.25980 1.53289 1.25070 0.95361 0.98560 1.00574 0.86322 0.78901 0.83080 0.78182 1.20936 1.21475 1.20770 1.19140 0.92636 0.84482 1.42542 0.91353 1.44037 1.33721 1.01379 1.52640 1.21603 0.98654 0.87553 0.93964 1.23010 0.86106 0.99633 0.94015 1.87764 1.42259 1.31507 1.69504 1.23151 0.94898 0.86502 0.95848 0.92539 1.21442 0.97841 0.92236 0.87445 1.45905 1.15403 1.44286 1.31179 1.20859 0.84929 0.83901 0.83093 1.90773 1.24979 1.51804 1.72437 1.21376 0.85622 1.00901 0.92383 1.47606 1.16861 1.29681 1.23477 1.76603 1.16413 1.14391 0.97800 1.25071 0.92598 0.95164 0.99698 1.19905 0.97535 1.02352 0.99070 1.20334 0.94591 0.93293 0.97840 1.20655 1.00339 1.00509 0.96777 1.20715 0.92652 0.97981 0.97759 1.19850 1.00098 0.97162 0.98896 1.18776 0.89261 0.92767 0.96677 1.21305 0.89518 0.97620 0.88984 0.93283 0.91942 0.95546 0.89978 0.93828 0.90688 0.89944 0.76264 0.85883 0.86272 0.78641 0.85505 0.85702 0.85391 0.85914 0.88570 0.95056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.14 55.49 0.62 -25.17 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.01 16 3 Si 0.91 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.93 9.65 -15.06 -0.15 -7.08 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.58 3.05 -171.83 -0.52 -15.10 16 10 C 0.11 2.20 6.73 -3.53 -0.02 2.18 16 11 C 0.05 0.84 6.99 37.31 0.26 1.10 16 12 O -0.39 -6.90 10.13 -35.23 -0.36 -7.26 16 13 C 0.06 1.02 2.87 -26.57 -0.08 0.94 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.23 5.37 -4.04 -0.02 2.21 16 16 N -0.72 -9.57 5.45 -60.30 -0.33 -9.89 16 17 C 0.49 6.99 7.90 -10.99 -0.09 6.90 16 18 O -0.52 -10.09 16.43 5.56 0.09 -10.00 16 19 C 0.12 1.29 6.85 -5.20 -0.04 1.25 16 20 N -0.39 -5.10 3.14 -59.88 -0.19 -5.29 16 21 N -0.24 -3.27 12.40 31.87 0.40 -2.88 16 22 C 0.07 0.80 12.28 -15.15 -0.19 0.62 16 23 C -0.18 -2.09 6.37 -105.21 -0.67 -2.76 16 24 C -0.04 -0.36 10.07 -39.58 -0.40 -0.76 16 25 C -0.16 -1.38 9.97 -39.95 -0.40 -1.78 16 26 C -0.07 -0.63 9.96 -39.91 -0.40 -1.03 16 27 C -0.14 -1.49 9.96 -39.78 -0.40 -1.89 16 28 C 0.14 1.77 6.87 -84.17 -0.58 1.19 16 29 C 0.15 3.54 4.73 -3.53 -0.02 3.53 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.06 1.20 7.96 -51.93 -0.41 0.78 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.40 4.31 8.35 -40.82 -0.34 3.97 16 38 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.12 0.86 8.13 -51.93 -0.42 0.44 16 40 H 0.20 1.32 8.06 -52.48 -0.42 0.90 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.10 2.47 6.14 -51.93 -0.32 2.16 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -35.51 386.34 -9.30 -44.80 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.54 Total: 4.07 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -3.26 Total: 4.62 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.03 Total: -58.33 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.27 Total: -17.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.51 -9.30 -44.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715286898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.063 kcal (2) G-P(sol) polarization free energy of solvation -35.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds