Wall clock time and date at job start Wed Apr 1 2020 02:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48503 * 109.47076 * 270.00151 * 3 2 1 5 5 H 1.48496 * 109.47120 * 29.99896 * 3 2 1 6 6 H 1.48502 * 109.47326 * 149.99966 * 3 2 1 7 7 C 1.38814 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 196.91565 * 7 2 1 9 9 N 1.36935 * 120.00266 * 16.91437 * 7 2 1 10 10 C 1.47158 * 120.97812 * 26.23748 * 9 7 2 11 11 C 1.53291 * 108.38193 * 129.44550 * 10 9 7 12 12 O 1.42968 * 109.22581 * 52.30183 * 11 10 9 13 13 C 1.42964 * 114.16430 * 297.41898 * 12 11 10 14 14 H 1.09002 * 109.51414 * 302.60488 * 13 12 11 15 15 C 1.53001 * 109.51009 * 182.50243 * 13 12 11 16 16 N 1.46494 * 109.46957 * 65.00369 * 15 13 12 17 17 C 1.34775 * 119.99802 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00071 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00403 * 179.97438 * 17 16 15 20 20 C 1.50692 * 109.47636 * 179.97438 * 19 17 16 21 21 C 1.34231 * 126.57217 * 264.97726 * 20 19 17 22 22 N 1.36908 * 109.91616 * 180.02562 * 21 20 19 23 23 H 0.97002 * 124.99264 * 180.26655 * 22 21 20 24 24 C 1.37427 * 110.02720 * 0.02562 * 22 21 20 25 25 N 1.32649 * 133.19111 * 180.02562 * 24 22 21 26 26 C 1.31583 * 121.67343 * 179.97438 * 25 24 22 27 27 C 1.38671 * 121.57886 * 0.02562 * 26 25 24 28 28 C 1.38193 * 119.41320 * 359.97438 * 27 26 25 29 29 C 1.39690 * 118.04019 * 0.02562 * 28 27 26 30 30 C 1.47146 * 120.98374 * 206.21884 * 9 7 2 31 31 H 0.97001 * 119.99784 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.68517 * 9.72318 * 10 9 7 33 33 H 1.09002 * 109.71234 * 249.18464 * 10 9 7 34 34 H 1.08997 * 109.51304 * 292.37736 * 11 10 9 35 35 H 1.09004 * 109.51293 * 172.22612 * 11 10 9 36 36 H 1.08995 * 109.47305 * 304.99497 * 15 13 12 37 37 H 1.09006 * 109.46844 * 185.00109 * 15 13 12 38 38 H 0.96992 * 120.00365 * 359.97438 * 16 15 13 39 39 H 1.09003 * 109.46670 * 60.00104 * 19 17 16 40 40 H 1.09006 * 109.47150 * 300.00234 * 19 17 16 41 41 H 1.08005 * 125.03819 * 0.04650 * 21 20 19 42 42 H 1.08001 * 119.21272 * 180.02562 * 26 25 24 43 43 H 1.08009 * 120.29236 * 180.02562 * 27 26 25 44 44 H 1.08004 * 120.98361 * 180.02562 * 28 27 26 45 45 H 1.09001 * 109.68248 * 110.83534 * 30 9 7 46 46 H 1.08998 * 109.68556 * 350.28122 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2222 0.2727 9 7 1.3700 -2.3626 -0.3440 10 6 0.1976 -2.3456 -1.2331 11 6 0.4252 -3.3674 -2.3529 12 8 0.7660 -4.6302 -1.7757 13 6 1.9822 -4.6211 -1.0242 14 1 2.8015 -4.2881 -1.6615 15 6 2.2757 -6.0318 -0.5099 16 7 2.5288 -6.9226 -1.6450 17 6 2.8120 -8.2228 -1.4312 18 8 2.8567 -8.6555 -0.2991 19 6 3.0718 -9.1394 -2.5989 20 6 3.3622 -10.5285 -2.0922 21 6 4.5737 -11.0598 -1.8646 22 7 4.4416 -12.3442 -1.4091 23 1 5.1784 -12.9292 -1.1730 24 6 3.1116 -12.6811 -1.3304 25 7 2.4748 -13.7828 -0.9557 26 6 1.1613 -13.8600 -0.9689 27 6 0.3753 -12.7927 -1.3762 28 6 0.9816 -11.6177 -1.7781 29 6 2.3771 -11.5580 -1.7561 30 6 1.8344 -3.6633 0.1636 31 1 -0.4850 0.8401 -0.0004 32 1 0.0769 -1.3511 -1.6626 33 1 -0.6959 -2.6125 -0.6686 34 1 1.2386 -3.0291 -2.9947 35 1 -0.4859 -3.4706 -2.9423 36 1 1.4188 -6.3980 0.0555 37 1 3.1536 -6.0077 0.1359 38 1 2.4927 -6.5767 -2.5504 39 1 3.9283 -8.7730 -3.1647 40 1 2.1935 -9.1638 -3.2441 41 1 5.5132 -10.5496 -2.0177 42 1 0.6840 -14.7766 -0.6551 43 1 -0.7014 -12.8787 -1.3785 44 1 0.3940 -10.7705 -2.0998 45 1 1.1061 -4.0633 0.8691 46 1 2.7975 -3.5415 0.6591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715297594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:00 Heat of formation + Delta-G solvation = 16.186102 kcal Electronic energy + Delta-G solvation = -29001.806859 eV Core-core repulsion = 24892.859007 eV Total energy + Delta-G solvation = -4108.947852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76198 -39.59201 -38.45311 -37.94878 -34.89169 -34.27986 -33.66731 -31.88235 -31.40103 -30.62277 -29.81037 -28.03438 -27.09640 -25.18795 -23.88666 -23.20639 -22.75345 -21.93312 -20.87401 -19.83636 -19.34279 -18.43506 -17.18575 -16.99476 -16.81226 -16.28053 -16.09865 -15.71675 -15.19043 -15.03770 -14.96925 -14.80592 -14.41644 -13.98205 -13.68747 -13.55164 -13.29387 -13.26677 -13.03448 -12.95563 -12.76275 -12.67097 -12.43330 -12.22233 -11.66152 -11.56216 -11.15162 -10.88770 -10.75178 -10.54172 -10.43371 -10.28202 -10.01811 -9.84717 -9.66131 -9.58459 -9.09780 -8.93460 -8.63618 -8.57779 -8.17679 -6.79234 -5.87550 -3.31439 0.81619 1.20233 2.33345 2.56966 2.73414 3.31837 3.36094 3.39646 3.40650 3.74709 4.21863 4.29074 4.40209 4.42311 4.47959 4.75714 4.87236 4.94156 5.04035 5.13212 5.19226 5.24145 5.30006 5.37545 5.47707 5.50029 5.56352 5.73048 5.78182 5.85755 6.01909 6.08437 6.13274 6.19890 6.26907 6.30476 6.33976 6.45824 6.55892 6.72958 6.74483 7.06212 7.07215 7.48407 7.61079 7.67604 7.82057 7.82608 8.29846 8.33337 9.07978 9.70605 10.27398 11.20518 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.001868 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.544691 B =14988.268912 C =15445.485410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.066 3.934 14 H 0.058 0.942 15 C 0.131 3.869 16 N -0.723 5.723 17 C 0.509 3.491 18 O -0.536 6.536 19 C -0.066 4.066 20 C -0.142 4.142 21 C 0.074 3.926 22 N -0.581 5.581 23 H 0.419 0.581 24 C 0.285 3.715 25 N -0.503 5.503 26 C 0.134 3.866 27 C -0.203 4.203 28 C -0.025 4.025 29 C -0.133 4.133 30 C 0.121 3.879 31 H 0.255 0.745 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.402 0.598 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.177 0.823 42 H 0.159 0.841 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.030 0.970 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.726 -23.223 -8.912 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.006 3.994 14 H 0.076 0.924 15 C 0.007 3.993 16 N -0.375 5.375 17 C 0.294 3.706 18 O -0.412 6.412 19 C -0.107 4.107 20 C -0.150 4.150 21 C -0.052 4.052 22 N -0.187 5.187 23 H 0.257 0.743 24 C 0.052 3.948 25 N -0.216 5.216 26 C -0.031 4.031 27 C -0.225 4.225 28 C -0.051 4.051 29 C -0.140 4.140 30 C -0.006 4.006 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.194 0.806 42 H 0.176 0.824 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.048 0.952 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.212 -24.265 -7.783 26.228 hybrid contribution 0.288 1.865 -0.452 1.941 sum 6.500 -22.399 -8.235 24.734 Atomic orbital electron populations 1.70036 1.05269 1.25692 1.53666 1.25060 0.95370 0.98517 1.00759 0.86228 0.79078 0.83378 0.77716 1.21372 1.21666 1.20368 1.19207 0.92651 0.84447 1.42178 0.91307 1.44071 1.33574 1.01013 1.53125 1.21447 0.89135 0.98329 0.89768 1.23320 0.98997 0.84912 0.96564 1.87789 1.41252 1.32559 1.69286 1.22800 0.87480 0.93919 0.95226 0.92387 1.21382 1.01509 0.87865 0.88532 1.45976 1.71698 1.09132 1.10676 1.20615 0.76846 0.82251 0.90880 1.90721 1.50828 1.75462 1.24188 1.19958 1.04313 0.89963 0.96462 1.19485 0.91315 0.94578 1.09590 1.21600 0.99308 0.83922 1.00410 1.41448 1.05115 1.13523 1.58590 0.74313 1.18352 0.85219 0.91404 0.99838 1.66447 1.11246 1.25204 1.18699 1.22409 0.87076 0.98434 0.95199 1.21850 1.01304 0.94497 1.04817 1.20967 0.92231 0.97490 0.94420 1.19664 0.93772 0.94994 1.05587 1.21448 0.98927 0.87231 0.93002 0.93471 0.88775 0.95373 0.94114 0.90050 0.90834 0.90312 0.76357 0.87990 0.88068 0.80550 0.82385 0.84566 0.84993 0.95248 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.14 55.49 0.62 -25.07 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.85 9.65 -15.06 -0.15 -6.99 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.61 3.05 -171.83 -0.52 -15.14 16 10 C 0.14 3.24 5.45 -3.53 -0.02 3.22 16 11 C 0.04 0.74 6.98 37.31 0.26 1.00 16 12 O -0.39 -7.02 10.33 -35.23 -0.36 -7.38 16 13 C 0.07 1.10 2.81 -26.58 -0.07 1.03 16 14 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 15 C 0.13 1.92 5.34 -4.04 -0.02 1.90 16 16 N -0.72 -8.74 5.50 -60.30 -0.33 -9.08 16 17 C 0.51 6.38 7.82 -10.99 -0.09 6.29 16 18 O -0.54 -9.08 16.03 5.56 0.09 -9.00 16 19 C -0.07 -0.57 6.23 -29.04 -0.18 -0.75 16 20 C -0.14 -1.48 4.81 -102.76 -0.49 -1.97 16 21 C 0.07 0.63 11.74 -16.70 -0.20 0.43 16 22 N -0.58 -5.33 6.05 -12.14 -0.07 -5.40 16 23 H 0.42 2.67 8.96 -40.82 -0.37 2.30 16 24 C 0.29 3.44 8.43 -155.69 -1.31 2.13 16 25 N -0.50 -6.07 10.39 -12.27 -0.13 -6.19 16 26 C 0.13 1.30 11.15 -17.50 -0.20 1.11 16 27 C -0.20 -1.87 10.10 -39.44 -0.40 -2.27 16 28 C -0.02 -0.26 10.22 -39.06 -0.40 -0.66 16 29 C -0.13 -1.60 6.37 -105.11 -0.67 -2.27 16 30 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.40 4.03 8.47 -40.82 -0.35 3.69 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.18 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -35.52 384.71 -10.47 -45.99 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.49 Total: 4.70 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -4.04 Total: 4.62 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.44 Total: -60.88 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.27 Total: -16.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.52 -10.47 -45.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715297594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.177 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds