Wall clock time and date at job start Wed Apr 1 2020 02:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00148 * 2 1 4 4 H 1.48503 * 109.47076 * 270.00151 * 3 2 1 5 5 H 1.48496 * 109.47120 * 29.99896 * 3 2 1 6 6 H 1.48502 * 109.47326 * 149.99966 * 3 2 1 7 7 C 1.38814 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 196.91565 * 7 2 1 9 9 N 1.36935 * 120.00266 * 16.91437 * 7 2 1 10 10 C 1.47158 * 120.97812 * 26.23748 * 9 7 2 11 11 C 1.53291 * 108.38193 * 129.44550 * 10 9 7 12 12 O 1.42968 * 109.22581 * 52.30183 * 11 10 9 13 13 C 1.42964 * 114.16430 * 297.41898 * 12 11 10 14 14 H 1.09002 * 109.51414 * 302.60488 * 13 12 11 15 15 C 1.53001 * 109.51009 * 182.50243 * 13 12 11 16 16 N 1.46494 * 109.46957 * 65.00369 * 15 13 12 17 17 C 1.34775 * 119.99802 * 179.97438 * 16 15 13 18 18 O 1.21282 * 120.00071 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00403 * 179.97438 * 17 16 15 20 20 C 1.50692 * 109.47636 * 179.97438 * 19 17 16 21 21 C 1.34231 * 126.57217 * 264.97726 * 20 19 17 22 22 N 1.36908 * 109.91616 * 180.02562 * 21 20 19 23 23 H 0.97002 * 124.99264 * 180.26655 * 22 21 20 24 24 C 1.37427 * 110.02720 * 0.02562 * 22 21 20 25 25 N 1.32649 * 133.19111 * 180.02562 * 24 22 21 26 26 C 1.31583 * 121.67343 * 179.97438 * 25 24 22 27 27 C 1.38671 * 121.57886 * 0.02562 * 26 25 24 28 28 C 1.38193 * 119.41320 * 359.97438 * 27 26 25 29 29 C 1.39690 * 118.04019 * 0.02562 * 28 27 26 30 30 C 1.47146 * 120.98374 * 206.21884 * 9 7 2 31 31 H 0.97001 * 119.99784 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.68517 * 9.72318 * 10 9 7 33 33 H 1.09002 * 109.71234 * 249.18464 * 10 9 7 34 34 H 1.08997 * 109.51304 * 292.37736 * 11 10 9 35 35 H 1.09004 * 109.51293 * 172.22612 * 11 10 9 36 36 H 1.08995 * 109.47305 * 304.99497 * 15 13 12 37 37 H 1.09006 * 109.46844 * 185.00109 * 15 13 12 38 38 H 0.96992 * 120.00365 * 359.97438 * 16 15 13 39 39 H 1.09003 * 109.46670 * 60.00104 * 19 17 16 40 40 H 1.09006 * 109.47150 * 300.00234 * 19 17 16 41 41 H 1.08005 * 125.03819 * 0.04650 * 21 20 19 42 42 H 1.08001 * 119.21272 * 180.02562 * 26 25 24 43 43 H 1.08009 * 120.29236 * 180.02562 * 27 26 25 44 44 H 1.08004 * 120.98361 * 180.02562 * 28 27 26 45 45 H 1.09001 * 109.68248 * 110.83534 * 30 9 7 46 46 H 1.08998 * 109.68556 * 350.28122 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2222 0.2727 9 7 1.3700 -2.3626 -0.3440 10 6 0.1976 -2.3456 -1.2331 11 6 0.4252 -3.3674 -2.3529 12 8 0.7660 -4.6302 -1.7757 13 6 1.9822 -4.6211 -1.0242 14 1 2.8015 -4.2881 -1.6615 15 6 2.2757 -6.0318 -0.5099 16 7 2.5288 -6.9226 -1.6450 17 6 2.8120 -8.2228 -1.4312 18 8 2.8567 -8.6555 -0.2991 19 6 3.0718 -9.1394 -2.5989 20 6 3.3622 -10.5285 -2.0922 21 6 4.5737 -11.0598 -1.8646 22 7 4.4416 -12.3442 -1.4091 23 1 5.1784 -12.9292 -1.1730 24 6 3.1116 -12.6811 -1.3304 25 7 2.4748 -13.7828 -0.9557 26 6 1.1613 -13.8600 -0.9689 27 6 0.3753 -12.7927 -1.3762 28 6 0.9816 -11.6177 -1.7781 29 6 2.3771 -11.5580 -1.7561 30 6 1.8344 -3.6633 0.1636 31 1 -0.4850 0.8401 -0.0004 32 1 0.0769 -1.3511 -1.6626 33 1 -0.6959 -2.6125 -0.6686 34 1 1.2386 -3.0291 -2.9947 35 1 -0.4859 -3.4706 -2.9423 36 1 1.4188 -6.3980 0.0555 37 1 3.1536 -6.0077 0.1359 38 1 2.4927 -6.5767 -2.5504 39 1 3.9283 -8.7730 -3.1647 40 1 2.1935 -9.1638 -3.2441 41 1 5.5132 -10.5496 -2.0177 42 1 0.6840 -14.7766 -0.6551 43 1 -0.7014 -12.8787 -1.3785 44 1 0.3940 -10.7705 -2.0998 45 1 1.1061 -4.0633 0.8691 46 1 2.7975 -3.5415 0.6591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715297594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:59 Heat of formation + Delta-G solvation = -8.739666 kcal Electronic energy + Delta-G solvation = -29002.887721 eV Core-core repulsion = 24892.859007 eV Total energy + Delta-G solvation = -4110.028714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.46500 -40.71213 -39.87637 -38.67895 -36.48213 -35.68076 -34.41493 -33.37287 -32.65830 -31.97634 -30.53905 -29.36404 -28.34296 -26.65972 -24.94806 -24.60489 -23.49603 -23.39620 -21.92111 -21.32087 -20.23148 -19.17556 -18.86671 -17.98533 -17.69646 -17.46957 -17.13196 -16.90015 -16.69176 -16.18604 -15.98481 -15.88100 -15.52362 -15.48337 -15.14943 -14.97611 -14.58283 -14.24183 -14.23577 -14.06029 -13.69086 -13.62489 -13.19599 -13.16627 -13.12403 -12.98682 -12.67814 -12.52276 -12.34595 -12.15502 -12.06483 -11.86202 -11.33841 -11.31059 -10.84669 -10.77134 -10.53154 -10.35284 -10.01388 -9.36487 -8.87802 -8.75497 -7.91263 -5.38922 0.09358 0.45542 1.47517 1.48064 1.57444 1.60902 1.79446 1.92894 2.38121 2.51319 2.80946 2.98087 3.23525 3.50568 3.63642 3.74437 3.84787 4.00085 4.05613 4.09922 4.15658 4.25730 4.29135 4.43823 4.51070 4.54270 4.57139 4.64008 4.65601 4.72782 4.75720 4.82102 4.91171 4.92305 5.07206 5.08355 5.25516 5.37280 5.49167 5.51307 5.55925 5.61649 5.62532 6.03995 6.26559 6.34360 6.45228 6.69853 7.06036 7.09289 7.39943 7.74158 8.27696 9.14619 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.027164 B = 0.001868 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.544691 B =14988.268912 C =15445.485410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.052 4.052 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.268 1.268 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.073 0.927 15 C 0.142 3.858 16 N -0.714 5.714 17 C 0.510 3.490 18 O -0.584 6.584 19 C -0.055 4.055 20 C -0.171 4.171 21 C 0.084 3.916 22 N -0.576 5.576 23 H 0.430 0.570 24 C 0.253 3.747 25 N -0.526 5.526 26 C 0.122 3.878 27 C -0.201 4.201 28 C -0.046 4.046 29 C -0.157 4.157 30 C 0.115 3.885 31 H 0.251 0.749 32 H 0.067 0.933 33 H -0.003 1.003 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.215 0.785 42 H 0.188 0.812 43 H 0.164 0.836 44 H 0.141 0.859 45 H 0.014 0.986 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.279 -23.919 -10.647 27.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.308 6.308 13 C 0.022 3.978 14 H 0.091 0.909 15 C 0.017 3.983 16 N -0.366 5.366 17 C 0.298 3.702 18 O -0.464 6.464 19 C -0.094 4.094 20 C -0.179 4.179 21 C -0.042 4.042 22 N -0.183 5.183 23 H 0.269 0.731 24 C 0.020 3.980 25 N -0.240 5.240 26 C -0.043 4.043 27 C -0.222 4.222 28 C -0.073 4.073 29 C -0.164 4.164 30 C -0.011 4.011 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.015 0.985 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.252 0.748 39 H 0.158 0.842 40 H 0.136 0.864 41 H 0.232 0.768 42 H 0.204 0.796 43 H 0.181 0.819 44 H 0.158 0.842 45 H 0.032 0.968 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.791 -24.992 -9.554 27.867 hybrid contribution -0.218 2.010 0.167 2.029 sum 7.573 -22.982 -9.387 25.954 Atomic orbital electron populations 1.70197 1.06749 1.26060 1.55221 1.25855 0.96124 1.01703 1.01073 0.85187 0.77961 0.79072 0.77734 1.20762 1.22395 1.19276 1.19563 0.93031 0.85508 1.41390 0.90899 1.44357 1.33668 1.01888 1.53821 1.21331 0.87849 0.98523 0.90705 1.23147 1.00823 0.83560 0.94730 1.87807 1.41868 1.31941 1.69175 1.22630 0.87462 0.94168 0.93559 0.90920 1.21085 1.00941 0.86964 0.89268 1.45852 1.71314 1.08911 1.10553 1.21335 0.75339 0.82225 0.91341 1.90707 1.52970 1.76224 1.26486 1.19986 1.06615 0.88014 0.94826 1.19779 0.91582 0.95279 1.11238 1.22264 1.00375 0.83369 0.98213 1.41563 1.04639 1.14060 1.58062 0.73079 1.18722 0.86453 0.91817 1.01032 1.66484 1.12381 1.25678 1.19477 1.22989 0.86699 0.99764 0.94809 1.22191 1.02687 0.93803 1.03548 1.21267 0.92336 0.98470 0.95184 1.20075 0.94619 0.95794 1.05962 1.21620 0.98604 0.86399 0.94517 0.93952 0.91428 0.98537 0.92839 0.87325 0.92799 0.89836 0.74762 0.84219 0.86435 0.76835 0.79568 0.81889 0.84154 0.96840 0.91053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.63 11.14 21.65 0.24 -54.39 16 2 C -0.05 -2.85 4.95 84.86 0.42 -2.43 16 3 Si 0.97 43.70 29.59 68.60 2.03 45.73 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.27 -14.23 9.65 84.03 0.81 -13.42 16 8 H 0.07 3.77 7.88 -2.91 -0.02 3.74 16 9 N -0.61 -30.32 3.05 -697.54 -2.13 -32.44 16 10 C 0.14 6.70 5.45 86.35 0.47 7.17 16 11 C 0.05 1.95 6.98 72.08 0.50 2.45 16 12 O -0.39 -13.24 10.33 -148.98 -1.54 -14.78 16 13 C 0.08 2.59 2.81 30.70 0.09 2.68 16 14 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.14 3.97 5.34 86.38 0.46 4.43 16 16 N -0.71 -15.51 5.50 -463.07 -2.55 -18.06 16 17 C 0.51 11.76 7.82 87.66 0.69 12.44 16 18 O -0.58 -19.40 16.03 -3.04 -0.05 -19.45 16 19 C -0.05 -0.78 6.23 29.10 0.18 -0.60 16 20 C -0.17 -3.26 4.81 -18.66 -0.09 -3.35 16 21 C 0.08 1.26 11.74 82.99 0.97 2.23 16 22 N -0.58 -10.00 6.05 -192.33 -1.16 -11.16 16 23 H 0.43 5.06 8.96 -92.71 -0.83 4.23 16 24 C 0.25 6.05 8.43 133.93 1.13 7.18 16 25 N -0.53 -12.66 10.39 -192.73 -2.00 -14.66 16 26 C 0.12 2.30 11.15 84.83 0.95 3.25 16 27 C -0.20 -3.54 10.10 22.36 0.23 -3.31 16 28 C -0.05 -0.97 10.22 22.61 0.23 -0.74 16 29 C -0.16 -3.70 6.37 -20.18 -0.13 -3.83 16 30 C 0.11 4.69 6.02 86.36 0.52 5.21 16 31 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.07 3.55 6.14 -2.39 -0.01 3.53 16 33 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 34 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.11 3.26 8.14 -2.38 -0.02 3.24 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.42 6.88 8.47 -92.71 -0.79 6.09 16 39 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.12 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.22 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 44 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 Total: -1.00 -79.63 384.71 -0.32 -79.95 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.59 Total: 19.91 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 7.43 Total: 19.35 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -7.60 Total: -130.71 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -1.59 Total: -34.22 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -79.63 -0.32 -79.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715297594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.209 kcal (2) G-P(sol) polarization free energy of solvation -79.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds