Wall clock time and date at job start Wed Apr 1 2020 02:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35372 * 117.00334 * 2 1 4 4 C 1.36092 * 125.58338 * 180.02562 * 3 2 1 5 5 C 1.39905 * 107.17733 * 180.02562 * 4 3 2 6 6 C 1.37821 * 106.67885 * 359.97438 * 5 4 3 7 7 C 1.46134 * 126.03378 * 179.97438 * 6 5 4 8 8 O 1.21774 * 119.99749 * 353.46522 * 7 6 5 9 9 N 1.34775 * 120.00374 * 173.47012 * 7 6 5 10 10 C 1.46497 * 119.99652 * 4.01344 * 9 7 6 11 11 C 1.52998 * 109.47179 * 83.27194 * 10 9 7 12 12 N 1.46509 * 109.47234 * 179.97438 * 11 10 9 13 13 C 1.36928 * 120.00139 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00204 * 0.02562 * 13 12 11 15 15 C 1.38813 * 120.00048 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00086 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99985 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47348 * 89.99844 * 17 15 13 19 19 H 1.48506 * 109.47032 * 209.99996 * 17 15 13 20 20 H 1.48500 * 109.47169 * 329.99814 * 17 15 13 21 21 C 1.46497 * 119.99874 * 184.01692 * 9 7 6 22 22 C 1.50694 * 109.47380 * 86.01068 * 21 9 7 23 23 C 1.38237 * 119.99520 * 274.08155 * 22 21 9 24 24 C 1.38238 * 120.00014 * 179.76720 * 23 22 21 25 25 C 1.38243 * 119.99646 * 0.48456 * 24 23 22 26 26 C 1.38235 * 119.99832 * 359.78588 * 25 24 23 27 27 C 1.38232 * 120.00414 * 94.35455 * 22 21 9 28 28 O 1.34015 * 125.57330 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.46878 * 60.00040 * 1 2 3 30 30 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46941 * 299.99932 * 1 2 3 32 32 H 1.08005 * 126.40587 * 0.25291 * 4 3 2 33 33 H 1.08008 * 126.66110 * 180.02562 * 5 4 3 34 34 H 1.09004 * 109.46917 * 203.27344 * 10 9 7 35 35 H 1.09003 * 109.47632 * 323.27319 * 10 9 7 36 36 H 1.08990 * 109.47216 * 299.99924 * 11 10 9 37 37 H 1.09004 * 109.47019 * 60.00301 * 11 10 9 38 38 H 0.96998 * 119.99608 * 359.97438 * 12 11 10 39 39 H 0.97002 * 120.00112 * 179.97438 * 16 15 13 40 40 H 1.09009 * 109.46718 * 206.00745 * 21 9 7 41 41 H 1.09000 * 109.47317 * 326.00518 * 21 9 7 42 42 H 1.08001 * 120.00168 * 359.97438 * 23 22 21 43 43 H 1.07996 * 120.00368 * 180.25059 * 24 23 22 44 44 H 1.07998 * 119.99668 * 179.76866 * 25 24 23 45 45 H 1.07996 * 119.99563 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00090 * 0.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4092 -0.0005 5 6 3.5985 2.7925 0.0003 6 6 2.3522 3.3810 0.0007 7 6 2.0794 4.8166 0.0020 8 8 2.9951 5.6102 0.1230 9 7 0.8145 5.2624 -0.1305 10 6 -0.2960 4.3087 -0.1875 11 6 -0.7006 3.9114 1.2336 12 7 -1.8116 2.9580 1.1766 13 6 -2.3451 2.4584 2.3345 14 1 -1.9472 2.7674 3.2898 15 6 -3.3981 1.5555 2.2805 16 7 -3.8834 1.1793 1.1163 17 14 -4.1263 0.8744 3.8601 18 1 -5.2314 1.7554 4.3159 19 1 -4.6524 -0.4923 3.6136 20 1 -3.0741 0.8185 4.9065 21 6 0.5501 6.7007 -0.2176 22 6 0.6820 7.1499 -1.6499 23 6 1.9210 7.5001 -2.1530 24 6 2.0429 7.9076 -3.4684 25 6 0.9242 7.9745 -4.2777 26 6 -0.3157 7.6297 -3.7729 27 6 -0.4367 7.2173 -2.4591 28 8 1.4264 2.3957 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.1528 0.6453 -0.0048 33 1 4.5515 3.3006 -0.0002 34 1 -1.1454 4.7697 -0.6916 35 1 0.0152 3.4209 -0.7381 36 1 0.1487 3.4504 1.7377 37 1 -1.0120 4.7991 1.7842 38 1 -2.1692 2.6808 0.3186 39 1 -4.6189 0.5480 1.0786 40 1 -0.4603 6.9064 0.1361 41 1 1.2681 7.2402 0.4001 42 1 2.7944 7.4521 -1.5195 43 1 3.0115 8.1772 -3.8626 44 1 1.0188 8.2964 -5.3042 45 1 -1.1897 7.6824 -4.4051 46 1 -1.4055 6.9484 -2.0646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717006808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:14 Heat of formation + Delta-G solvation = -21.812882 kcal Electronic energy + Delta-G solvation = -30761.611204 eV Core-core repulsion = 26618.722841 eV Total energy + Delta-G solvation = -4142.888363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.80733 -41.14136 -39.80137 -39.37266 -37.70732 -36.07972 -34.21277 -33.62289 -32.58391 -31.76972 -30.60605 -29.44708 -28.38316 -26.96307 -25.70775 -23.81579 -23.51689 -23.10255 -22.97360 -22.16789 -20.85692 -19.62520 -19.21828 -18.36395 -18.01955 -17.76356 -17.40743 -16.82550 -16.39959 -16.28931 -16.02820 -15.94937 -15.57231 -15.41358 -15.34400 -15.04451 -14.72691 -14.28603 -14.24620 -14.09618 -13.98850 -13.82757 -13.45606 -13.10584 -13.05633 -13.00149 -12.92004 -12.78604 -12.54656 -12.32785 -12.12417 -12.05856 -11.87262 -11.81941 -11.40846 -11.06253 -10.92155 -9.95123 -9.80990 -9.70444 -9.10043 -8.99644 -7.93636 -5.22027 -0.01178 0.34316 0.51351 1.24291 1.34607 1.47681 1.49697 1.56316 1.86091 2.06459 2.22653 2.57048 2.94430 3.39033 3.41631 3.79729 3.82741 3.91412 3.98793 4.12622 4.17368 4.22635 4.25385 4.29107 4.31992 4.33732 4.36700 4.52225 4.57571 4.60298 4.71306 4.76264 4.84233 4.85458 4.93637 5.08781 5.09698 5.17437 5.30851 5.32449 5.51251 5.56783 5.57491 5.62446 5.68886 6.09012 6.11906 6.17966 6.27489 6.89568 7.35988 8.04025 8.33290 9.28029 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.003826 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.961212 B = 7315.868253 C = 9048.442020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.268 6.268 3 C 0.203 3.797 4 C -0.244 4.244 5 C -0.073 4.073 6 C -0.135 4.135 7 C 0.609 3.391 8 O -0.546 6.546 9 N -0.591 5.591 10 C 0.115 3.885 11 C 0.152 3.848 12 N -0.729 5.729 13 C -0.241 4.241 14 H 0.064 0.936 15 C -0.054 4.054 16 N -0.955 5.955 17 Si 0.958 3.042 18 H -0.290 1.290 19 H -0.293 1.293 20 H -0.278 1.278 21 C 0.154 3.846 22 C -0.117 4.117 23 C -0.112 4.112 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.114 4.114 28 O -0.178 6.178 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.055 0.945 32 H 0.187 0.813 33 H 0.184 0.816 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.007 0.993 37 H 0.019 0.981 38 H 0.378 0.622 39 H 0.252 0.748 40 H 0.104 0.896 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.138 0.862 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.818 8.130 -10.013 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.182 6.182 3 C 0.106 3.894 4 C -0.263 4.263 5 C -0.094 4.094 6 C -0.185 4.185 7 C 0.399 3.601 8 O -0.427 6.427 9 N -0.320 5.320 10 C -0.008 4.008 11 C 0.024 3.976 12 N -0.372 5.372 13 C -0.373 4.373 14 H 0.082 0.918 15 C -0.248 4.248 16 N -0.605 5.605 17 Si 0.788 3.212 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.203 1.203 21 C 0.033 3.967 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.133 4.133 28 O -0.079 6.079 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.073 0.927 32 H 0.204 0.796 33 H 0.201 0.799 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.025 0.975 37 H 0.037 0.963 38 H 0.211 0.789 39 H 0.061 0.939 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.011 8.410 -9.748 17.607 hybrid contribution -1.077 -0.755 0.772 1.525 sum 10.934 7.655 -8.976 16.085 Atomic orbital electron populations 1.23171 0.74639 1.05721 1.02789 1.86324 1.24308 1.18908 1.88683 1.21464 0.90474 0.78919 0.98586 1.21070 0.91785 0.97201 1.16272 1.22197 0.97610 0.92723 0.96821 1.21928 0.87902 0.87594 1.21035 1.16552 0.82991 0.84443 0.76090 1.90804 1.44558 1.54606 1.52694 1.47779 1.05578 1.07511 1.71178 1.21776 0.89142 0.92621 0.97255 1.20928 0.89756 0.91906 0.94967 1.42178 1.37943 1.51541 1.05577 1.19380 1.11602 1.19241 0.87076 0.91796 1.25261 0.99673 1.00897 0.98975 1.69754 1.29137 1.37763 1.23841 0.85381 0.78339 0.77309 0.80138 1.21766 1.21890 1.20298 1.20532 1.03793 0.78909 0.93456 1.20218 0.94216 1.00977 0.96405 1.21301 0.97078 0.98282 0.96423 1.21429 0.99864 1.00057 0.93646 1.21509 0.92432 0.99084 1.00732 1.21449 0.98642 0.99218 0.95432 1.21308 0.98364 0.99091 0.94489 1.84385 1.36854 1.14253 1.72365 0.92102 0.85636 0.92660 0.79556 0.79902 0.88623 0.90017 0.97458 0.96298 0.78926 0.93876 0.87745 0.89178 0.86420 0.84461 0.83729 0.84028 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.74 113.37 1.22 2.21 16 2 O -0.27 -8.43 10.55 -64.42 -0.68 -9.11 16 3 C 0.20 6.41 7.86 67.32 0.53 6.94 16 4 C -0.24 -6.40 10.89 22.17 0.24 -6.16 16 5 C -0.07 -1.98 10.67 22.57 0.24 -1.74 16 6 C -0.13 -4.32 6.58 24.22 0.16 -4.16 16 7 C 0.61 19.84 7.54 86.29 0.65 20.49 16 8 O -0.55 -18.79 15.35 -4.59 -0.07 -18.86 16 9 N -0.59 -17.60 2.48 -831.46 -2.06 -19.66 16 10 C 0.12 3.67 5.08 86.38 0.44 4.11 16 11 C 0.15 5.94 6.08 86.38 0.52 6.47 16 12 N -0.73 -33.90 5.60 -343.44 -1.92 -35.82 16 13 C -0.24 -12.63 9.99 84.04 0.84 -11.79 16 14 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 15 C -0.05 -2.90 5.50 84.86 0.47 -2.43 16 16 N -0.95 -53.02 13.06 21.65 0.28 -52.74 16 17 Si 0.96 43.86 29.55 68.60 2.03 45.89 16 18 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 19 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.15 3.93 5.50 85.63 0.47 4.40 16 22 C -0.12 -2.87 5.43 -19.87 -0.11 -2.97 16 23 C -0.11 -2.76 9.55 22.27 0.21 -2.55 16 24 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 25 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16 26 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 27 C -0.11 -2.51 9.68 22.27 0.22 -2.29 16 28 O -0.18 -6.04 5.56 13.42 0.07 -5.96 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.13 3.44 8.14 -2.39 -0.02 3.42 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.19 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.18 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.10 2.80 8.02 -2.38 -0.02 2.79 16 35 H 0.08 2.77 5.40 -2.39 -0.01 2.75 16 36 H 0.01 0.32 7.04 -2.39 -0.02 0.30 16 37 H 0.02 0.75 8.14 -2.38 -0.02 0.74 16 38 H 0.38 18.27 7.67 -92.71 -0.71 17.56 16 39 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 40 H 0.10 2.34 7.96 -2.38 -0.02 2.33 16 41 H 0.09 2.34 7.46 -2.39 -0.02 2.32 16 42 H 0.12 3.12 7.07 -2.91 -0.02 3.10 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 46 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -62.09 392.38 4.71 -57.38 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.29 Total: 35.08 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 6.77 Total: 3.81 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -3.70 Total: -108.23 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.68 Total: -33.94 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.09 4.71 -57.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717006808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.567 kcal (2) G-P(sol) polarization free energy of solvation -62.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds