Wall clock time and date at job start Wed Apr 1 2020 02:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48492 * 109.47122 * 239.99534 * 3 2 1 5 5 H 1.48505 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47258 * 119.99154 * 3 2 1 7 7 C 1.38810 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00558 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.47416 * 125.65000 * 359.95482 * 9 7 2 11 11 C 1.54913 * 104.83321 * 204.16404 * 10 9 7 12 12 C 1.55150 * 101.58224 * 322.99090 * 11 10 9 13 13 O 1.42900 * 110.87488 * 277.06855 * 12 11 10 14 14 C 1.52999 * 110.72265 * 153.86275 * 12 11 10 15 15 N 1.46501 * 109.47349 * 190.02782 * 14 12 11 16 16 C 1.34778 * 119.99720 * 180.02562 * 15 14 12 17 17 O 1.21275 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99826 * 179.97438 * 16 15 14 19 19 C 1.50695 * 109.47347 * 179.97438 * 18 16 15 20 20 C 1.34231 * 126.56687 * 265.29611 * 19 18 16 21 21 N 1.36914 * 109.91596 * 180.15398 * 20 19 18 22 22 H 0.97001 * 124.99317 * 179.85497 * 21 20 19 23 23 C 1.37425 * 110.01799 * 359.57804 * 21 20 19 24 24 N 1.32665 * 133.18216 * 180.26776 * 23 21 20 25 25 C 1.31592 * 121.66446 * 179.97438 * 24 23 21 26 26 C 1.38660 * 121.58146 * 359.97438 * 25 24 23 27 27 C 1.38195 * 119.41601 * 0.02562 * 26 25 24 28 28 C 1.39695 * 118.04066 * 359.97438 * 27 26 25 29 29 C 1.47022 * 125.64284 * 179.97438 * 9 7 2 30 30 H 0.96996 * 119.99891 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36847 * 323.00803 * 10 9 7 32 32 H 1.08998 * 110.36639 * 85.32379 * 10 9 7 33 33 H 1.09002 * 111.00022 * 204.91317 * 11 10 9 34 34 H 1.08997 * 111.00143 * 81.06994 * 11 10 9 35 35 H 0.96694 * 114.00452 * 177.45127 * 13 12 11 36 36 H 1.08996 * 109.46573 * 70.02508 * 14 12 11 37 37 H 1.09004 * 109.47109 * 310.02841 * 14 12 11 38 38 H 0.96997 * 119.99660 * 359.97438 * 15 14 12 39 39 H 1.09001 * 109.46822 * 59.99417 * 18 16 15 40 40 H 1.09004 * 109.47270 * 299.99871 * 18 16 15 41 41 H 1.08004 * 125.04361 * 0.02562 * 20 19 18 42 42 H 1.07995 * 119.20072 * 180.02562 * 25 24 23 43 43 H 1.08006 * 120.29091 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.98059 * 180.02562 * 27 26 25 45 45 H 1.08995 * 109.88803 * 59.49188 * 29 9 7 46 46 H 1.08995 * 110.01491 * 298.39045 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0009 11 6 -0.4015 -3.9319 0.6138 12 6 0.7783 -4.7524 0.0290 13 8 0.4760 -5.2094 -1.2907 14 6 1.1233 -5.9307 0.9420 15 7 2.3790 -6.5411 0.4982 16 6 2.8817 -7.6037 1.1576 17 8 2.2948 -8.0542 2.1184 18 6 4.1731 -8.2319 0.7007 19 6 4.5129 -9.3923 1.6000 20 6 5.3161 -9.3625 2.6751 21 7 5.3880 -10.6083 3.2383 22 1 5.9094 -10.8342 4.0245 23 6 4.6080 -11.4906 2.5299 24 7 4.3433 -12.7830 2.6698 25 6 3.5430 -13.4179 1.8402 26 6 2.9349 -12.7677 0.7772 27 6 3.1724 -11.4207 0.5800 28 6 4.0251 -10.7666 1.4725 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5992 -1.7584 0.6161 32 1 -0.5275 -2.4874 -1.0174 33 1 -1.3590 -4.3325 0.2808 34 1 -0.3517 -3.8970 1.7021 35 1 1.1976 -5.6942 -1.7141 36 1 0.3241 -6.6706 0.8978 37 1 1.2339 -5.5761 1.9668 38 1 2.8482 -6.1809 -0.2706 39 1 4.9725 -7.4922 0.7448 40 1 4.0622 -8.5863 -0.3241 41 1 5.8311 -8.4862 3.0403 42 1 3.3549 -14.4705 1.9916 43 1 2.2813 -13.3092 0.1093 44 1 2.7116 -10.8891 -0.2395 45 1 2.5587 -3.8507 0.8836 46 1 2.5293 -3.8665 -0.9004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724430184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:52 Heat of formation + Delta-G solvation = 17.881876 kcal Electronic energy + Delta-G solvation = -29300.568458 eV Core-core repulsion = 25191.694140 eV Total energy + Delta-G solvation = -4108.874318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.79304 -39.83612 -38.47693 -37.95692 -35.14325 -34.15391 -33.70579 -32.13998 -31.65805 -29.91747 -29.61107 -28.51357 -27.17507 -25.58074 -23.92221 -23.53109 -22.78242 -21.17631 -20.17001 -19.91825 -19.53671 -18.49313 -17.50262 -17.04062 -16.96609 -16.32894 -16.21731 -15.52774 -15.38024 -15.13630 -14.87587 -14.75412 -14.34482 -13.92766 -13.61374 -13.57480 -13.41228 -13.14804 -12.98949 -12.92654 -12.68581 -12.46235 -12.19415 -12.10438 -11.70209 -11.59853 -11.06651 -10.88787 -10.79000 -10.58071 -10.37436 -10.19924 -10.10561 -9.75573 -9.73821 -9.61941 -9.42337 -9.05185 -8.67656 -8.66688 -8.20486 -6.88829 -5.68856 -3.11515 0.78414 1.16810 2.30242 2.54863 2.65700 3.26460 3.37617 3.41642 3.43438 3.70935 4.26061 4.39448 4.42776 4.44601 4.46998 4.71106 4.77227 4.84927 4.94814 5.02924 5.15502 5.18250 5.20850 5.34409 5.38337 5.46752 5.51732 5.62450 5.69968 5.88190 5.98641 6.04480 6.16182 6.21615 6.27426 6.35853 6.38492 6.48267 6.57853 6.62035 6.71525 7.03952 7.46208 7.53190 7.58021 7.79156 7.81746 7.92953 8.23435 8.31786 9.17309 9.77887 10.42207 11.34725 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.002053 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.348746 B =13636.464708 C =14381.145091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.010 4.010 3 Si 0.916 3.084 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.600 5.600 10 C 0.156 3.844 11 C -0.128 4.128 12 C 0.106 3.894 13 O -0.544 6.544 14 C 0.105 3.895 15 N -0.730 5.730 16 C 0.511 3.489 17 O -0.532 6.532 18 C -0.067 4.067 19 C -0.144 4.144 20 C 0.077 3.923 21 N -0.580 5.580 22 H 0.420 0.580 23 C 0.285 3.715 24 N -0.502 5.502 25 C 0.134 3.866 26 C -0.203 4.203 27 C -0.026 4.026 28 C -0.133 4.133 29 C 0.117 3.883 30 H 0.254 0.746 31 H 0.108 0.892 32 H 0.018 0.982 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.364 0.636 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.399 0.601 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.178 0.822 42 H 0.159 0.841 43 H 0.136 0.864 44 H 0.131 0.869 45 H 0.030 0.970 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.429 -23.254 1.212 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.064 3.936 13 O -0.348 6.348 14 C -0.019 4.019 15 N -0.383 5.383 16 C 0.297 3.703 17 O -0.407 6.407 18 C -0.107 4.107 19 C -0.152 4.152 20 C -0.050 4.050 21 N -0.186 5.186 22 H 0.257 0.743 23 C 0.052 3.948 24 N -0.215 5.215 25 C -0.032 4.032 26 C -0.225 4.225 27 C -0.052 4.052 28 C -0.140 4.140 29 C -0.010 4.010 30 H 0.064 0.936 31 H 0.126 0.874 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.210 0.790 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.195 0.805 42 H 0.176 0.824 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.048 0.952 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 8.871 -23.435 2.877 25.223 hybrid contribution 1.096 1.089 -0.832 1.754 sum 9.967 -22.347 2.045 24.554 Atomic orbital electron populations 1.69781 1.04897 1.25010 1.57134 1.24807 0.95750 0.97780 1.02223 0.86136 0.78399 0.82966 0.77862 1.21202 1.21516 1.21140 1.19001 0.90407 0.82387 1.43674 0.90582 1.44404 1.01993 0.99335 1.86842 1.21944 0.84442 0.91854 0.98640 1.23051 0.95634 0.98304 0.99753 1.22554 0.97826 0.91115 0.82099 1.86627 1.43130 1.76063 1.28966 1.22054 0.85470 0.95170 0.99175 1.46049 1.25803 1.32472 1.33959 1.20636 0.86686 0.79812 0.83206 1.90723 1.60964 1.61994 1.27054 1.19968 0.95903 0.95332 0.99547 1.19465 1.03455 0.92424 0.99850 1.21643 1.01543 0.87183 0.94605 1.41468 1.42259 1.07018 1.27883 0.74258 1.18358 0.95102 0.89044 0.92308 1.66463 1.18120 1.06967 1.29957 1.22408 0.91515 0.99335 0.89909 1.21838 1.04201 0.95250 1.01191 1.20941 0.93620 0.93770 0.96878 1.19656 1.01756 0.94403 0.98161 1.21906 0.93706 0.87223 0.98158 0.93566 0.87440 0.96378 0.91100 0.90627 0.78955 0.90889 0.90467 0.76693 0.87755 0.88049 0.80456 0.82389 0.84596 0.85077 0.95197 0.95962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.09 55.49 0.56 -26.03 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.60 -15.03 3.39 -170.07 -0.58 -15.61 16 10 C 0.16 3.79 5.88 -2.53 -0.01 3.77 16 11 C -0.13 -2.44 6.26 -24.58 -0.15 -2.59 16 12 C 0.11 1.75 0.93 -88.78 -0.08 1.67 16 13 O -0.54 -8.72 13.10 -35.23 -0.46 -9.18 16 14 C 0.11 1.50 4.80 -4.04 -0.02 1.48 16 15 N -0.73 -8.25 5.13 -60.30 -0.31 -8.56 16 16 C 0.51 6.15 7.82 -10.99 -0.09 6.07 16 17 O -0.53 -8.79 16.03 5.56 0.09 -8.70 16 18 C -0.07 -0.56 6.23 -29.04 -0.18 -0.74 16 19 C -0.14 -1.47 4.81 -102.76 -0.49 -1.97 16 20 C 0.08 0.67 11.74 -16.69 -0.20 0.47 16 21 N -0.58 -5.34 6.05 -12.14 -0.07 -5.41 16 22 H 0.42 2.71 8.96 -40.82 -0.37 2.34 16 23 C 0.29 3.39 8.43 -155.68 -1.31 2.08 16 24 N -0.50 -5.94 10.39 -12.27 -0.13 -6.06 16 25 C 0.13 1.25 11.14 -17.50 -0.20 1.06 16 26 C -0.20 -1.77 10.10 -39.44 -0.40 -2.16 16 27 C -0.03 -0.26 10.22 -39.05 -0.40 -0.66 16 28 C -0.13 -1.55 6.37 -105.11 -0.67 -2.21 16 29 C 0.12 2.26 5.76 -3.06 -0.02 2.24 16 30 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.08 1.37 7.96 -51.93 -0.41 0.95 16 35 H 0.36 4.20 8.44 45.56 0.38 4.59 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 38 H 0.40 3.57 7.47 -40.82 -0.30 3.27 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.18 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.03 0.57 7.82 -51.93 -0.41 0.17 16 46 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -37.03 383.03 -10.22 -47.25 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -5.60 Total: 8.04 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -4.47 Total: 1.78 kcal Atomic # 7 Polarization: -61.15 SS G_CDS: -0.53 Total: -61.68 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.37 Total: -17.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.03 -10.22 -47.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724430184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.129 kcal (2) G-P(sol) polarization free energy of solvation -37.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds