Wall clock time and date at job start Wed Apr 1 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00211 * 2 1 4 4 H 1.48492 * 109.47122 * 239.99534 * 3 2 1 5 5 H 1.48505 * 109.46979 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47258 * 119.99154 * 3 2 1 7 7 C 1.38810 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00558 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.47416 * 125.65000 * 359.95482 * 9 7 2 11 11 C 1.54913 * 104.83321 * 204.16404 * 10 9 7 12 12 C 1.55150 * 101.58224 * 322.99090 * 11 10 9 13 13 O 1.42900 * 110.87488 * 277.06855 * 12 11 10 14 14 C 1.52999 * 110.72265 * 153.86275 * 12 11 10 15 15 N 1.46501 * 109.47349 * 190.02782 * 14 12 11 16 16 C 1.34778 * 119.99720 * 180.02562 * 15 14 12 17 17 O 1.21275 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99826 * 179.97438 * 16 15 14 19 19 C 1.50695 * 109.47347 * 179.97438 * 18 16 15 20 20 C 1.34231 * 126.56687 * 265.29611 * 19 18 16 21 21 N 1.36914 * 109.91596 * 180.15398 * 20 19 18 22 22 H 0.97001 * 124.99317 * 179.85497 * 21 20 19 23 23 C 1.37425 * 110.01799 * 359.57804 * 21 20 19 24 24 N 1.32665 * 133.18216 * 180.26776 * 23 21 20 25 25 C 1.31592 * 121.66446 * 179.97438 * 24 23 21 26 26 C 1.38660 * 121.58146 * 359.97438 * 25 24 23 27 27 C 1.38195 * 119.41601 * 0.02562 * 26 25 24 28 28 C 1.39695 * 118.04066 * 359.97438 * 27 26 25 29 29 C 1.47022 * 125.64284 * 179.97438 * 9 7 2 30 30 H 0.96996 * 119.99891 * 0.02562 * 1 2 3 31 31 H 1.09000 * 110.36847 * 323.00803 * 10 9 7 32 32 H 1.08998 * 110.36639 * 85.32379 * 10 9 7 33 33 H 1.09002 * 111.00022 * 204.91317 * 11 10 9 34 34 H 1.08997 * 111.00143 * 81.06994 * 11 10 9 35 35 H 0.96694 * 114.00452 * 177.45127 * 13 12 11 36 36 H 1.08996 * 109.46573 * 70.02508 * 14 12 11 37 37 H 1.09004 * 109.47109 * 310.02841 * 14 12 11 38 38 H 0.96997 * 119.99660 * 359.97438 * 15 14 12 39 39 H 1.09001 * 109.46822 * 59.99417 * 18 16 15 40 40 H 1.09004 * 109.47270 * 299.99871 * 18 16 15 41 41 H 1.08004 * 125.04361 * 0.02562 * 20 19 18 42 42 H 1.07995 * 119.20072 * 180.02562 * 25 24 23 43 43 H 1.08006 * 120.29091 * 180.02562 * 26 25 24 44 44 H 1.08001 * 120.98059 * 180.02562 * 27 26 25 45 45 H 1.08995 * 109.88803 * 59.49188 * 29 9 7 46 46 H 1.08995 * 110.01491 * 298.39045 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0009 11 6 -0.4015 -3.9319 0.6138 12 6 0.7783 -4.7524 0.0290 13 8 0.4760 -5.2094 -1.2907 14 6 1.1233 -5.9307 0.9420 15 7 2.3790 -6.5411 0.4982 16 6 2.8817 -7.6037 1.1576 17 8 2.2948 -8.0542 2.1184 18 6 4.1731 -8.2319 0.7007 19 6 4.5129 -9.3923 1.6000 20 6 5.3161 -9.3625 2.6751 21 7 5.3880 -10.6083 3.2383 22 1 5.9094 -10.8342 4.0245 23 6 4.6080 -11.4906 2.5299 24 7 4.3433 -12.7830 2.6698 25 6 3.5430 -13.4179 1.8402 26 6 2.9349 -12.7677 0.7772 27 6 3.1724 -11.4207 0.5800 28 6 4.0251 -10.7666 1.4725 29 6 1.9318 -3.7275 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5992 -1.7584 0.6161 32 1 -0.5275 -2.4874 -1.0174 33 1 -1.3590 -4.3325 0.2808 34 1 -0.3517 -3.8970 1.7021 35 1 1.1976 -5.6942 -1.7141 36 1 0.3241 -6.6706 0.8978 37 1 1.2339 -5.5761 1.9668 38 1 2.8482 -6.1809 -0.2706 39 1 4.9725 -7.4922 0.7448 40 1 4.0622 -8.5863 -0.3241 41 1 5.8311 -8.4862 3.0403 42 1 3.3549 -14.4705 1.9916 43 1 2.2813 -13.3092 0.1093 44 1 2.7116 -10.8891 -0.2395 45 1 2.5587 -3.8507 0.8836 46 1 2.5293 -3.8665 -0.9004 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724430184.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:51 Heat of formation + Delta-G solvation = -10.208045 kcal Electronic energy + Delta-G solvation = -29301.786528 eV Core-core repulsion = 25191.694140 eV Total energy + Delta-G solvation = -4110.092388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.47239 -40.95460 -39.76632 -38.67219 -36.77366 -35.25326 -34.41927 -33.95365 -32.43451 -31.34135 -30.56335 -29.82416 -28.23148 -27.18275 -25.11620 -24.59759 -23.47461 -22.50040 -21.61176 -21.28827 -20.35010 -19.22085 -18.90777 -18.46588 -17.70950 -17.43426 -17.00728 -16.73083 -16.61043 -16.35219 -15.93257 -15.70897 -15.56371 -15.48458 -14.88432 -14.78505 -14.34842 -14.21511 -13.99306 -13.85218 -13.67310 -13.63217 -13.26207 -13.17286 -13.13830 -12.91335 -12.71428 -12.39128 -12.31417 -12.08647 -12.03091 -11.75764 -11.58479 -11.32699 -10.93834 -10.77046 -10.71260 -10.34804 -10.08263 -9.36560 -8.89095 -8.88352 -7.76056 -5.21046 0.09649 0.46001 1.48136 1.51320 1.57669 1.59314 1.76108 1.92356 2.35727 2.50589 2.98172 3.19779 3.34149 3.48276 3.63352 3.73076 3.74266 3.83790 3.95061 3.97796 4.06799 4.14263 4.25803 4.42856 4.50785 4.57422 4.61785 4.63312 4.73216 4.76661 4.84181 4.91303 4.97701 5.01281 5.06955 5.12661 5.37044 5.41783 5.47911 5.50995 5.62098 5.62222 5.80920 6.03954 6.30389 6.43875 6.60343 6.85247 7.09365 7.10463 7.34702 7.78340 8.42118 9.25852 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022920 B = 0.002053 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.348746 B =13636.464708 C =14381.145091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.071 4.071 3 Si 0.982 3.018 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.086 0.914 9 N -0.623 5.623 10 C 0.160 3.840 11 C -0.122 4.122 12 C 0.127 3.873 13 O -0.555 6.555 14 C 0.121 3.879 15 N -0.719 5.719 16 C 0.513 3.487 17 O -0.580 6.580 18 C -0.057 4.057 19 C -0.169 4.169 20 C 0.080 3.920 21 N -0.577 5.577 22 H 0.429 0.571 23 C 0.252 3.748 24 N -0.528 5.528 25 C 0.122 3.878 26 C -0.200 4.200 27 C -0.044 4.044 28 C -0.156 4.156 29 C 0.113 3.887 30 H 0.247 0.753 31 H 0.074 0.926 32 H -0.016 1.016 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.386 0.614 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.136 0.864 40 H 0.125 0.875 41 H 0.211 0.789 42 H 0.187 0.813 43 H 0.165 0.835 44 H 0.145 0.855 45 H 0.039 0.961 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.216 -24.391 0.610 26.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.263 4.263 3 Si 0.810 3.190 4 H -0.203 1.203 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.103 0.897 9 N -0.349 5.349 10 C 0.035 3.965 11 C -0.161 4.161 12 C 0.085 3.915 13 O -0.363 6.363 14 C -0.004 4.004 15 N -0.373 5.373 16 C 0.301 3.699 17 O -0.459 6.459 18 C -0.096 4.096 19 C -0.177 4.177 20 C -0.046 4.046 21 N -0.184 5.184 22 H 0.268 0.732 23 C 0.019 3.981 24 N -0.242 5.242 25 C -0.043 4.043 26 C -0.222 4.222 27 C -0.070 4.070 28 C -0.163 4.163 29 C -0.012 4.012 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.002 0.998 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.236 0.764 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.250 0.750 39 H 0.153 0.847 40 H 0.143 0.857 41 H 0.227 0.773 42 H 0.204 0.796 43 H 0.183 0.817 44 H 0.163 0.837 45 H 0.057 0.943 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.719 -24.609 2.248 26.936 hybrid contribution 0.543 1.353 -0.672 1.605 sum 11.262 -23.256 1.576 25.888 Atomic orbital electron populations 1.70051 1.06326 1.25096 1.58519 1.25683 0.96630 1.01185 1.02791 0.85101 0.77052 0.78608 0.78244 1.20329 1.22288 1.20123 1.19438 0.91113 0.83584 1.42568 0.89662 1.44699 1.02474 1.00923 1.86843 1.21642 0.84408 0.94120 0.96363 1.22902 0.97513 0.95602 1.00115 1.22174 0.95288 0.91137 0.82897 1.86593 1.44571 1.76420 1.28698 1.21670 0.86907 0.94037 0.97772 1.45905 1.24817 1.32254 1.34311 1.21304 0.87331 0.79094 0.82186 1.90712 1.62539 1.63336 1.29293 1.20015 0.94356 0.95175 1.00101 1.19766 1.04363 0.92466 1.01097 1.22248 1.00853 0.87653 0.93865 1.41576 1.41855 1.06985 1.28002 0.73181 1.18734 0.96389 0.89536 0.93426 1.66495 1.19228 1.07356 1.31089 1.23000 0.90922 1.00655 0.89736 1.22196 1.03830 0.95002 1.01132 1.21281 0.93796 0.94595 0.97326 1.20051 1.02292 0.95434 0.98558 1.22125 0.94738 0.85298 0.99044 0.94377 0.90843 0.99775 0.89862 0.89790 0.76409 0.90985 0.91628 0.74991 0.84656 0.85737 0.77281 0.79641 0.81717 0.83696 0.94280 0.94274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.63 10.09 21.65 0.22 -56.41 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 3 Si 0.98 44.91 29.55 68.60 2.03 46.93 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.24 -13.00 10.27 84.03 0.86 -12.13 16 8 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -31.18 3.39 -691.99 -2.35 -33.53 16 10 C 0.16 7.96 5.88 86.86 0.51 8.47 16 11 C -0.12 -4.59 6.26 31.98 0.20 -4.39 16 12 C 0.13 3.96 0.93 -9.60 -0.01 3.95 16 13 O -0.56 -16.48 13.10 -148.98 -1.95 -18.43 16 14 C 0.12 3.18 4.80 86.38 0.41 3.59 16 15 N -0.72 -14.10 5.13 -463.07 -2.38 -16.47 16 16 C 0.51 11.05 7.82 87.66 0.69 11.74 16 17 O -0.58 -18.42 16.03 -3.01 -0.05 -18.47 16 18 C -0.06 -0.75 6.23 29.10 0.18 -0.57 16 19 C -0.17 -3.14 4.81 -18.66 -0.09 -3.23 16 20 C 0.08 1.25 11.74 82.98 0.97 2.22 16 21 N -0.58 -10.18 6.05 -192.33 -1.16 -11.34 16 22 H 0.43 5.30 8.96 -92.71 -0.83 4.47 16 23 C 0.25 5.91 8.43 133.92 1.13 7.04 16 24 N -0.53 -12.38 10.39 -192.74 -2.00 -14.38 16 25 C 0.12 2.16 11.14 84.83 0.95 3.11 16 26 C -0.20 -3.19 10.10 22.36 0.23 -2.96 16 27 C -0.04 -0.83 10.22 22.61 0.23 -0.60 16 28 C -0.16 -3.50 6.37 -20.18 -0.13 -3.63 16 29 C 0.11 4.17 5.76 86.73 0.50 4.67 16 30 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 31 H 0.07 4.16 5.87 -2.39 -0.01 4.15 16 32 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 33 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 34 H 0.08 2.99 7.96 -2.39 -0.02 2.97 16 35 H 0.39 7.59 8.44 -74.06 -0.62 6.97 16 36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 1.92 8.03 -2.39 -0.02 1.90 16 38 H 0.41 5.79 7.47 -92.71 -0.69 5.10 16 39 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.21 1.61 8.06 -2.91 -0.02 1.58 16 42 H 0.19 1.95 8.06 -2.91 -0.02 1.92 16 43 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 44 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 45 H 0.04 1.39 7.82 -2.39 -0.02 1.38 16 46 H 0.04 1.33 8.07 -2.39 -0.02 1.31 16 Total: -1.00 -83.34 383.03 -1.65 -84.98 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -1.10 Total: 23.32 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 7.10 Total: 13.79 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -7.67 Total: -132.14 kcal Atomic # 8 Polarization: -34.89 SS G_CDS: -2.00 Total: -36.89 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -83.34 -1.65 -84.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724430184.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.777 kcal (2) G-P(sol) polarization free energy of solvation -83.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds