Wall clock time and date at job start Wed Apr 1 2020 02:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00348 * 2 1 4 4 H 1.48500 * 109.47544 * 240.00360 * 3 2 1 5 5 H 1.48497 * 109.47042 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47118 * 120.00309 * 3 2 1 7 7 C 1.38958 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00374 * 179.97438 * 9 7 2 11 11 O 1.21301 * 119.99959 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00348 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47319 * 180.02562 * 12 10 9 14 14 C 1.47963 * 111.00033 * 170.00229 * 13 12 10 15 15 C 1.53940 * 86.17926 * 222.41734 * 14 13 12 16 16 N 1.46496 * 113.72999 * 138.07976 * 15 14 13 17 17 C 1.34777 * 119.99711 * 156.90090 * 16 15 14 18 18 O 1.21279 * 120.00313 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99879 * 180.02562 * 17 16 15 20 20 H 1.09002 * 110.87685 * 303.51046 * 19 17 16 21 21 C 1.54370 * 110.82232 * 180.02562 * 19 17 16 22 22 C 1.51224 * 105.20323 * 268.11368 * 21 19 17 23 23 C 1.38737 * 130.69237 * 162.78628 * 22 21 19 24 24 C 1.38569 * 118.56051 * 180.02562 * 23 22 21 25 25 C 1.38233 * 118.98867 * 0.02562 * 24 23 22 26 26 N 1.31688 * 120.80025 * 0.02562 * 25 24 23 27 27 C 1.32290 * 122.03110 * 359.94959 * 26 25 24 28 28 C 1.51479 * 130.14415 * 180.02562 * 27 26 25 29 29 C 1.48189 * 111.07313 * 70.56834 * 13 12 10 30 30 H 0.97007 * 119.99858 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99686 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46674 * 59.99950 * 12 10 9 33 33 H 1.08994 * 109.47381 * 300.00394 * 12 10 9 34 34 H 1.09000 * 113.75613 * 108.10028 * 14 13 12 35 35 H 1.08992 * 113.86105 * 336.74885 * 14 13 12 36 36 H 1.08999 * 113.73537 * 269.25701 * 15 14 13 37 37 H 0.97000 * 120.00574 * 336.89868 * 16 15 14 38 38 H 1.09002 * 110.31468 * 149.15357 * 21 19 17 39 39 H 1.09004 * 110.31281 * 27.07169 * 21 19 17 40 40 H 1.08000 * 120.71712 * 0.05772 * 23 22 21 41 41 H 1.08006 * 120.51014 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.59865 * 179.97438 * 25 24 23 43 43 H 1.09007 * 110.29357 * 316.15622 * 28 27 26 44 44 H 1.08996 * 110.30281 * 78.19244 * 28 27 26 45 45 H 1.09002 * 113.75161 * 23.23726 * 29 13 12 46 46 H 1.08995 * 113.82917 * 251.81345 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0021 12 6 1.2436 -4.8630 -0.0010 13 7 2.1981 -5.9795 -0.0017 14 6 1.5088 -7.2666 0.2386 15 6 2.6862 -7.6051 1.1708 16 7 2.2812 -8.2544 2.4200 17 6 3.1628 -9.0117 3.1024 18 8 4.2912 -9.1561 2.6821 19 6 2.7460 -9.6802 4.3872 20 1 2.3737 -8.9476 5.1033 21 6 3.9147 -10.4898 4.9887 22 6 3.7589 -11.8862 4.4297 23 6 4.6608 -12.9381 4.3590 24 6 4.2459 -14.1290 3.7847 25 6 2.9536 -14.2264 3.3038 26 7 2.1246 -13.2066 3.3868 27 6 2.4823 -12.0538 3.9282 28 6 1.6905 -10.7765 4.1179 29 6 2.8950 -6.0856 1.3017 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0002 32 1 0.6159 -4.9204 -0.8903 33 1 0.6179 -4.9209 0.8896 34 1 1.4496 -7.9043 -0.6433 35 1 0.5545 -7.1658 0.7553 36 1 3.5073 -8.1193 0.6715 37 1 1.3786 -8.1393 2.7561 38 1 3.8426 -10.5074 6.0762 39 1 4.8690 -10.0630 4.6802 40 1 5.6642 -12.8313 4.7438 41 1 4.9222 -14.9681 3.7130 42 1 2.6200 -15.1498 2.8539 43 1 1.1255 -10.5442 3.2151 44 1 1.0177 -10.8716 4.9702 45 1 2.3472 -5.6368 2.1303 46 1 3.9412 -5.7816 1.2678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732116268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:20 Heat of formation + Delta-G solvation = 4.739317 kcal Electronic energy + Delta-G solvation = -28744.368721 eV Core-core repulsion = 24634.924499 eV Total energy + Delta-G solvation = -4109.444222 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.37422 -40.34949 -39.15200 -37.68407 -36.16544 -34.24789 -33.81500 -32.94991 -31.29904 -30.34100 -29.38818 -28.20278 -26.03988 -25.75458 -24.63345 -23.34767 -22.23503 -22.09064 -20.42685 -19.89619 -19.21883 -17.91880 -17.70892 -17.05360 -16.61166 -16.48010 -16.14768 -15.67509 -15.40393 -15.11381 -14.87593 -14.52790 -14.37049 -14.05060 -13.84417 -13.71234 -13.35254 -13.27886 -13.18246 -12.87519 -12.61786 -12.43054 -12.27304 -12.05833 -11.97966 -11.74906 -11.70140 -11.53502 -11.25802 -11.05774 -10.61056 -10.44875 -10.22555 -10.08194 -10.02209 -9.63069 -9.51140 -9.20147 -9.03514 -8.72206 -8.26566 -7.97954 -6.43172 -3.83951 0.76041 0.96838 2.38423 2.86816 3.19253 3.24960 3.29615 3.41157 3.54891 3.86954 3.98215 4.01396 4.18466 4.21501 4.42363 4.46189 4.50519 4.60268 4.77906 4.85949 4.90282 4.93414 4.98632 5.12238 5.18924 5.23146 5.27742 5.35992 5.41035 5.43823 5.48603 5.61351 5.64490 5.65549 5.76675 5.81126 5.90846 5.94655 6.16822 6.25551 6.34857 6.36806 6.57177 7.11525 7.28855 7.53739 7.65929 8.01812 8.03982 8.59754 9.16484 9.52186 10.04098 10.74465 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.001740 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.015379 B =16087.029204 C =16309.103981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.442 3.558 11 O -0.578 6.578 12 C 0.013 3.987 13 N -0.450 5.450 14 C -0.008 4.008 15 C 0.115 3.885 16 N -0.719 5.719 17 C 0.522 3.478 18 O -0.530 6.530 19 C -0.113 4.113 20 H 0.120 0.880 21 C -0.067 4.067 22 C -0.136 4.136 23 C -0.063 4.063 24 C -0.173 4.173 25 C 0.099 3.901 26 N -0.479 5.479 27 C 0.114 3.886 28 C -0.059 4.059 29 C 0.011 3.989 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.400 0.600 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.090 0.910 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -26.110 11.720 28.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.227 3.773 11 O -0.461 6.461 12 C -0.119 4.119 13 N -0.172 5.172 14 C -0.138 4.138 15 C 0.009 3.991 16 N -0.370 5.370 17 C 0.308 3.692 18 O -0.405 6.405 19 C -0.135 4.135 20 H 0.138 0.862 21 C -0.105 4.105 22 C -0.138 4.138 23 C -0.088 4.088 24 C -0.192 4.192 25 C -0.059 4.059 26 N -0.187 5.187 27 C -0.024 4.024 28 C -0.098 4.098 29 C -0.118 4.118 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.235 0.765 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.151 0.849 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.087 0.913 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.967 -26.016 10.459 28.057 hybrid contribution -0.447 0.984 1.085 1.532 sum 0.520 -25.032 11.544 27.571 Atomic orbital electron populations 1.69602 1.05927 1.28261 1.50564 1.25258 0.95641 0.99712 0.97297 0.85914 0.78762 0.80429 0.79099 1.19864 1.20965 1.19929 1.19655 0.93347 0.82215 1.47695 0.87980 1.41852 1.09144 1.04571 1.64493 1.19670 0.88395 0.84500 0.84695 1.90537 1.13608 1.86964 1.55027 1.22445 0.94989 0.92511 1.01926 1.68416 1.18235 0.99854 1.30726 1.24421 0.96117 0.93918 0.99358 1.23140 0.98620 0.93305 0.83992 1.46037 1.15356 1.50709 1.24889 1.20341 0.85345 0.78139 0.85422 1.90717 1.19907 1.61210 1.68680 1.22105 0.97394 0.97815 0.96155 0.86188 1.20891 0.99839 0.89873 0.99890 1.21398 0.95547 0.96784 1.00043 1.21075 0.99380 0.91849 0.96536 1.22085 0.97986 0.98582 1.00588 1.22618 0.90039 0.96599 0.96597 1.66818 1.37736 0.99565 1.14606 1.21727 0.93148 0.93295 0.94237 1.20958 0.96367 0.88381 1.04043 1.24332 1.02747 0.93460 0.91308 0.91825 0.77514 0.88981 0.92823 0.88600 0.90979 0.85989 0.76504 0.88983 0.88284 0.84892 0.84521 0.82573 0.89141 0.87995 0.91263 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 10 C 0.44 10.45 7.59 -10.99 -0.08 10.37 16 11 O -0.58 -15.80 15.13 5.54 0.08 -15.71 16 12 C 0.01 0.23 5.31 -4.98 -0.03 0.21 16 13 N -0.45 -7.38 5.95 -239.68 -1.43 -8.81 16 14 C -0.01 -0.10 7.73 -2.76 -0.02 -0.12 16 15 C 0.11 1.42 4.39 -69.63 -0.31 1.12 16 16 N -0.72 -6.89 5.26 -54.94 -0.29 -7.18 16 17 C 0.52 5.69 7.08 -10.98 -0.08 5.61 16 18 O -0.53 -8.05 15.15 5.56 0.08 -7.97 16 19 C -0.11 -0.81 3.49 -90.24 -0.31 -1.13 16 20 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 21 C -0.07 -0.52 6.07 -26.91 -0.16 -0.69 16 22 C -0.14 -1.27 6.16 -104.20 -0.64 -1.91 16 23 C -0.06 -0.52 10.17 -39.27 -0.40 -0.92 16 24 C -0.17 -1.30 10.12 -39.46 -0.40 -1.70 16 25 C 0.10 0.85 11.18 -17.61 -0.20 0.66 16 26 N -0.48 -5.22 10.35 -9.19 -0.10 -5.31 16 27 C 0.11 1.13 7.32 -82.04 -0.60 0.53 16 28 C -0.06 -0.42 6.30 -26.69 -0.17 -0.59 16 29 C 0.01 0.18 6.58 -2.63 -0.02 0.16 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.05 0.81 7.70 -51.93 -0.40 0.41 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.68 7.76 -51.93 -0.40 0.27 16 36 H 0.12 1.74 7.51 -51.93 -0.39 1.35 16 37 H 0.40 2.62 8.71 -40.82 -0.36 2.26 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.94 7.04 -51.93 -0.37 0.57 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.09 0.63 7.81 -51.92 -0.41 0.22 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.04 7.79 -51.93 -0.40 0.64 16 46 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -36.22 386.37 -10.19 -46.41 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.36 Total: 11.08 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -3.66 Total: 3.60 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -1.14 Total: -59.28 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.17 Total: -23.68 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.22 -10.19 -46.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732116268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.149 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds