Wall clock time and date at job start Wed Apr 1 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 120.00348 * 2 1 4 4 H 1.48500 * 109.47544 * 240.00360 * 3 2 1 5 5 H 1.48497 * 109.47042 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47118 * 120.00309 * 3 2 1 7 7 C 1.38958 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00374 * 179.97438 * 9 7 2 11 11 O 1.21301 * 119.99959 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00348 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.47319 * 180.02562 * 12 10 9 14 14 C 1.47963 * 111.00033 * 170.00229 * 13 12 10 15 15 C 1.53940 * 86.17926 * 222.41734 * 14 13 12 16 16 N 1.46496 * 113.72999 * 138.07976 * 15 14 13 17 17 C 1.34777 * 119.99711 * 156.90090 * 16 15 14 18 18 O 1.21279 * 120.00313 * 359.97438 * 17 16 15 19 19 C 1.50706 * 119.99879 * 180.02562 * 17 16 15 20 20 H 1.09002 * 110.87685 * 303.51046 * 19 17 16 21 21 C 1.54370 * 110.82232 * 180.02562 * 19 17 16 22 22 C 1.51224 * 105.20323 * 268.11368 * 21 19 17 23 23 C 1.38737 * 130.69237 * 162.78628 * 22 21 19 24 24 C 1.38569 * 118.56051 * 180.02562 * 23 22 21 25 25 C 1.38233 * 118.98867 * 0.02562 * 24 23 22 26 26 N 1.31688 * 120.80025 * 0.02562 * 25 24 23 27 27 C 1.32290 * 122.03110 * 359.94959 * 26 25 24 28 28 C 1.51479 * 130.14415 * 180.02562 * 27 26 25 29 29 C 1.48189 * 111.07313 * 70.56834 * 13 12 10 30 30 H 0.97007 * 119.99858 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99686 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.46674 * 59.99950 * 12 10 9 33 33 H 1.08994 * 109.47381 * 300.00394 * 12 10 9 34 34 H 1.09000 * 113.75613 * 108.10028 * 14 13 12 35 35 H 1.08992 * 113.86105 * 336.74885 * 14 13 12 36 36 H 1.08999 * 113.73537 * 269.25701 * 15 14 13 37 37 H 0.97000 * 120.00574 * 336.89868 * 16 15 14 38 38 H 1.09002 * 110.31468 * 149.15357 * 21 19 17 39 39 H 1.09004 * 110.31281 * 27.07169 * 21 19 17 40 40 H 1.08000 * 120.71712 * 0.05772 * 23 22 21 41 41 H 1.08006 * 120.51014 * 179.97438 * 24 23 22 42 42 H 1.07998 * 119.59865 * 179.97438 * 25 24 23 43 43 H 1.09007 * 110.29357 * 316.15622 * 28 27 26 44 44 H 1.08996 * 110.30281 * 78.19244 * 28 27 26 45 45 H 1.09002 * 113.75161 * 23.23726 * 29 13 12 46 46 H 1.08995 * 113.82917 * 251.81345 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0021 12 6 1.2436 -4.8630 -0.0010 13 7 2.1981 -5.9795 -0.0017 14 6 1.5088 -7.2666 0.2386 15 6 2.6862 -7.6051 1.1708 16 7 2.2812 -8.2544 2.4200 17 6 3.1628 -9.0117 3.1024 18 8 4.2912 -9.1561 2.6821 19 6 2.7460 -9.6802 4.3872 20 1 2.3737 -8.9476 5.1033 21 6 3.9147 -10.4898 4.9887 22 6 3.7589 -11.8862 4.4297 23 6 4.6608 -12.9381 4.3590 24 6 4.2459 -14.1290 3.7847 25 6 2.9536 -14.2264 3.3038 26 7 2.1246 -13.2066 3.3868 27 6 2.4823 -12.0538 3.9282 28 6 1.6905 -10.7765 4.1179 29 6 2.8950 -6.0856 1.3017 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 0.0002 32 1 0.6159 -4.9204 -0.8903 33 1 0.6179 -4.9209 0.8896 34 1 1.4496 -7.9043 -0.6433 35 1 0.5545 -7.1658 0.7553 36 1 3.5073 -8.1193 0.6715 37 1 1.3786 -8.1393 2.7561 38 1 3.8426 -10.5074 6.0762 39 1 4.8690 -10.0630 4.6802 40 1 5.6642 -12.8313 4.7438 41 1 4.9222 -14.9681 3.7130 42 1 2.6200 -15.1498 2.8539 43 1 1.1255 -10.5442 3.2151 44 1 1.0177 -10.8716 4.9702 45 1 2.3472 -5.6368 2.1303 46 1 3.9412 -5.7816 1.2678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732116268.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:19 Heat of formation + Delta-G solvation = -24.430647 kcal Electronic energy + Delta-G solvation = -28745.633625 eV Core-core repulsion = 24634.924499 eV Total energy + Delta-G solvation = -4110.709126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08108 -41.39243 -40.24725 -39.35551 -36.84508 -35.98254 -35.10132 -33.56594 -33.30380 -31.40045 -30.31474 -28.76845 -27.39398 -27.10741 -25.80313 -24.47674 -22.92164 -22.78113 -21.38043 -21.10458 -20.67328 -19.89929 -18.45705 -17.93765 -17.76540 -17.48220 -17.07266 -16.70729 -16.55434 -16.48668 -15.85947 -15.79133 -15.68506 -15.44755 -14.97648 -14.86511 -14.37857 -14.17182 -13.89448 -13.79342 -13.68626 -13.52390 -13.45792 -13.20352 -13.07778 -12.85725 -12.82067 -12.54171 -12.45143 -12.37258 -12.27351 -12.13968 -11.80389 -11.50827 -10.96167 -10.67340 -10.35496 -10.27634 -10.15283 -10.02470 -9.73897 -9.64326 -8.47619 -5.96163 0.15486 0.34120 1.38549 1.40777 1.51377 1.55074 2.02413 2.04872 2.28846 2.79930 2.84286 2.98940 3.18543 3.21887 3.43717 3.56061 3.59364 3.75628 3.83211 3.94307 4.05666 4.11596 4.21536 4.27684 4.34082 4.39324 4.43587 4.46283 4.54096 4.61456 4.68930 4.73829 4.81357 4.82982 4.89296 4.95807 5.01447 5.03015 5.22446 5.31002 5.33437 5.39751 5.43874 5.79217 5.85916 6.05014 6.52359 6.59608 7.02947 7.12028 7.23069 7.55067 8.11672 8.69361 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029159 B = 0.001740 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.015379 B =16087.029204 C =16309.103981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.076 0.924 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.622 6.622 12 C 0.027 3.973 13 N -0.483 5.483 14 C 0.010 3.990 15 C 0.129 3.871 16 N -0.704 5.704 17 C 0.516 3.484 18 O -0.580 6.580 19 C -0.102 4.102 20 H 0.158 0.842 21 C -0.066 4.066 22 C -0.155 4.155 23 C -0.079 4.079 24 C -0.172 4.172 25 C 0.083 3.917 26 N -0.508 5.508 27 C 0.090 3.910 28 C -0.054 4.054 29 C 0.007 3.993 30 H 0.278 0.722 31 H 0.397 0.603 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.420 0.580 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.164 0.836 42 H 0.179 0.821 43 H 0.092 0.908 44 H 0.130 0.870 45 H 0.076 0.924 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 -26.928 12.863 29.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.094 0.906 9 N -0.209 5.209 10 C 0.224 3.776 11 O -0.508 6.508 12 C -0.105 4.105 13 N -0.206 5.206 14 C -0.119 4.119 15 C 0.023 3.977 16 N -0.356 5.356 17 C 0.304 3.696 18 O -0.459 6.459 19 C -0.123 4.123 20 H 0.176 0.824 21 C -0.104 4.104 22 C -0.157 4.157 23 C -0.105 4.105 24 C -0.192 4.192 25 C -0.074 4.074 26 N -0.218 5.218 27 C -0.048 4.048 28 C -0.091 4.091 29 C -0.123 4.123 30 H 0.088 0.912 31 H 0.231 0.769 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.258 0.742 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.166 0.834 41 H 0.182 0.818 42 H 0.196 0.804 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.095 0.905 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.146 -26.849 11.617 29.277 hybrid contribution 0.254 1.153 0.712 1.378 sum -0.892 -25.697 12.329 28.515 Atomic orbital electron populations 1.69653 1.06688 1.29366 1.50131 1.25997 0.96563 1.02255 0.96248 0.85021 0.77814 0.76838 0.78854 1.19963 1.19263 1.19771 1.19593 0.92602 0.84129 1.50168 0.90646 1.41909 1.09309 1.04603 1.65126 1.20830 0.88269 0.86118 0.82339 1.90512 1.15985 1.87947 1.56398 1.22350 0.94592 0.89151 1.04376 1.68372 1.19497 1.01420 1.31359 1.24469 0.96656 0.90882 0.99844 1.22686 0.98707 0.91022 0.85292 1.45861 1.16182 1.49792 1.23767 1.21099 0.84608 0.77598 0.86291 1.90704 1.22187 1.62952 1.70097 1.22159 0.97296 0.98333 0.94510 0.82444 1.20937 0.99012 0.89016 1.01437 1.21717 0.95821 0.97685 1.00457 1.21447 1.00138 0.92176 0.96695 1.22412 0.98071 0.99150 0.99541 1.23106 0.90496 0.97076 0.96681 1.66844 1.38835 1.00438 1.15637 1.22244 0.94068 0.94046 0.94405 1.21043 0.96130 0.86680 1.05280 1.24255 1.00488 0.96002 0.91532 0.91241 0.76871 0.86893 0.89591 0.87239 0.87415 0.88393 0.74196 0.86303 0.90499 0.83443 0.81813 0.80437 0.88954 0.85225 0.90545 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.34 -19.14 9.68 84.04 0.81 -18.32 16 8 H 0.08 4.63 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -29.21 5.29 -306.98 -1.62 -30.83 16 10 C 0.44 20.86 7.59 87.66 0.67 21.53 16 11 O -0.62 -35.31 15.13 -3.09 -0.05 -35.36 16 12 C 0.03 0.89 5.31 85.56 0.45 1.34 16 13 N -0.48 -15.39 5.95 -912.20 -5.42 -20.81 16 14 C 0.01 0.21 7.73 86.41 0.67 0.87 16 15 C 0.13 3.11 4.39 46.56 0.20 3.32 16 16 N -0.70 -12.19 5.26 -446.12 -2.35 -14.54 16 17 C 0.52 10.78 7.08 87.66 0.62 11.40 16 18 O -0.58 -18.18 15.15 -3.03 -0.05 -18.22 16 19 C -0.10 -1.23 3.49 -10.55 -0.04 -1.27 16 20 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 21 C -0.07 -0.96 6.07 30.48 0.18 -0.77 16 22 C -0.15 -2.80 6.16 -19.59 -0.12 -2.92 16 23 C -0.08 -1.28 10.17 22.47 0.23 -1.05 16 24 C -0.17 -2.42 10.12 22.35 0.23 -2.20 16 25 C 0.08 1.37 11.18 84.71 0.95 2.32 16 26 N -0.51 -10.72 10.35 -182.97 -1.89 -12.62 16 27 C 0.09 1.70 7.32 42.72 0.31 2.01 16 28 C -0.05 -0.62 6.30 30.62 0.19 -0.42 16 29 C 0.01 0.23 6.58 86.36 0.57 0.80 16 30 H 0.28 13.92 8.31 -92.70 -0.77 13.15 16 31 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 32 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.09 2.30 7.70 -2.39 -0.02 2.28 16 34 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.11 1.48 7.76 -2.39 -0.02 1.46 16 36 H 0.10 2.89 7.51 -2.39 -0.02 2.87 16 37 H 0.42 4.01 8.71 -92.71 -0.81 3.21 16 38 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.48 7.04 -2.39 -0.02 1.46 16 40 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.09 1.03 7.81 -2.38 -0.02 1.01 16 44 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 2.25 7.79 -2.39 -0.02 2.23 16 46 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 Total: -1.00 -83.37 386.37 -3.18 -86.55 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: -0.51 Total: 32.95 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 6.40 Total: 16.54 kcal Atomic # 7 Polarization: -116.50 SS G_CDS: -11.00 Total: -127.51 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.09 Total: -53.58 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -83.37 -3.18 -86.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732116268.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.121 kcal (2) G-P(sol) polarization free energy of solvation -83.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds