Wall clock time and date at job start Wed Apr 1 2020 02:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99889 * 2 1 4 4 H 1.48500 * 109.46924 * 274.43167 * 3 2 1 5 5 H 1.48498 * 109.47254 * 34.43277 * 3 2 1 6 6 H 1.48499 * 109.46831 * 154.43391 * 3 2 1 7 7 C 1.38808 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00551 * 163.18230 * 7 2 1 9 9 N 1.36946 * 119.99804 * 343.18003 * 7 2 1 10 10 C 1.47152 * 120.98026 * 333.59900 * 9 7 2 11 11 C 1.53298 * 108.38100 * 230.55512 * 10 9 7 12 12 O 1.42963 * 109.22276 * 307.69971 * 11 10 9 13 13 C 1.42958 * 114.16602 * 62.58263 * 12 11 10 14 14 H 1.08998 * 109.51794 * 57.39324 * 13 12 11 15 15 C 1.52999 * 109.50984 * 177.49499 * 13 12 11 16 16 N 1.46503 * 109.47397 * 299.99901 * 15 13 12 17 17 C 1.34770 * 120.00172 * 180.02562 * 16 15 13 18 18 O 1.21281 * 120.00258 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00023 * 179.97438 * 17 16 15 20 20 C 1.50692 * 109.47320 * 179.97438 * 19 17 16 21 21 N 1.30248 * 126.10667 * 269.69088 * 20 19 17 22 22 N 1.39868 * 110.08562 * 179.89845 * 21 20 19 23 23 H 0.97005 * 125.46481 * 180.13575 * 22 21 20 24 24 C 1.37039 * 109.07849 * 0.37420 * 22 21 20 25 25 C 1.39287 * 133.85267 * 179.78341 * 24 22 21 26 26 C 1.36597 * 119.85158 * 179.97438 * 25 24 22 27 27 C 1.38958 * 120.81585 * 0.02562 * 26 25 24 28 28 C 1.36469 * 120.62595 * 359.97438 * 27 26 25 29 29 C 1.39943 * 119.64099 * 0.02562 * 28 27 26 30 30 C 1.47152 * 120.97893 * 153.61827 * 9 7 2 31 31 H 0.97010 * 120.00023 * 359.97438 * 1 2 3 32 32 H 1.08991 * 109.68331 * 350.27862 * 10 9 7 33 33 H 1.08994 * 109.68077 * 110.80210 * 10 9 7 34 34 H 1.09005 * 109.51347 * 187.77295 * 11 10 9 35 35 H 1.09006 * 109.51340 * 67.62223 * 11 10 9 36 36 H 1.08996 * 109.47396 * 60.00099 * 15 13 12 37 37 H 1.09009 * 109.47106 * 179.97438 * 15 13 12 38 38 H 0.97007 * 119.99565 * 359.97438 * 16 15 13 39 39 H 1.08996 * 109.47254 * 300.00088 * 19 17 16 40 40 H 1.08999 * 109.46970 * 59.99616 * 19 17 16 41 41 H 1.07999 * 120.07588 * 0.02822 * 25 24 22 42 42 H 1.07996 * 119.58616 * 180.02562 * 26 25 24 43 43 H 1.07995 * 119.68728 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.17719 * 179.97438 * 28 27 26 45 45 H 1.08994 * 109.68576 * 9.72146 * 30 9 7 46 46 H 1.09001 * 109.68172 * 249.16317 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4040 2.1005 -1.3959 5 1 1.4976 2.6238 0.7916 6 1 3.5914 1.4149 0.6042 7 6 2.0102 -1.2021 -0.0005 8 1 3.0556 -1.2221 -0.2711 9 7 1.3694 -2.3629 0.3421 10 6 0.1979 -2.3469 1.2324 11 6 0.4259 -3.3714 2.3498 12 8 0.7652 -4.6331 1.7695 13 6 1.9807 -4.6232 1.0169 14 1 2.8008 -4.2922 1.6541 15 6 2.2726 -6.0330 0.4992 16 7 2.4082 -6.9512 1.6328 17 6 2.6691 -8.2555 1.4160 18 8 2.7912 -8.6693 0.2825 19 6 2.8091 -9.1999 2.5821 20 6 3.0966 -10.5885 2.0722 21 7 2.2107 -11.4975 1.7800 22 7 2.8457 -12.6615 1.3349 23 1 2.3979 -13.4760 1.0572 24 6 4.2023 -12.4689 1.3589 25 6 5.2963 -13.2678 1.0351 26 6 6.5627 -12.7738 1.1700 27 6 6.7768 -11.4796 1.6283 28 6 5.7243 -10.6740 1.9531 29 6 4.4173 -11.1571 1.8236 30 6 1.8323 -3.6629 -0.1688 31 1 -0.4851 0.8401 0.0004 32 1 0.0784 -1.3533 1.6641 33 1 -0.6959 -2.6117 0.6677 34 1 -0.4847 -3.4751 2.9400 35 1 1.2402 -3.0350 2.9916 36 1 1.4531 -6.3626 -0.1393 37 1 3.1993 -6.0246 -0.0749 38 1 2.3109 -6.6201 2.5394 39 1 3.6287 -8.8700 3.2205 40 1 1.8825 -9.2085 3.1559 41 1 5.1437 -14.2754 0.6773 42 1 7.4078 -13.3969 0.9173 43 1 7.7858 -11.1075 1.7276 44 1 5.8991 -9.6694 2.3091 45 1 2.7951 -3.5407 -0.6648 46 1 1.1031 -4.0608 -0.8744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732385547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:46 Heat of formation + Delta-G solvation = 29.221590 kcal Electronic energy + Delta-G solvation = -28939.761925 eV Core-core repulsion = 24831.379334 eV Total energy + Delta-G solvation = -4108.382591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55816 -39.63865 -38.43970 -37.41214 -34.92150 -34.28017 -33.61373 -31.66823 -30.97034 -30.43970 -29.97452 -28.68408 -27.35193 -25.31930 -23.30940 -23.20156 -22.45814 -22.01139 -21.09209 -20.03421 -19.47701 -18.13316 -17.24760 -17.17148 -16.85578 -16.16085 -15.88691 -15.51935 -15.13328 -15.08182 -14.88858 -14.60751 -14.35334 -14.17669 -13.96019 -13.71054 -13.41388 -13.19458 -13.09887 -12.85923 -12.67589 -12.24038 -12.15515 -12.02419 -11.56528 -11.36446 -11.14637 -10.96164 -10.87307 -10.72762 -10.49017 -10.41985 -10.30801 -10.01057 -9.88888 -9.65370 -9.09759 -8.97186 -8.93019 -8.56817 -8.24865 -6.77769 -5.86858 -3.30562 0.68164 1.25146 2.13061 2.41912 2.64703 3.25240 3.32384 3.39730 3.41635 3.56542 4.10359 4.21743 4.26801 4.40983 4.42328 4.70090 4.78477 4.94187 5.08255 5.09455 5.13070 5.16389 5.30829 5.34162 5.46611 5.50199 5.55551 5.68943 5.78842 5.84856 6.01645 6.04871 6.13615 6.17221 6.24697 6.27375 6.34752 6.46561 6.51533 6.57887 6.73682 7.03834 7.07912 7.35490 7.49228 7.54413 7.68396 7.82801 8.24555 8.30909 9.08802 9.71577 10.28353 11.21284 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.001880 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.496483 B =14889.976551 C =15560.434067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.065 3.935 14 H 0.059 0.941 15 C 0.131 3.869 16 N -0.718 5.718 17 C 0.516 3.484 18 O -0.534 6.534 19 C -0.065 4.065 20 C 0.125 3.875 21 N -0.237 5.237 22 N -0.508 5.508 23 H 0.440 0.560 24 C 0.129 3.871 25 C -0.144 4.144 26 C -0.070 4.070 27 C -0.161 4.161 28 C -0.036 4.036 29 C -0.164 4.164 30 C 0.121 3.879 31 H 0.255 0.745 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.405 0.595 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.064 0.936 46 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.243 -23.976 8.401 27.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.077 0.923 15 C 0.008 3.992 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.411 6.411 19 C -0.106 4.106 20 C -0.054 4.054 21 N -0.051 5.051 22 N -0.223 5.223 23 H 0.284 0.716 24 C 0.013 3.987 25 C -0.166 4.166 26 C -0.091 4.091 27 C -0.181 4.181 28 C -0.057 4.057 29 C -0.172 4.172 30 C -0.006 4.006 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.239 0.761 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.082 0.918 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 8.826 -24.554 7.519 27.154 hybrid contribution 0.924 1.022 0.131 1.384 sum 9.750 -23.532 7.650 26.596 Atomic orbital electron populations 1.70039 1.05284 1.25660 1.53681 1.25058 0.95355 0.98515 1.00766 0.86242 0.79137 0.83450 0.77720 1.21348 1.21482 1.20370 1.19190 0.92597 0.84423 1.42250 0.91345 1.44068 1.33660 1.01034 1.53005 1.21442 0.89156 0.98286 0.89788 1.23324 0.99028 0.84908 0.96522 1.87780 1.41313 1.32669 1.69127 1.22807 0.87544 0.93831 0.95282 0.92285 1.21429 1.02078 0.87220 0.88519 1.45863 1.72273 1.07879 1.10941 1.20205 0.76974 0.82566 0.90269 1.90747 1.49733 1.76734 1.23854 1.20053 1.05893 0.87279 0.97409 1.22630 0.89326 0.94761 0.98638 1.76522 1.21261 0.92779 1.14537 1.45837 1.02334 1.13936 1.60176 0.71586 1.18842 0.85585 0.95530 0.98740 1.19817 0.90342 0.99775 1.06710 1.20720 0.96016 0.95665 0.96708 1.20666 0.98995 0.94594 1.03813 1.20372 0.89961 0.99292 0.96055 1.19695 0.93834 0.94113 1.09513 1.21449 0.98961 0.87240 0.92971 0.93495 0.88797 0.95372 0.90030 0.94067 0.90758 0.90167 0.76079 0.86462 0.86560 0.85755 0.85388 0.85540 0.85529 0.91769 0.95247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.74 11.15 55.49 0.62 -25.12 16 2 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 3 Si 0.91 21.18 29.59 -169.99 -5.03 16.15 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.85 9.65 -15.06 -0.15 -6.99 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.62 3.05 -171.83 -0.52 -15.14 16 10 C 0.14 3.25 5.44 -3.53 -0.02 3.23 16 11 C 0.04 0.74 6.98 37.31 0.26 1.00 16 12 O -0.39 -6.99 10.13 -35.23 -0.36 -7.35 16 13 C 0.07 1.09 2.87 -26.58 -0.08 1.02 16 14 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 15 C 0.13 1.93 5.37 -4.04 -0.02 1.90 16 16 N -0.72 -8.79 5.45 -60.29 -0.33 -9.12 16 17 C 0.52 6.73 7.82 -10.98 -0.09 6.65 16 18 O -0.53 -9.37 16.03 5.56 0.09 -9.28 16 19 C -0.06 -0.61 6.30 -29.04 -0.18 -0.79 16 20 C 0.13 1.52 5.92 -80.19 -0.48 1.04 16 21 N -0.24 -3.08 12.55 34.83 0.44 -2.64 16 22 N -0.51 -5.42 7.37 32.36 0.24 -5.18 16 23 H 0.44 3.23 8.96 -182.77 -1.64 1.59 16 24 C 0.13 1.39 7.34 -84.17 -0.62 0.78 16 25 C -0.14 -1.20 10.03 -39.78 -0.40 -1.60 16 26 C -0.07 -0.52 9.96 -39.91 -0.40 -0.92 16 27 C -0.16 -1.29 9.97 -39.95 -0.40 -1.69 16 28 C -0.04 -0.35 10.07 -39.58 -0.40 -0.74 16 29 C -0.16 -1.90 6.33 -105.21 -0.67 -2.56 16 30 C 0.12 2.48 6.02 -3.53 -0.02 2.46 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 32 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.40 4.07 8.35 -40.82 -0.34 3.73 16 39 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 45 H 0.06 1.25 7.96 -51.93 -0.41 0.83 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -35.19 384.77 -10.54 -45.74 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.76 Total: 3.42 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.73 Total: 2.74 kcal Atomic # 7 Polarization: -57.65 SS G_CDS: 0.44 Total: -57.21 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.27 Total: -16.63 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.19 -10.54 -45.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732385547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.959 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds