Wall clock time and date at job start Wed Apr 1 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99889 * 2 1 4 4 H 1.48500 * 109.46924 * 274.43167 * 3 2 1 5 5 H 1.48498 * 109.47254 * 34.43277 * 3 2 1 6 6 H 1.48499 * 109.46831 * 154.43391 * 3 2 1 7 7 C 1.38808 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00551 * 163.18230 * 7 2 1 9 9 N 1.36946 * 119.99804 * 343.18003 * 7 2 1 10 10 C 1.47152 * 120.98026 * 333.59900 * 9 7 2 11 11 C 1.53298 * 108.38100 * 230.55512 * 10 9 7 12 12 O 1.42963 * 109.22276 * 307.69971 * 11 10 9 13 13 C 1.42958 * 114.16602 * 62.58263 * 12 11 10 14 14 H 1.08998 * 109.51794 * 57.39324 * 13 12 11 15 15 C 1.52999 * 109.50984 * 177.49499 * 13 12 11 16 16 N 1.46503 * 109.47397 * 299.99901 * 15 13 12 17 17 C 1.34770 * 120.00172 * 180.02562 * 16 15 13 18 18 O 1.21281 * 120.00258 * 359.97438 * 17 16 15 19 19 C 1.50707 * 120.00023 * 179.97438 * 17 16 15 20 20 C 1.50692 * 109.47320 * 179.97438 * 19 17 16 21 21 N 1.30248 * 126.10667 * 269.69088 * 20 19 17 22 22 N 1.39868 * 110.08562 * 179.89845 * 21 20 19 23 23 H 0.97005 * 125.46481 * 180.13575 * 22 21 20 24 24 C 1.37039 * 109.07849 * 0.37420 * 22 21 20 25 25 C 1.39287 * 133.85267 * 179.78341 * 24 22 21 26 26 C 1.36597 * 119.85158 * 179.97438 * 25 24 22 27 27 C 1.38958 * 120.81585 * 0.02562 * 26 25 24 28 28 C 1.36469 * 120.62595 * 359.97438 * 27 26 25 29 29 C 1.39943 * 119.64099 * 0.02562 * 28 27 26 30 30 C 1.47152 * 120.97893 * 153.61827 * 9 7 2 31 31 H 0.97010 * 120.00023 * 359.97438 * 1 2 3 32 32 H 1.08991 * 109.68331 * 350.27862 * 10 9 7 33 33 H 1.08994 * 109.68077 * 110.80210 * 10 9 7 34 34 H 1.09005 * 109.51347 * 187.77295 * 11 10 9 35 35 H 1.09006 * 109.51340 * 67.62223 * 11 10 9 36 36 H 1.08996 * 109.47396 * 60.00099 * 15 13 12 37 37 H 1.09009 * 109.47106 * 179.97438 * 15 13 12 38 38 H 0.97007 * 119.99565 * 359.97438 * 16 15 13 39 39 H 1.08996 * 109.47254 * 300.00088 * 19 17 16 40 40 H 1.08999 * 109.46970 * 59.99616 * 19 17 16 41 41 H 1.07999 * 120.07588 * 0.02822 * 25 24 22 42 42 H 1.07996 * 119.58616 * 180.02562 * 26 25 24 43 43 H 1.07995 * 119.68728 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.17719 * 179.97438 * 28 27 26 45 45 H 1.08994 * 109.68576 * 9.72146 * 30 9 7 46 46 H 1.09001 * 109.68172 * 249.16317 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4040 2.1005 -1.3959 5 1 1.4976 2.6238 0.7916 6 1 3.5914 1.4149 0.6042 7 6 2.0102 -1.2021 -0.0005 8 1 3.0556 -1.2221 -0.2711 9 7 1.3694 -2.3629 0.3421 10 6 0.1979 -2.3469 1.2324 11 6 0.4259 -3.3714 2.3498 12 8 0.7652 -4.6331 1.7695 13 6 1.9807 -4.6232 1.0169 14 1 2.8008 -4.2922 1.6541 15 6 2.2726 -6.0330 0.4992 16 7 2.4082 -6.9512 1.6328 17 6 2.6691 -8.2555 1.4160 18 8 2.7912 -8.6693 0.2825 19 6 2.8091 -9.1999 2.5821 20 6 3.0966 -10.5885 2.0722 21 7 2.2107 -11.4975 1.7800 22 7 2.8457 -12.6615 1.3349 23 1 2.3979 -13.4760 1.0572 24 6 4.2023 -12.4689 1.3589 25 6 5.2963 -13.2678 1.0351 26 6 6.5627 -12.7738 1.1700 27 6 6.7768 -11.4796 1.6283 28 6 5.7243 -10.6740 1.9531 29 6 4.4173 -11.1571 1.8236 30 6 1.8323 -3.6629 -0.1688 31 1 -0.4851 0.8401 0.0004 32 1 0.0784 -1.3533 1.6641 33 1 -0.6959 -2.6117 0.6677 34 1 -0.4847 -3.4751 2.9400 35 1 1.2402 -3.0350 2.9916 36 1 1.4531 -6.3626 -0.1393 37 1 3.1993 -6.0246 -0.0749 38 1 2.3109 -6.6201 2.5394 39 1 3.6287 -8.8700 3.2205 40 1 1.8825 -9.2085 3.1559 41 1 5.1437 -14.2754 0.6773 42 1 7.4078 -13.3969 0.9173 43 1 7.7858 -11.1075 1.7276 44 1 5.8991 -9.6694 2.3091 45 1 2.7951 -3.5407 -0.6648 46 1 1.1031 -4.0608 -0.8744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732385547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:45 Heat of formation + Delta-G solvation = 3.959310 kcal Electronic energy + Delta-G solvation = -28940.857379 eV Core-core repulsion = 24831.379334 eV Total energy + Delta-G solvation = -4109.478045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28784 -40.78230 -39.90406 -38.06862 -36.50108 -35.72643 -34.40494 -33.36529 -32.44176 -31.29990 -30.70384 -29.67006 -28.90710 -26.88792 -24.95568 -23.96660 -23.49958 -23.11365 -22.12657 -21.46561 -20.58336 -18.91086 -18.81121 -18.13873 -17.85256 -17.52809 -17.11680 -16.78562 -16.28540 -16.10712 -16.05488 -15.81385 -15.48306 -15.39133 -15.02810 -14.96542 -14.77376 -14.58694 -14.28035 -14.12877 -13.88347 -13.20056 -13.07622 -12.97244 -12.82166 -12.78598 -12.68098 -12.48713 -12.18113 -12.05927 -11.97628 -11.86032 -11.72160 -11.36224 -11.28087 -10.86178 -10.78170 -10.52833 -10.08633 -9.63450 -8.93388 -8.74745 -7.90915 -5.38395 0.00398 0.58964 1.33661 1.47184 1.48481 1.58761 1.64915 1.73036 2.27057 2.49719 2.80569 2.90013 3.24390 3.37538 3.50543 3.57704 3.77960 3.89772 4.02295 4.09812 4.17486 4.27901 4.35022 4.47546 4.49206 4.51034 4.51885 4.55720 4.65791 4.67984 4.73632 4.81116 4.92180 4.98107 5.08147 5.09736 5.25711 5.38861 5.42025 5.53421 5.56481 5.62200 5.63606 5.98207 6.26883 6.34562 6.38584 6.58151 6.59736 7.06569 7.26765 7.74770 8.28302 9.15123 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024353 B = 0.001880 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.496483 B =14889.976551 C =15560.434067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.265 4.265 8 H 0.074 0.926 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.075 0.925 15 C 0.142 3.858 16 N -0.706 5.706 17 C 0.518 3.482 18 O -0.584 6.584 19 C -0.057 4.057 20 C 0.112 3.888 21 N -0.273 5.273 22 N -0.509 5.509 23 H 0.448 0.552 24 C 0.108 3.892 25 C -0.152 4.152 26 C -0.069 4.069 27 C -0.162 4.162 28 C -0.052 4.052 29 C -0.192 4.192 30 C 0.115 3.885 31 H 0.251 0.749 32 H 0.067 0.933 33 H -0.004 1.004 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.419 0.581 39 H 0.156 0.844 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.142 0.858 45 H 0.072 0.928 46 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.762 -24.999 9.959 29.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.190 1.190 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.022 4.022 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.093 0.907 15 C 0.017 3.983 16 N -0.359 5.359 17 C 0.305 3.695 18 O -0.463 6.463 19 C -0.098 4.098 20 C -0.066 4.066 21 N -0.088 5.088 22 N -0.226 5.226 23 H 0.295 0.705 24 C -0.007 4.007 25 C -0.174 4.174 26 C -0.089 4.089 27 C -0.181 4.181 28 C -0.072 4.072 29 C -0.200 4.200 30 C -0.012 4.012 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.014 0.986 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.256 0.744 39 H 0.173 0.827 40 H 0.154 0.846 41 H 0.165 0.835 42 H 0.177 0.823 43 H 0.169 0.831 44 H 0.160 0.840 45 H 0.091 0.909 46 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 11.358 -25.605 9.114 29.456 hybrid contribution 0.193 1.258 -0.439 1.347 sum 11.551 -24.347 8.675 28.310 Atomic orbital electron populations 1.70201 1.06775 1.26037 1.55257 1.25857 0.96111 1.01717 1.01094 0.85198 0.78279 0.79230 0.77335 1.21521 1.21770 1.18998 1.19561 0.93013 0.85478 1.41412 0.90865 1.44355 1.33741 1.01907 1.53701 1.21328 0.87849 0.98515 0.90723 1.23151 1.00876 0.83529 0.94686 1.87797 1.41920 1.32049 1.69014 1.22637 0.87572 0.94002 0.93644 0.90711 1.21156 1.01690 0.86382 0.89049 1.45705 1.71765 1.07479 1.10943 1.20775 0.75514 0.82719 0.90542 1.90731 1.51966 1.77526 1.26125 1.20169 1.08424 0.85131 0.96110 1.23054 0.89668 0.95481 0.98441 1.76414 1.22586 0.93886 1.15884 1.45838 1.02592 1.13896 1.60227 0.70536 1.19260 0.85963 0.96120 0.99385 1.20191 0.90063 1.00673 1.06451 1.21169 0.96601 0.95866 0.95289 1.21070 0.99821 0.94675 1.02579 1.20671 0.89568 1.00407 0.96599 1.20032 0.94517 0.94736 1.10675 1.21621 0.98664 0.86411 0.94467 0.93972 0.91438 0.98605 0.87332 0.92712 0.92729 0.89427 0.74399 0.82657 0.84600 0.83546 0.82281 0.83074 0.84033 0.90943 0.96886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.81 11.15 21.65 0.24 -54.56 16 2 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 3 Si 0.97 43.77 29.59 68.60 2.03 45.80 16 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 7 C -0.26 -14.24 9.65 84.03 0.81 -13.42 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 9 N -0.61 -30.35 3.05 -697.56 -2.13 -32.48 16 10 C 0.14 6.72 5.44 86.35 0.47 7.19 16 11 C 0.06 1.95 6.98 72.08 0.50 2.46 16 12 O -0.39 -13.22 10.13 -148.98 -1.51 -14.73 16 13 C 0.08 2.58 2.87 30.69 0.09 2.67 16 14 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 3.99 5.37 86.38 0.46 4.45 16 16 N -0.71 -15.84 5.45 -463.05 -2.52 -18.36 16 17 C 0.52 12.83 7.82 87.66 0.69 13.51 16 18 O -0.58 -20.44 16.03 -3.03 -0.05 -20.49 16 19 C -0.06 -0.97 6.30 29.10 0.18 -0.79 16 20 C 0.11 2.64 5.92 44.78 0.27 2.90 16 21 N -0.27 -7.16 12.55 -43.70 -0.55 -7.70 16 22 N -0.51 -10.98 7.37 -51.53 -0.38 -11.35 16 23 H 0.45 6.79 8.96 -213.46 -1.91 4.88 16 24 C 0.11 2.29 7.34 39.21 0.29 2.58 16 25 C -0.15 -2.29 10.03 22.14 0.22 -2.06 16 26 C -0.07 -0.84 9.96 22.06 0.22 -0.62 16 27 C -0.16 -2.18 9.97 22.03 0.22 -1.96 16 28 C -0.05 -0.90 10.07 22.27 0.22 -0.68 16 29 C -0.19 -4.30 6.33 -20.25 -0.13 -4.42 16 30 C 0.11 4.68 6.02 86.35 0.52 5.20 16 31 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 32 H 0.07 3.55 6.15 -2.39 -0.01 3.53 16 33 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.11 3.27 8.14 -2.38 -0.02 3.25 16 35 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.42 7.09 8.35 -92.70 -0.77 6.32 16 39 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 42 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 43 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 44 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.07 2.78 7.96 -2.39 -0.02 2.77 16 46 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -78.82 384.77 -1.07 -79.89 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -1.66 Total: 19.44 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 5.46 Total: 14.55 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -5.34 Total: -124.46 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.56 Total: -35.22 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -78.82 -1.07 -79.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732385547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.854 kcal (2) G-P(sol) polarization free energy of solvation -78.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds