Wall clock time and date at job start Wed Apr 1 2020 02:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86797 * 120.00199 * 2 1 4 4 H 1.48505 * 109.47109 * 274.98439 * 3 2 1 5 5 H 1.48503 * 109.46980 * 34.97940 * 3 2 1 6 6 H 1.48496 * 109.47373 * 154.98178 * 3 2 1 7 7 C 1.38817 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00064 * 186.83332 * 7 2 1 9 9 N 1.36939 * 119.99954 * 6.83731 * 7 2 1 10 10 C 1.47421 * 125.64858 * 173.89711 * 9 7 2 11 11 C 1.54903 * 104.83315 * 155.85141 * 10 9 7 12 12 C 1.55156 * 101.58351 * 37.00756 * 11 10 9 13 13 O 1.42904 * 110.86819 * 82.93293 * 12 11 10 14 14 C 1.52995 * 110.72286 * 206.13369 * 12 11 10 15 15 N 1.46506 * 109.47004 * 174.97843 * 14 12 11 16 16 C 1.34779 * 119.99714 * 180.02562 * 15 14 12 17 17 O 1.21273 * 120.00087 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99654 * 180.02562 * 16 15 14 19 19 C 1.50696 * 109.47139 * 179.97438 * 18 16 15 20 20 C 1.39686 * 119.13492 * 269.72502 * 19 18 16 21 21 C 1.35627 * 121.81893 * 179.72466 * 20 19 18 22 22 C 1.41152 * 119.59371 * 0.55860 * 21 20 19 23 23 N 1.32064 * 134.67932 * 179.73199 * 22 21 20 24 24 N 1.39954 * 108.95961 * 179.97438 * 23 22 21 25 25 H 0.97002 * 125.01788 * 179.97438 * 24 23 22 26 26 C 1.33985 * 109.95949 * 0.02562 * 24 23 22 27 27 C 1.38254 * 107.90575 * 359.97438 * 26 24 23 28 28 C 1.35647 * 119.14207 * 89.99168 * 19 18 16 29 29 C 1.47020 * 125.64921 * 353.87699 * 9 7 2 30 30 H 0.97001 * 120.00020 * 0.02562 * 1 2 3 31 31 H 1.09002 * 110.36874 * 274.69210 * 10 9 7 32 32 H 1.09003 * 110.36453 * 37.01470 * 10 9 7 33 33 H 1.09001 * 111.00516 * 155.08843 * 11 10 9 34 34 H 1.09003 * 111.00465 * 278.93407 * 11 10 9 35 35 H 0.96699 * 113.99785 * 184.93705 * 13 12 11 36 36 H 1.09004 * 109.47460 * 294.98022 * 14 12 11 37 37 H 1.08995 * 109.46875 * 54.97773 * 14 12 11 38 38 H 0.97002 * 119.99820 * 0.02562 * 15 14 12 39 39 H 1.09006 * 109.46558 * 299.99139 * 18 16 15 40 40 H 1.08995 * 109.47676 * 59.99438 * 18 16 15 41 41 H 1.08008 * 119.08745 * 0.02562 * 20 19 18 42 42 H 1.08003 * 120.20589 * 180.24428 * 21 20 19 43 43 H 1.08003 * 126.04951 * 179.97438 * 26 24 23 44 44 H 1.08006 * 120.23119 * 0.02562 * 28 19 18 45 45 H 1.09006 * 109.87818 * 300.49317 * 29 9 7 46 46 H 1.08994 * 109.88526 * 61.50338 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0844 -1.2055 0.1118 9 7 1.3328 -2.3840 -0.1401 10 6 1.9488 -3.7156 -0.2837 11 6 0.8667 -4.7083 0.2091 12 6 -0.4313 -4.0413 -0.3179 13 8 -0.6586 -4.3815 -1.6871 14 6 -1.6321 -4.4383 0.5430 15 7 -2.8175 -3.7021 0.0968 16 6 -4.0005 -3.8917 0.7142 17 8 -4.0837 -4.6721 1.6388 18 6 -5.2200 -3.1349 0.2549 19 6 -6.4028 -3.5258 1.1029 20 6 -7.2033 -4.5976 0.7008 21 6 -8.2774 -4.9991 1.4252 22 6 -8.6115 -4.3152 2.6139 23 7 -9.5628 -4.4407 3.5213 24 7 -9.3879 -3.4580 4.5023 25 1 -9.9578 -3.3383 5.2782 26 6 -8.3178 -2.7062 4.2110 27 6 -7.7713 -3.1828 3.0339 28 6 -6.6654 -2.8244 2.2338 29 6 -0.1293 -2.5349 -0.1726 30 1 -0.4850 0.8401 -0.0004 31 1 2.1943 -3.9095 -1.3278 32 1 2.8420 -3.7892 0.3369 33 1 1.0083 -5.6933 -0.2358 34 1 0.8599 -4.7704 1.2974 35 1 -1.4156 -3.9295 -2.0842 36 1 -1.8112 -5.5091 0.4452 37 1 -1.4265 -4.1981 1.5861 38 1 -2.7510 -3.0782 -0.6430 39 1 -5.0409 -2.0641 0.3520 40 1 -5.4257 -3.3758 -0.7881 41 1 -6.9575 -5.1240 -0.2097 42 1 -8.8763 -5.8338 1.0919 43 1 -7.9476 -1.8750 4.7928 44 1 -6.0330 -1.9967 2.5195 45 1 -0.5615 -2.1580 0.7544 46 1 -0.5396 -1.9885 -1.0217 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733488729.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:49 Heat of formation + Delta-G solvation = 36.337524 kcal Electronic energy + Delta-G solvation = -29380.335872 eV Core-core repulsion = 25272.261852 eV Total energy + Delta-G solvation = -4108.074021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.40521 -39.79145 -38.50507 -37.29329 -35.05482 -33.90356 -32.86111 -32.23834 -31.31204 -30.37531 -29.47567 -28.10729 -27.02296 -25.59690 -24.16909 -23.43014 -21.55803 -20.84704 -20.60277 -19.89003 -19.76337 -18.36829 -17.52073 -16.87865 -16.75249 -16.30691 -15.82146 -15.41604 -15.04233 -14.96241 -14.63067 -14.42585 -14.01801 -13.98264 -13.91959 -13.54002 -13.24794 -13.15168 -12.84177 -12.29303 -12.24649 -11.99943 -11.83065 -11.76284 -11.60371 -11.49112 -11.20724 -10.86689 -10.67077 -10.47284 -10.47259 -10.42774 -10.24161 -10.05745 -9.82244 -9.60184 -9.28887 -8.86155 -8.81064 -8.66995 -7.69139 -6.88464 -5.80022 -3.10554 0.48580 1.68155 2.29661 2.49309 2.86866 3.35567 3.36736 3.42507 3.43615 3.83062 4.09765 4.44304 4.45059 4.58535 4.70258 4.92525 4.95580 5.01542 5.14384 5.24363 5.33047 5.34674 5.45506 5.47650 5.49267 5.55273 5.62436 5.63671 5.92582 6.01288 6.03815 6.18255 6.30452 6.31443 6.34629 6.44465 6.59585 6.60796 6.67283 6.76305 6.84752 6.90083 7.28605 7.40325 7.41758 7.69167 7.70238 8.08452 8.17299 8.44740 9.14864 9.75706 10.42117 11.32914 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014211 B = 0.002367 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.863486 B =11828.517991 C =13121.852329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.604 5.604 10 C 0.136 3.864 11 C -0.115 4.115 12 C 0.086 3.914 13 O -0.551 6.551 14 C 0.111 3.889 15 N -0.723 5.723 16 C 0.514 3.486 17 O -0.538 6.538 18 C -0.100 4.100 19 C -0.097 4.097 20 C -0.053 4.053 21 C -0.111 4.111 22 C 0.107 3.893 23 N -0.314 5.314 24 N -0.430 5.430 25 H 0.442 0.558 26 C 0.082 3.918 27 C -0.202 4.202 28 C -0.028 4.028 29 C 0.163 3.837 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.368 0.632 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.402 0.598 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.188 0.812 44 H 0.125 0.875 45 H 0.052 0.948 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 -5.989 3.309 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.331 5.331 10 C 0.010 3.990 11 C -0.154 4.154 12 C 0.044 3.956 13 O -0.356 6.356 14 C -0.013 4.013 15 N -0.376 5.376 16 C 0.300 3.700 17 O -0.414 6.414 18 C -0.140 4.140 19 C -0.099 4.099 20 C -0.076 4.076 21 C -0.132 4.132 22 C -0.046 4.046 23 N -0.142 5.142 24 N -0.130 5.130 25 H 0.286 0.714 26 C -0.075 4.075 27 C -0.212 4.212 28 C -0.049 4.049 29 C 0.038 3.962 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.214 0.786 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.236 0.764 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.205 0.795 44 H 0.142 0.858 45 H 0.070 0.930 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.447 -7.405 4.473 19.474 hybrid contribution 0.459 2.201 -0.141 2.252 sum -16.988 -5.204 4.332 18.288 Atomic orbital electron populations 1.69917 1.04892 1.24999 1.57321 1.24792 0.95782 0.97652 1.02245 0.86096 0.78719 0.83478 0.77485 1.21635 1.21806 1.20654 1.19102 0.91200 0.82478 1.42557 0.90300 1.44380 1.01158 1.01468 1.86060 1.21560 0.94348 0.85513 0.97589 1.22703 0.93756 0.98692 1.00226 1.22907 0.93101 0.98615 0.80953 1.86509 1.53400 1.70607 1.25080 1.21911 0.84124 0.96059 0.99243 1.45944 1.08812 1.45584 1.37229 1.20533 0.84162 0.82657 0.82658 1.90708 1.85402 1.36658 1.28676 1.20666 0.90987 1.01828 1.00526 1.18639 0.96774 0.97644 0.96828 1.20522 0.93117 0.94991 0.98938 1.19777 0.99498 1.01073 0.92878 1.20966 0.92900 0.95519 0.95249 1.77643 1.23907 1.11240 1.01432 1.46282 1.22140 1.23195 1.21357 0.71405 1.22717 0.89978 0.97604 0.97189 1.19585 1.01724 1.01510 0.98362 1.20074 0.93849 0.98630 0.92302 1.21786 0.85764 0.87267 1.01415 0.93823 0.95685 0.94119 0.90948 0.90267 0.78553 0.91430 0.90712 0.76366 0.87695 0.88008 0.85673 0.85480 0.79488 0.85751 0.92985 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.54 10.36 55.49 0.57 -24.97 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 21.54 29.56 -169.99 -5.02 16.52 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.23 -6.13 10.26 -15.06 -0.15 -6.29 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.60 -15.00 3.39 -170.08 -0.58 -15.58 16 10 C 0.14 2.81 7.23 -2.53 -0.02 2.79 16 11 C -0.11 -2.00 6.26 -24.59 -0.15 -2.15 16 12 C 0.09 1.50 0.92 -88.79 -0.08 1.42 16 13 O -0.55 -9.21 13.10 -35.23 -0.46 -9.67 16 14 C 0.11 1.76 4.73 -4.04 -0.02 1.74 16 15 N -0.72 -10.02 5.17 -60.29 -0.31 -10.34 16 16 C 0.51 7.30 7.82 -10.98 -0.09 7.21 16 17 O -0.54 -9.73 16.03 5.56 0.09 -9.64 16 18 C -0.10 -1.05 5.78 -29.04 -0.17 -1.21 16 19 C -0.10 -1.14 4.33 -105.01 -0.45 -1.60 16 20 C -0.05 -0.60 9.51 -39.97 -0.38 -0.98 16 21 C -0.11 -1.32 10.08 -39.41 -0.40 -1.72 16 22 C 0.11 1.40 7.49 -83.05 -0.62 0.78 16 23 N -0.31 -3.93 12.70 33.26 0.42 -3.50 16 24 N -0.43 -3.63 7.18 30.84 0.22 -3.41 16 25 H 0.44 1.92 8.96 -182.71 -1.64 0.28 16 26 C 0.08 0.69 12.08 -16.61 -0.20 0.49 16 27 C -0.20 -2.39 6.33 -105.19 -0.67 -3.06 16 28 C -0.03 -0.33 9.66 -39.41 -0.38 -0.71 16 29 C 0.16 3.62 4.16 -3.07 -0.01 3.61 16 30 H 0.25 6.77 8.31 -40.82 -0.34 6.44 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.31 8.04 -51.93 -0.42 0.89 16 35 H 0.37 4.88 8.12 45.56 0.37 5.25 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 38 H 0.40 4.94 7.38 -40.82 -0.30 4.64 16 39 H 0.10 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.10 0.79 8.07 -51.93 -0.42 0.37 16 41 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 43 H 0.19 0.78 8.06 -52.48 -0.42 0.35 16 44 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.05 1.29 7.23 -51.93 -0.38 0.92 16 46 H 0.05 1.20 7.28 -51.93 -0.38 0.82 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -36.50 383.17 -10.11 -46.61 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.93 Total: 8.21 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -3.89 Total: -0.01 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.33 Total: -57.79 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.37 Total: -19.31 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.50 -10.11 -46.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733488729.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.947 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds