Wall clock time and date at job start Wed Apr 1 2020 02:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48496 * 109.47145 * 269.99622 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99788 * 3 2 1 6 6 H 1.48500 * 109.47136 * 149.99529 * 3 2 1 7 7 C 1.38815 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.55438 * 305.12482 * 11 10 9 13 13 C 1.53300 * 109.51386 * 184.99969 * 11 10 9 14 14 N 1.47148 * 108.41473 * 187.79338 * 13 11 10 15 15 C 1.34784 * 120.98330 * 230.49467 * 14 13 11 16 16 O 1.21283 * 119.99557 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00133 * 180.02562 * 15 14 13 18 18 C 1.50701 * 109.47061 * 179.97438 * 17 15 14 19 19 C 1.39688 * 119.09264 * 89.99944 * 18 17 15 20 20 C 1.35644 * 121.72827 * 180.02562 * 19 18 17 21 21 C 1.41131 * 119.53456 * 359.97438 * 20 19 18 22 22 C 1.38255 * 134.81558 * 180.02562 * 21 20 19 23 23 N 1.33985 * 107.90600 * 179.97438 * 22 21 20 24 24 H 0.97002 * 125.01914 * 179.97438 * 23 22 21 25 25 N 1.39956 * 109.95641 * 0.02562 * 23 22 21 26 26 C 1.32061 * 108.96150 * 359.97438 * 25 23 22 27 27 C 1.35637 * 119.09301 * 269.73425 * 18 17 15 28 28 C 1.47148 * 118.03926 * 50.51693 * 14 13 11 29 29 C 1.53300 * 108.38206 * 309.46540 * 28 14 13 30 30 O 1.42955 * 109.22459 * 52.30018 * 29 28 14 31 31 H 0.96997 * 120.00386 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99884 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47090 * 59.99527 * 10 9 7 34 34 H 1.08999 * 109.47026 * 300.00089 * 10 9 7 35 35 H 1.09002 * 109.68260 * 68.04945 * 13 11 10 36 36 H 1.08999 * 109.68056 * 307.53378 * 13 11 10 37 37 H 1.09000 * 109.47397 * 299.99733 * 17 15 14 38 38 H 1.09004 * 109.47328 * 59.99995 * 17 15 14 39 39 H 1.08004 * 119.13411 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.23624 * 179.97438 * 20 19 18 41 41 H 1.07996 * 126.04539 * 359.96293 * 22 21 20 42 42 H 1.07997 * 120.20013 * 359.97178 * 27 18 17 43 43 H 1.09002 * 109.68553 * 69.18322 * 28 14 13 44 44 H 1.09000 * 109.68444 * 189.70208 * 28 14 13 45 45 H 1.09005 * 109.51071 * 172.22485 * 29 28 14 46 46 H 1.08997 * 109.51211 * 292.32088 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 1 0.3781 -4.7128 0.8416 13 6 1.8256 -6.1442 0.1271 14 7 0.8719 -7.2485 -0.0630 15 6 0.8028 -8.2653 0.8192 16 8 1.5339 -8.2791 1.7868 17 6 -0.1818 -9.3852 0.6026 18 6 -0.0576 -10.3868 1.7217 19 6 -0.8399 -10.2252 2.8677 20 6 -0.7707 -11.0942 3.9070 21 6 0.1117 -12.1934 3.8371 22 6 0.4307 -13.2419 4.6799 23 7 1.3568 -13.9938 4.0697 24 1 1.7570 -14.7951 4.4421 25 7 1.6621 -13.4516 2.8161 26 6 0.9359 -12.3643 2.6304 27 6 0.8068 -11.4232 1.5863 28 6 -0.0039 -7.2104 -1.2448 29 6 -0.6771 -5.8344 -1.3035 30 8 0.3238 -4.8169 -1.2220 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.6850 -3.7144 0.8905 34 1 2.6849 -3.7144 -0.8894 35 1 2.2773 -6.2153 1.1166 36 1 2.6026 -6.1948 -0.6356 37 1 -1.1940 -8.9812 0.5868 38 1 0.0287 -9.8753 -0.3481 39 1 -1.5176 -9.3865 2.9277 40 1 -1.3864 -10.9459 4.7817 41 1 0.0084 -13.4228 5.6573 42 1 1.3956 -11.5256 0.6868 43 1 0.5885 -7.3680 -2.1461 44 1 -0.7634 -7.9881 -1.1642 45 1 -1.2214 -5.7352 -2.2427 46 1 -1.3701 -5.7322 -0.4685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733751177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:58 Heat of formation + Delta-G solvation = 38.352166 kcal Electronic energy + Delta-G solvation = -28979.300139 eV Core-core repulsion = 24871.313479 eV Total energy + Delta-G solvation = -4107.986659 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54646 -40.40106 -38.59933 -37.38243 -35.02226 -34.35429 -32.86110 -32.34684 -32.01650 -30.19766 -29.16211 -28.75564 -27.65995 -25.49106 -23.79252 -23.47195 -22.48784 -21.63270 -21.00946 -20.78066 -19.18912 -18.37556 -17.45805 -17.11561 -16.92574 -16.50470 -16.02620 -15.74756 -15.43351 -15.17740 -14.99308 -14.79246 -14.42028 -14.33572 -14.18662 -13.72888 -13.37648 -13.20698 -13.11164 -12.68881 -12.47644 -12.27504 -12.24790 -11.96829 -11.94113 -11.72013 -11.55003 -10.98091 -10.85995 -10.77913 -10.60313 -10.58319 -10.42933 -10.06216 -9.89055 -9.83447 -9.64800 -8.90311 -8.83915 -8.50545 -7.88792 -6.86288 -5.70247 -2.98767 0.33576 1.52541 2.16941 2.36692 2.54634 2.81649 3.48189 3.52853 3.54714 3.59793 3.94141 3.96841 4.25110 4.44508 4.53158 4.62025 4.74357 4.76289 4.85425 4.90971 4.96456 5.09761 5.16112 5.19743 5.22484 5.33951 5.35664 5.38896 5.51534 5.62679 5.69172 5.73261 5.88773 5.92527 5.99517 6.17040 6.24707 6.29889 6.35154 6.41696 6.59680 6.61375 6.72197 6.73089 7.26490 7.28868 7.49008 7.74805 8.08435 8.47900 9.59587 10.16801 10.52677 11.52595 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.001870 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.619490 B =14969.200266 C =15367.888171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.726 5.726 10 C 0.163 3.837 11 C 0.074 3.926 12 H 0.063 0.937 13 C 0.086 3.914 14 N -0.615 5.615 15 C 0.517 3.483 16 O -0.528 6.528 17 C -0.104 4.104 18 C -0.019 4.019 19 C -0.136 4.136 20 C -0.045 4.045 21 C -0.206 4.206 22 C 0.080 3.920 23 N -0.428 5.428 24 H 0.443 0.557 25 N -0.309 5.309 26 C 0.109 3.891 27 C -0.093 4.093 28 C 0.071 3.929 29 C 0.045 3.955 30 O -0.358 6.358 31 H 0.254 0.746 32 H 0.387 0.613 33 H 0.036 0.964 34 H 0.030 0.970 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.188 0.812 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -30.700 4.884 31.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.371 5.371 10 C 0.035 3.965 11 C 0.016 3.984 12 H 0.081 0.919 13 C -0.037 4.037 14 N -0.350 5.350 15 C 0.305 3.695 16 O -0.404 6.404 17 C -0.144 4.144 18 C -0.024 4.024 19 C -0.155 4.155 20 C -0.065 4.065 21 C -0.215 4.215 22 C -0.078 4.078 23 N -0.128 5.128 24 H 0.287 0.713 25 N -0.137 5.137 26 C -0.044 4.044 27 C -0.114 4.114 28 C -0.053 4.053 29 C -0.033 4.033 30 O -0.276 6.276 31 H 0.064 0.936 32 H 0.221 0.779 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.205 0.795 42 H 0.144 0.856 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.122 0.878 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.354 -31.257 4.740 31.792 hybrid contribution -0.341 0.823 0.705 1.136 sum -3.695 -30.435 5.445 31.138 Atomic orbital electron populations 1.69671 1.05101 1.25535 1.57782 1.24743 0.95534 0.97664 1.03098 0.86175 0.78619 0.83818 0.77484 1.21746 1.21825 1.20773 1.19234 0.91037 0.84095 1.42591 0.91129 1.42227 1.05999 0.99508 1.89346 1.20620 0.92440 0.84648 0.98820 1.22800 0.94183 0.94257 0.87207 0.91855 1.22326 0.91767 0.85381 1.04227 1.48182 1.38967 1.23063 1.24829 1.20464 0.84207 0.82563 0.82253 1.90743 1.43279 1.77314 1.29041 1.20787 1.00463 0.94224 0.98948 1.18761 0.95422 0.93555 0.94620 1.20385 1.01335 1.00142 0.93640 1.20164 0.96064 0.92125 0.98127 1.19663 1.05580 1.00209 0.96091 1.22695 0.93487 0.92695 0.98878 1.46308 1.30034 1.22852 1.13641 0.71329 1.77684 1.25179 1.13438 0.97424 1.20846 0.94560 0.93707 0.95299 1.19609 1.00360 0.93874 0.97522 1.22540 0.94444 0.99721 0.88558 1.22913 0.90922 0.86523 1.02935 1.88158 1.49663 1.51995 1.37806 0.93587 0.77926 0.94648 0.95267 0.88055 0.90514 0.87524 0.87697 0.85955 0.85703 0.79545 0.85601 0.90294 0.89017 0.87798 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.79 13.06 55.49 0.72 -28.06 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.11 5.55 -59.91 -0.33 -19.45 16 10 C 0.16 3.39 5.93 -4.05 -0.02 3.37 16 11 C 0.07 1.28 2.81 -26.58 -0.07 1.20 16 12 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 13 C 0.09 1.25 5.93 -3.53 -0.02 1.23 16 14 N -0.62 -7.59 3.02 -172.28 -0.52 -8.11 16 15 C 0.52 6.59 7.70 -10.99 -0.08 6.50 16 16 O -0.53 -8.93 15.50 5.56 0.09 -8.84 16 17 C -0.10 -0.90 4.15 -29.04 -0.12 -1.02 16 18 C -0.02 -0.20 4.33 -105.01 -0.45 -0.65 16 19 C -0.14 -1.34 9.51 -39.97 -0.38 -1.72 16 20 C -0.04 -0.41 10.09 -39.41 -0.40 -0.80 16 21 C -0.21 -2.05 6.33 -105.19 -0.67 -2.71 16 22 C 0.08 0.52 12.08 -16.61 -0.20 0.31 16 23 N -0.43 -3.05 7.18 30.84 0.22 -2.82 16 24 H 0.44 1.37 8.96 -182.71 -1.64 -0.27 16 25 N -0.31 -3.59 12.70 33.25 0.42 -3.17 16 26 C 0.11 1.32 7.49 -83.06 -0.62 0.70 16 27 C -0.09 -1.06 9.65 -39.41 -0.38 -1.44 16 28 C 0.07 0.66 6.54 -3.53 -0.02 0.63 16 29 C 0.05 0.53 6.99 37.31 0.26 0.79 16 30 O -0.36 -6.16 10.34 -35.23 -0.36 -6.52 16 31 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.39 10.78 7.67 -40.82 -0.31 10.47 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.57 7.08 -51.93 -0.37 1.21 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.11 0.67 7.59 -51.93 -0.39 0.28 16 38 H 0.10 0.66 7.93 -51.93 -0.41 0.25 16 39 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 40 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.19 0.34 8.06 -52.49 -0.42 -0.08 16 42 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.54 6.05 -51.93 -0.31 0.22 16 45 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 383.90 15.07 5.79 5.79 Total: -1.00 -39.13 383.90 -10.07 -49.20 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.63 Total: 5.32 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.44 Total: -1.14 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: 0.52 Total: -61.60 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.28 Total: -15.36 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.13 -10.07 -49.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733751177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.554 kcal (2) G-P(sol) polarization free energy of solvation -39.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds