Wall clock time and date at job start Wed Apr 1 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 119.99633 * 2 1 4 4 H 1.48496 * 109.47145 * 269.99622 * 3 2 1 5 5 H 1.48504 * 109.46966 * 29.99788 * 3 2 1 6 6 H 1.48500 * 109.47136 * 149.99529 * 3 2 1 7 7 C 1.38815 * 120.00576 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00217 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00091 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.55438 * 305.12482 * 11 10 9 13 13 C 1.53300 * 109.51386 * 184.99969 * 11 10 9 14 14 N 1.47148 * 108.41473 * 187.79338 * 13 11 10 15 15 C 1.34784 * 120.98330 * 230.49467 * 14 13 11 16 16 O 1.21283 * 119.99557 * 359.97438 * 15 14 13 17 17 C 1.50690 * 120.00133 * 180.02562 * 15 14 13 18 18 C 1.50701 * 109.47061 * 179.97438 * 17 15 14 19 19 C 1.39688 * 119.09264 * 89.99944 * 18 17 15 20 20 C 1.35644 * 121.72827 * 180.02562 * 19 18 17 21 21 C 1.41131 * 119.53456 * 359.97438 * 20 19 18 22 22 C 1.38255 * 134.81558 * 180.02562 * 21 20 19 23 23 N 1.33985 * 107.90600 * 179.97438 * 22 21 20 24 24 H 0.97002 * 125.01914 * 179.97438 * 23 22 21 25 25 N 1.39956 * 109.95641 * 0.02562 * 23 22 21 26 26 C 1.32061 * 108.96150 * 359.97438 * 25 23 22 27 27 C 1.35637 * 119.09301 * 269.73425 * 18 17 15 28 28 C 1.47148 * 118.03926 * 50.51693 * 14 13 11 29 29 C 1.53300 * 108.38206 * 309.46540 * 28 14 13 30 30 O 1.42955 * 109.22459 * 52.30018 * 29 28 14 31 31 H 0.96997 * 120.00386 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99884 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.47090 * 59.99527 * 10 9 7 34 34 H 1.08999 * 109.47026 * 300.00089 * 10 9 7 35 35 H 1.09002 * 109.68260 * 68.04945 * 13 11 10 36 36 H 1.08999 * 109.68056 * 307.53378 * 13 11 10 37 37 H 1.09000 * 109.47397 * 299.99733 * 17 15 14 38 38 H 1.09004 * 109.47328 * 59.99995 * 17 15 14 39 39 H 1.08004 * 119.13411 * 0.02562 * 19 18 17 40 40 H 1.07997 * 120.23624 * 179.97438 * 20 19 18 41 41 H 1.07996 * 126.04539 * 359.96293 * 22 21 20 42 42 H 1.07997 * 120.20013 * 359.97178 * 27 18 17 43 43 H 1.09002 * 109.68553 * 69.18322 * 28 14 13 44 44 H 1.09000 * 109.68444 * 189.70208 * 28 14 13 45 45 H 1.09005 * 109.51071 * 172.22485 * 29 28 14 46 46 H 1.08997 * 109.51211 * 292.32088 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4474 2.6528 0.7000 6 1 3.5476 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0641 -4.8196 0.0012 12 1 0.3781 -4.7128 0.8416 13 6 1.8256 -6.1442 0.1271 14 7 0.8719 -7.2485 -0.0630 15 6 0.8028 -8.2653 0.8192 16 8 1.5339 -8.2791 1.7868 17 6 -0.1818 -9.3852 0.6026 18 6 -0.0576 -10.3868 1.7217 19 6 -0.8399 -10.2252 2.8677 20 6 -0.7707 -11.0942 3.9070 21 6 0.1117 -12.1934 3.8371 22 6 0.4307 -13.2419 4.6799 23 7 1.3568 -13.9938 4.0697 24 1 1.7570 -14.7951 4.4421 25 7 1.6621 -13.4516 2.8161 26 6 0.9359 -12.3643 2.6304 27 6 0.8068 -11.4232 1.5863 28 6 -0.0039 -7.2104 -1.2448 29 6 -0.6771 -5.8344 -1.3035 30 8 0.3238 -4.8169 -1.2220 31 1 -0.4850 0.8400 -0.0004 32 1 0.3557 -2.3881 0.0005 33 1 2.6850 -3.7144 0.8905 34 1 2.6849 -3.7144 -0.8894 35 1 2.2773 -6.2153 1.1166 36 1 2.6026 -6.1948 -0.6356 37 1 -1.1940 -8.9812 0.5868 38 1 0.0287 -9.8753 -0.3481 39 1 -1.5176 -9.3865 2.9277 40 1 -1.3864 -10.9459 4.7817 41 1 0.0084 -13.4228 5.6573 42 1 1.3956 -11.5256 0.6868 43 1 0.5885 -7.3680 -2.1461 44 1 -0.7634 -7.9881 -1.1642 45 1 -1.2214 -5.7352 -2.2427 46 1 -1.3701 -5.7322 -0.4685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733751177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:57 Heat of formation + Delta-G solvation = 9.211856 kcal Electronic energy + Delta-G solvation = -28980.563757 eV Core-core repulsion = 24871.313479 eV Total energy + Delta-G solvation = -4109.250278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19329 -41.41736 -39.67924 -38.17616 -36.65071 -35.69897 -34.00749 -33.40733 -32.93271 -31.83550 -29.84620 -29.58932 -28.85166 -26.97275 -25.01777 -24.45348 -23.81731 -22.62064 -22.06383 -21.62688 -20.13118 -19.23116 -18.96642 -18.30840 -17.79661 -17.57642 -17.07441 -16.70581 -16.67489 -16.12281 -15.99337 -15.83903 -15.79316 -15.34121 -15.02906 -15.00779 -14.84611 -14.35484 -14.24609 -13.99170 -13.83866 -13.36821 -13.00857 -12.99379 -12.78023 -12.71961 -12.67560 -12.55100 -12.38512 -12.22347 -12.03589 -11.86006 -11.59638 -11.29027 -11.25000 -11.15462 -10.95331 -10.84680 -9.60364 -9.57367 -9.00537 -8.57289 -7.93518 -5.23107 -0.29818 0.82428 1.48057 1.49165 1.50808 1.58884 1.59585 1.85884 1.91031 2.57077 2.79292 2.87668 3.30494 3.40165 3.54396 3.63233 3.72743 3.90377 3.95545 4.03403 4.12086 4.14774 4.21850 4.33089 4.37332 4.39128 4.45987 4.53851 4.59386 4.61063 4.69475 4.70807 4.76539 4.80683 4.93120 4.97736 5.10545 5.23109 5.31740 5.47032 5.48973 5.57729 5.71584 5.97132 6.26341 6.29262 6.30205 6.34979 6.61737 7.11788 7.33997 8.07546 8.32796 9.30112 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022934 B = 0.001870 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.619490 B =14969.200266 C =15367.888171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.248 4.248 8 H 0.077 0.923 9 N -0.740 5.740 10 C 0.159 3.841 11 C 0.090 3.910 12 H 0.048 0.952 13 C 0.095 3.905 14 N -0.616 5.616 15 C 0.516 3.484 16 O -0.577 6.577 17 C -0.097 4.097 18 C -0.019 4.019 19 C -0.165 4.165 20 C -0.037 4.037 21 C -0.242 4.242 22 C 0.114 3.886 23 N -0.417 5.417 24 H 0.459 0.541 25 N -0.358 5.358 26 C 0.082 3.918 27 C -0.124 4.124 28 C 0.074 3.926 29 C 0.035 3.965 30 O -0.390 6.390 31 H 0.252 0.748 32 H 0.375 0.625 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.138 0.862 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.154 0.846 41 H 0.241 0.759 42 H 0.122 0.878 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.666 -32.293 5.384 33.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.380 4.380 8 H 0.095 0.905 9 N -0.382 5.382 10 C 0.032 3.968 11 C 0.032 3.968 12 H 0.066 0.934 13 C -0.029 4.029 14 N -0.350 5.350 15 C 0.306 3.694 16 O -0.457 6.457 17 C -0.136 4.136 18 C -0.024 4.024 19 C -0.185 4.185 20 C -0.057 4.057 21 C -0.252 4.252 22 C -0.045 4.045 23 N -0.119 5.119 24 H 0.306 0.694 25 N -0.188 5.188 26 C -0.070 4.070 27 C -0.146 4.146 28 C -0.048 4.048 29 C -0.042 4.042 30 O -0.309 6.309 31 H 0.060 0.940 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.172 0.828 41 H 0.257 0.743 42 H 0.140 0.860 43 H 0.109 0.891 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.147 -32.909 5.206 33.575 hybrid contribution -0.111 1.184 0.632 1.346 sum -4.257 -31.725 5.837 32.537 Atomic orbital electron populations 1.69834 1.06661 1.26092 1.59330 1.25623 0.96483 1.01225 1.03556 0.85082 0.77654 0.79170 0.77475 1.21298 1.22034 1.19399 1.19667 0.91583 0.85265 1.41489 0.90490 1.42408 1.05655 1.00817 1.89358 1.20759 0.93201 0.84078 0.98736 1.22412 0.93350 0.94038 0.87050 0.93425 1.22014 0.92087 0.85094 1.03668 1.48276 1.38783 1.22147 1.25747 1.21179 0.84043 0.83007 0.81192 1.90722 1.45381 1.78432 1.31119 1.20873 1.00613 0.92423 0.99669 1.18989 0.94806 0.93250 0.95342 1.20652 1.02432 1.01274 0.94116 1.20550 0.95311 0.91159 0.98641 1.20110 1.06605 1.02036 0.96436 1.23517 0.91119 0.90303 0.99573 1.46372 1.29742 1.23203 1.12549 0.69354 1.77588 1.26915 1.14398 0.99884 1.21165 0.95323 0.94049 0.96476 1.19754 1.01679 0.95132 0.98007 1.22753 0.94998 0.99349 0.87669 1.23266 0.90074 0.86627 1.04208 1.88091 1.50974 1.54533 1.37269 0.93972 0.79306 0.94151 0.95232 0.89493 0.89841 0.84436 0.84895 0.84743 0.82846 0.74321 0.85969 0.89073 0.84654 0.85428 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.86 13.06 21.65 0.28 -60.58 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.74 -39.79 5.55 -343.47 -1.91 -41.70 16 10 C 0.16 6.77 5.93 86.38 0.51 7.28 16 11 C 0.09 3.16 2.81 30.69 0.09 3.24 16 12 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 13 C 0.10 2.78 5.93 86.36 0.51 3.29 16 14 N -0.62 -14.37 3.02 -817.35 -2.47 -16.84 16 15 C 0.52 12.65 7.70 87.65 0.68 13.33 16 16 O -0.58 -19.87 15.50 -3.04 -0.05 -19.92 16 17 C -0.10 -1.47 4.15 29.10 0.12 -1.34 16 18 C -0.02 -0.39 4.33 -20.12 -0.09 -0.48 16 19 C -0.17 -3.11 9.51 22.02 0.21 -2.90 16 20 C -0.04 -0.61 10.09 22.38 0.23 -0.38 16 21 C -0.24 -4.50 6.33 -20.23 -0.13 -4.62 16 22 C 0.11 1.15 12.08 84.37 1.02 2.17 16 23 N -0.42 -5.28 7.18 -56.34 -0.40 -5.69 16 24 H 0.46 1.97 8.96 -213.41 -1.91 0.06 16 25 N -0.36 -8.42 12.70 -48.70 -0.62 -9.04 16 26 C 0.08 2.02 7.49 42.16 0.32 2.34 16 27 C -0.12 -2.94 9.65 22.38 0.22 -2.73 16 28 C 0.07 1.16 6.54 86.36 0.56 1.73 16 29 C 0.04 0.76 6.99 72.08 0.50 1.27 16 30 O -0.39 -13.30 10.34 -148.98 -1.54 -14.84 16 31 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.38 21.58 7.67 -92.71 -0.71 20.87 16 33 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 2.79 7.08 -2.39 -0.02 2.77 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.14 1.23 7.59 -2.39 -0.02 1.21 16 38 H 0.13 1.27 7.93 -2.38 -0.02 1.25 16 39 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 41 H 0.24 -0.36 8.06 -2.91 -0.02 -0.38 16 42 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.14 0.96 6.05 -2.39 -0.01 0.95 16 45 H 0.13 2.15 8.14 -2.38 -0.02 2.13 16 46 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -89.38 383.90 -0.22 -89.60 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -1.59 Total: 25.22 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 6.05 Total: 4.53 kcal Atomic # 7 Polarization: -128.73 SS G_CDS: -5.12 Total: -133.84 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.59 Total: -34.76 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -89.38 -0.22 -89.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733751177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.814 kcal (2) G-P(sol) polarization free energy of solvation -89.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds