Wall clock time and date at job start Wed Apr 1 2020 03:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00010 * 2 1 4 4 H 1.48502 * 109.46859 * 270.00057 * 3 2 1 5 5 H 1.48496 * 109.47370 * 29.99843 * 3 2 1 6 6 H 1.48499 * 109.47359 * 150.00358 * 3 2 1 7 7 C 1.38810 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99902 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00224 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00274 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47272 * 324.99587 * 10 9 7 12 12 C 1.52999 * 109.47254 * 204.99898 * 10 9 7 13 13 N 1.46503 * 109.47009 * 54.99769 * 12 10 9 14 14 C 1.34779 * 119.99838 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00092 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99929 * 179.97438 * 14 13 12 17 17 S 1.81397 * 109.47254 * 180.02562 * 16 14 13 18 18 O 1.42099 * 108.57771 * 65.51617 * 17 16 14 19 19 O 1.42103 * 108.57985 * 294.49005 * 17 16 14 20 20 C 1.81398 * 101.92179 * 180.02562 * 17 16 14 21 21 C 1.54961 * 110.92525 * 66.54120 * 20 17 16 22 22 C 1.54270 * 104.16191 * 156.29525 * 21 20 17 23 23 C 1.53869 * 106.63967 * 336.44607 * 22 21 20 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 C 1.52998 * 109.47214 * 84.99620 * 10 9 7 26 26 C 1.52997 * 117.49622 * 8.75168 * 25 10 9 27 27 C 1.52993 * 117.49973 * 300.09059 * 25 10 9 28 28 H 0.97005 * 119.99520 * 359.97438 * 1 2 3 29 29 H 0.97008 * 119.99423 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47227 * 295.00131 * 12 10 9 31 31 H 1.08997 * 109.47323 * 174.99810 * 12 10 9 32 32 H 0.97002 * 119.99957 * 0.02562 * 13 12 10 33 33 H 1.09007 * 109.47029 * 59.99865 * 16 14 13 34 34 H 1.09003 * 109.47397 * 300.00657 * 16 14 13 35 35 H 1.09001 * 110.67506 * 303.23275 * 20 17 16 36 36 H 1.08997 * 110.47708 * 37.64123 * 21 20 17 37 37 H 1.09002 * 110.53308 * 274.97515 * 21 20 17 38 38 H 1.09002 * 110.03399 * 217.13605 * 22 21 20 39 39 H 1.08995 * 110.02943 * 95.75505 * 22 21 20 40 40 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 41 41 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 42 42 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 43 43 H 1.09000 * 110.48806 * 264.79985 * 24 23 22 44 44 H 1.08998 * 115.54878 * 154.41226 * 25 10 9 45 45 H 1.08994 * 117.50385 * 359.97438 * 26 25 10 46 46 H 1.09010 * 117.49981 * 145.02235 * 26 25 10 47 47 H 1.09001 * 117.50053 * 214.97504 * 27 25 10 48 48 H 1.08996 * 117.50335 * 359.97425 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5650 -3.2063 0.5888 12 6 5.4995 -2.2588 0.6079 13 7 5.3625 -1.6633 1.9395 14 6 6.4607 -1.3860 2.6699 15 8 7.5624 -1.6289 2.2247 16 6 6.3199 -0.7729 4.0393 17 16 7.9648 -0.5216 4.7614 18 8 8.6565 0.4475 3.9857 19 8 8.5629 -1.7922 4.9786 20 6 7.5595 0.2085 6.3718 21 6 6.8241 -0.8145 7.2740 22 6 7.0941 -0.3153 8.7085 23 6 8.3798 0.5278 8.6469 24 6 8.8476 0.5115 7.1770 25 6 4.2576 -2.9758 -1.4380 26 6 3.8366 -2.0305 -2.5649 27 6 2.9738 -3.2482 -2.2244 28 1 -0.4850 0.8401 0.0004 29 1 3.8646 -0.3621 -0.0014 30 1 6.0785 -1.5915 -0.0306 31 1 6.0109 -3.2178 0.6897 32 1 4.4814 -1.4693 2.2957 33 1 5.7402 -1.4396 4.6779 34 1 5.8090 0.1865 3.9571 35 1 6.9616 1.1111 6.2456 36 1 7.2376 -1.8132 7.1335 37 1 5.7546 -0.8104 7.0636 38 1 7.2354 -1.1633 9.3786 39 1 6.2616 0.2979 9.0532 40 1 8.1711 1.5505 8.9610 41 1 9.1449 0.0895 9.2878 42 1 9.2540 1.4829 6.8952 43 1 9.5900 -0.2712 7.0215 44 1 5.1092 -3.6306 -1.6222 45 1 3.4557 -1.0490 -2.2827 46 1 4.4110 -2.0638 -3.4908 47 1 2.9810 -4.0820 -2.9264 48 1 2.0256 -3.0681 -1.7181 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752472537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:45 Heat of formation + Delta-G solvation = -99.056573 kcal Electronic energy + Delta-G solvation = -28676.196878 eV Core-core repulsion = 24665.402929 eV Total energy + Delta-G solvation = -4010.793949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01635 -39.31172 -38.91793 -38.04933 -37.08811 -36.10459 -35.16244 -33.18601 -31.95657 -30.19560 -29.89265 -29.43565 -25.35961 -24.23135 -23.06159 -22.54446 -21.82223 -21.26895 -20.78730 -19.87062 -19.63778 -18.66062 -18.08331 -17.54197 -17.29534 -16.95991 -16.59751 -16.48490 -16.37703 -16.12334 -15.61134 -15.14390 -15.02718 -14.59037 -14.54991 -14.48218 -14.42268 -13.99521 -13.75882 -13.19410 -13.13962 -13.09255 -12.97437 -12.69658 -12.58303 -12.53422 -12.22415 -12.17737 -12.13351 -12.09911 -12.05195 -11.94842 -11.63939 -11.51632 -11.28640 -11.27483 -11.09847 -10.89548 -10.67457 -10.23802 -9.34133 -7.96922 -5.30492 -1.16828 1.30373 1.37086 1.42285 1.47479 1.70081 1.91093 2.49936 2.72318 2.91381 3.06138 3.29784 3.35451 3.43995 3.47953 3.61517 3.83418 3.84749 3.93260 4.20699 4.23815 4.28952 4.33136 4.33821 4.40013 4.43248 4.47982 4.50748 4.61470 4.74323 4.78922 4.83055 4.96018 5.01365 5.05831 5.12468 5.15167 5.20664 5.25280 5.32026 5.44667 5.48574 5.59654 5.87366 6.25076 6.28441 6.94311 7.10934 7.84352 8.03501 9.23997 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014067 B = 0.002869 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.007084 B = 9755.942000 C =10819.444313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.053 4.053 3 Si 0.935 3.065 4 H -0.293 1.293 5 H -0.301 1.301 6 H -0.249 1.249 7 C -0.206 4.206 8 H 0.067 0.933 9 N -0.741 5.741 10 C 0.198 3.802 11 H 0.068 0.932 12 C 0.116 3.884 13 N -0.699 5.699 14 C 0.527 3.473 15 O -0.585 6.585 16 C -0.653 4.653 17 S 2.436 3.564 18 O -0.976 6.976 19 O -0.965 6.965 20 C -0.557 4.557 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.120 4.120 25 C -0.166 4.166 26 C -0.173 4.173 27 C -0.174 4.174 28 H 0.254 0.746 29 H 0.364 0.636 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.419 0.581 33 H 0.203 0.797 34 H 0.195 0.805 35 H 0.177 0.823 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.121 0.879 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.501 -0.849 17.268 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.245 4.245 3 Si 0.765 3.235 4 H -0.220 1.220 5 H -0.228 1.228 6 H -0.174 1.174 7 C -0.337 4.337 8 H 0.085 0.915 9 N -0.384 5.384 10 C 0.089 3.911 11 H 0.086 0.914 12 C -0.008 4.008 13 N -0.350 5.350 14 C 0.313 3.687 15 O -0.466 6.466 16 C -0.782 4.782 17 S 2.621 3.379 18 O -0.973 6.973 19 O -0.962 6.962 20 C -0.670 4.670 21 C -0.160 4.160 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.158 4.158 25 C -0.187 4.187 26 C -0.210 4.210 27 C -0.211 4.211 28 H 0.064 0.936 29 H 0.198 0.802 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.257 0.743 33 H 0.221 0.779 34 H 0.213 0.787 35 H 0.194 0.806 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.139 0.861 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.118 0.882 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.867 -1.327 16.528 22.270 hybrid contribution -1.119 1.499 -0.200 1.881 sum 13.748 0.172 16.328 21.346 Atomic orbital electron populations 1.69848 1.06944 1.26207 1.60149 1.25244 0.95651 1.00201 1.03377 0.85718 0.78916 0.81300 0.77583 1.21976 1.22785 1.17395 1.18874 0.81835 0.93156 1.39852 0.91549 1.42807 1.02695 1.03262 1.89680 1.20101 0.89932 0.87942 0.93095 0.91395 1.21687 0.97422 0.99220 0.82477 1.45866 1.09432 1.61990 1.17755 1.19795 0.84529 0.78062 0.86343 1.90827 1.26817 1.55687 1.73315 1.30832 1.28491 1.14615 1.04240 1.07520 0.77191 0.75031 0.78122 1.93509 1.70627 1.63025 1.70165 1.93503 1.73936 1.42684 1.86037 1.31206 1.08222 1.12474 1.15100 1.22558 1.02036 0.96622 0.94774 1.22136 0.98061 1.00237 0.95440 1.22145 0.97944 1.01678 0.93872 1.22374 0.93553 1.03370 0.96549 1.23015 0.98750 1.03237 0.93678 1.22807 1.03857 0.95641 0.98704 1.22825 0.95178 0.99622 1.03481 0.93644 0.80219 0.91835 0.89350 0.74279 0.77945 0.78731 0.80563 0.90026 0.86763 0.90500 0.89768 0.89993 0.90588 0.89027 0.91321 0.86109 0.90400 0.88590 0.88174 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -58.44 13.97 21.65 0.30 -58.13 16 2 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 3 Si 0.94 42.07 27.73 68.60 1.90 43.98 16 4 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.25 -9.88 6.52 99.48 0.65 -9.23 16 7 C -0.21 -10.10 8.64 84.03 0.73 -9.38 16 8 H 0.07 3.61 7.14 -2.91 -0.02 3.59 16 9 N -0.74 -29.09 2.88 -322.96 -0.93 -30.02 16 10 C 0.20 6.34 2.86 44.99 0.13 6.47 16 11 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 12 C 0.12 3.37 5.22 86.38 0.45 3.82 16 13 N -0.70 -19.24 5.39 -463.05 -2.49 -21.73 16 14 C 0.53 15.30 7.85 87.66 0.69 15.99 16 15 O -0.58 -22.21 15.62 -0.17 0.00 -22.22 16 16 C -0.65 -11.54 6.13 71.24 0.44 -11.10 16 17 S 2.44 55.72 3.57 -56.49 -0.20 55.52 16 18 O -0.98 -31.42 17.95 -125.74 -2.26 -33.68 16 19 O -0.96 -29.25 17.30 -125.76 -2.18 -31.42 16 20 C -0.56 -6.63 3.29 31.91 0.11 -6.52 16 21 C -0.12 -1.08 6.05 31.70 0.19 -0.89 16 22 C -0.12 -0.92 6.80 31.32 0.21 -0.71 16 23 C -0.12 -1.05 6.80 31.32 0.21 -0.84 16 24 C -0.12 -1.58 6.28 31.67 0.20 -1.38 16 25 C -0.17 -5.03 5.70 -10.80 -0.06 -5.09 16 26 C -0.17 -5.84 9.74 30.62 0.30 -5.54 16 27 C -0.17 -5.83 9.87 30.62 0.30 -5.53 16 28 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 29 H 0.36 14.39 5.66 -92.70 -0.52 13.87 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.42 10.58 8.14 -92.71 -0.75 9.82 16 33 H 0.20 1.73 8.07 -2.39 -0.02 1.71 16 34 H 0.20 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.18 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.89 7.50 -2.39 -0.02 0.88 16 37 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.07 1.06 8.05 -2.39 -0.02 1.04 16 44 H 0.12 3.01 8.11 -2.39 -0.02 3.00 16 45 H 0.08 3.16 6.68 -2.39 -0.02 3.14 16 46 H 0.10 2.78 8.14 -2.38 -0.02 2.76 16 47 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 48 H 0.07 3.02 6.22 -2.39 -0.01 3.01 16 Total: -1.00 -81.69 395.55 -1.87 -83.56 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.37 Total: 37.20 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 4.36 Total: -23.06 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -3.12 Total: -109.88 kcal Atomic # 8 Polarization: -82.88 SS G_CDS: -4.43 Total: -87.31 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 1.90 Total: 43.98 kcal Atomic # 16 Polarization: 55.72 SS G_CDS: -0.20 Total: 55.52 kcal Total: -81.69 -1.87 -83.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752472537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.501 kcal (2) G-P(sol) polarization free energy of solvation -81.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds